Wall clock time and date at job start Mon Mar 30 2020 06:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00131 * 2 1 4 4 H 1.48503 * 109.47318 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47253 * 299.99810 * 3 2 1 6 6 H 1.48502 * 109.47254 * 59.99815 * 3 2 1 7 7 C 1.37882 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00420 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99814 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47272 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.46626 * 304.99970 * 10 9 7 12 12 N 1.46902 * 109.47003 * 65.00031 * 10 9 7 13 13 C 1.46893 * 110.99703 * 205.15475 * 12 10 9 14 14 C 1.53363 * 114.56820 * 202.08447 * 13 12 10 15 15 O 1.43346 * 88.49973 * 220.44708 * 14 13 12 16 16 C 1.43351 * 88.32080 * 28.12687 * 15 14 13 17 17 C 1.50701 * 109.47012 * 185.00244 * 10 9 7 18 18 C 1.38234 * 119.99991 * 286.19825 * 17 10 9 19 19 C 1.38236 * 119.99672 * 179.81094 * 18 17 10 20 20 C 1.38236 * 120.00225 * 0.40079 * 19 18 17 21 21 C 1.38236 * 119.99781 * 359.85478 * 20 19 18 22 22 C 1.38234 * 119.99773 * 106.47501 * 17 10 9 23 23 H 0.96996 * 119.99677 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46788 * 59.99810 * 9 7 2 25 25 H 1.09002 * 109.47351 * 300.00740 * 9 7 2 26 26 H 1.00896 * 110.99781 * 81.20544 * 12 10 9 27 27 H 1.09005 * 113.57090 * 336.36034 * 13 12 10 28 28 H 1.08998 * 113.39337 * 105.52305 * 14 13 12 29 29 H 1.09007 * 113.38927 * 335.36436 * 14 13 12 30 30 H 1.09002 * 113.39467 * 86.75312 * 16 15 14 31 31 H 1.09000 * 113.38973 * 216.90815 * 16 15 14 32 32 H 1.07998 * 119.99799 * 359.97438 * 18 17 10 33 33 H 1.08004 * 119.99483 * 180.22898 * 19 18 17 34 34 H 1.07995 * 119.99749 * 179.82958 * 20 19 18 35 35 H 1.07998 * 119.99911 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.00414 * 359.97438 * 22 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 1 2.9293 -3.5560 -0.8392 12 7 3.0083 -3.6529 1.2580 13 6 4.3109 -4.3100 1.0870 14 6 4.9413 -4.8241 2.3871 15 8 6.2117 -4.3635 1.9090 16 6 5.5171 -3.3635 1.1524 17 6 1.4958 -4.9638 -0.1200 18 6 0.7870 -5.4576 0.9592 19 6 0.0963 -6.6497 0.8453 20 6 0.1213 -7.3520 -0.3451 21 6 0.8344 -6.8608 -1.4226 22 6 1.5219 -5.6668 -1.3100 23 1 -0.4849 0.8400 0.0004 24 1 0.6241 -2.5574 -0.8880 25 1 0.6246 -2.5563 0.8919 26 1 2.4821 -4.0820 2.0042 27 1 4.3360 -5.0194 0.2598 28 1 4.8866 -5.9073 2.4957 29 1 4.5951 -4.2946 3.2748 30 1 5.3209 -2.4521 1.7172 31 1 5.9674 -3.1664 0.1796 32 1 0.7707 -4.9108 1.8903 33 1 -0.4605 -7.0336 1.6873 34 1 -0.4161 -8.2847 -0.4331 35 1 0.8543 -7.4097 -2.3524 36 1 2.0790 -5.2830 -2.1519 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287844563.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:14 Heat of formation + Delta-G solvation = -5.940627 kcal Electronic energy + Delta-G solvation = -17812.949685 eV Core-core repulsion = 15069.293550 eV Total energy + Delta-G solvation = -2743.656136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.67844 -40.27789 -37.10126 -34.72093 -32.42924 -31.74104 -30.52965 -28.46737 -27.15460 -26.02290 -23.81200 -23.24197 -21.35840 -21.15346 -18.63708 -17.74845 -17.50580 -17.22378 -16.69181 -16.46313 -16.00731 -15.76778 -15.02186 -14.68116 -14.34314 -14.19612 -13.89901 -13.68774 -13.48293 -13.43855 -12.86704 -12.67098 -12.35128 -12.22580 -12.12553 -11.79653 -11.67368 -11.40733 -11.09552 -10.72665 -10.48989 -9.78590 -9.55462 -9.23410 -8.09129 -6.14388 0.50325 0.53851 1.42226 1.43784 1.55962 2.47806 2.92503 2.99798 3.22490 3.30662 3.37348 3.90827 4.02845 4.07215 4.20260 4.32235 4.40261 4.45651 4.49565 4.63565 4.68896 4.74886 4.82192 5.02943 5.04538 5.10169 5.16852 5.19893 5.49474 5.60332 5.62076 5.64530 5.72140 5.89807 6.17015 6.25790 6.40164 6.57439 6.99568 7.51473 9.02955 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.015041 B = 0.008276 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.094252 B = 3382.485384 C = 4818.190905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.005 