Wall clock time and date at job start Mon Mar 30 2020 06:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00189 * 2 1 4 4 H 1.48495 * 109.47467 * 239.99976 * 3 2 1 5 5 H 1.48502 * 109.47183 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46623 * 119.99905 * 3 2 1 7 7 C 1.37875 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00176 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00365 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47419 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47096 * 54.78320 * 10 9 7 12 12 N 1.46905 * 109.47034 * 294.78004 * 10 9 7 13 13 C 1.46893 * 110.99534 * 157.81098 * 12 10 9 14 14 C 1.54041 * 113.81477 * 250.41152 * 13 12 10 15 15 O 1.44176 * 85.52082 * 223.19851 * 14 13 12 16 16 