4.005 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.497 4.497 8 H 0.061 0.939 9 C 0.051 3.949 10 C 0.145 3.855 11 H 0.066 0.934 12 N -0.654 5.654 13 C 0.020 3.980 14 C 0.035 3.965 15 O -0.391 6.391 16 C 0.035 3.965 17 C -0.116 4.116 18 C -0.131 4.131 19 C -0.121 4.121 20 C -0.130 4.130 21 C -0.122 4.122 22 C -0.133 4.133 23 H 0.258 0.742 24 H -0.013 1.013 25 H -0.006 1.006 26 H 0.344 0.656 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.293 -14.592 1.480 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.201 4.201 3 Si 0.782 3.218 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.536 4.536 8 H 0.079 0.921 9 C 0.014 3.986 10 C 0.035 3.965 11 H 0.085 0.915 12 N -0.287 5.287 13 C -0.090 4.090 14 C -0.042 4.042 15 O -0.309 6.309 16 C -0.042 4.042 17 C -0.118 4.118 18 C -0.149 4.149 19 C -0.139 4.139 20 C -0.148 4.148 21 C -0.139 4.139 22 C -0.152 4.152 23 H 0.067 0.933 24 H 0.005 0.995 25 H 0.012 0.988 26 H 0.165 0.835 27 H 0.104 0.896 28 H 0.120 0.880 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.729 -13.914 1.448 14.767 hybrid contribution -0.374 0.486 -0.172 0.637 sum 4.355 -13.428 1.276 14.174 Atomic orbital electron populations 1.70108 1.07592 1.27054 1.53402 1.25849 0.95581 1.02800 0.95877 0.85531 0.79275 0.79753 0.77249 1.18707 1.21018 1.21020 1.21494 0.93387 0.91280 1.47416 0.92051 1.18876 0.93079 0.92225 0.94415 1.20532 0.93818 0.90458 0.91669 0.91544 1.60615 1.04035 1.57294 1.06778 1.24333 0.90470 0.95366 0.98879 1.24009 0.81891 1.01641 0.96687 1.89788 1.25714 1.49340 1.66082 1.23931 0.90491 0.93043 0.96756 1.20937 0.99085 0.96744 0.95028 1.21080 0.98178 0.97027 0.98630 1.21409 0.98860 0.94574 0.99019 1.21469 0.99552 1.00902 0.92912 1.21431 0.96942 0.95701 0.99866 1.21264 1.00906 0.95997 0.97011 0.93322 0.99514 0.98789 0.83462 0.89563 0.88038 0.89104 0.90112 0.89632 0.86433 0.83931 0.83394 0.83852 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.39 13.29 21.45 0.28 -57.10 16 2 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 3 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.50 -27.64 8.84 25.60 0.23 -27.42 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.05 2.64 4.56 29.85 0.14 2.77 16 10 C 0.15 5.69 2.03 44.17 0.09 5.78 16 11 H 0.07 2.67 7.64 -2.39 -0.02 2.66 16 12 N -0.65 -22.82 6.06 -478.12 -2.90 -25.71 16 13 C 0.02 0.60 4.35 45.19 0.20 0.80 16 14 C 0.03 0.88 8.39 63.84 0.54 1.42 16 15 O -0.39 -11.92 12.74 -148.98 -1.90 -13.81 16 16 C 0.04 1.09 8.57 63.87 0.55 1.63 16 17 C -0.12 -3.94 4.79 -19.87 -0.10 -4.03 16 18 C -0.13 -4.00 8.97 22.27 0.20 -3.81 16 19 C -0.12 -3.01 10.05 22.27 0.22 -2.79 16 20 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 21 C -0.12 -2.99 10.05 22.27 0.22 -2.76 16 22 C -0.13 -4.03 9.67 22.27 0.22 -3.81 16 23 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 24 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 25 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.34 11.03 6.53 -89.70 -0.59 10.44 16 27 H 0.09 2.51 7.86 -2.38 -0.02 2.49 16 28 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.09 2.18 8.14 -2.38 -0.02 2.17 16 30 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.12 3.57 6.87 -2.91 -0.02 3.55 16 33 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.12 3.47 7.99 -2.91 -0.02 3.44 16 Total: -1.00 -65.65 304.68 1.18 -64.47 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.47 Total: 19.90 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 3.18 Total: -34.77 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -2.61 Total: -82.82 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -1.90 Total: -13.81 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.65 1.18 -64.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287844563.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.533 kcal (2) G-P(sol) polarization free energy of solvation -65.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds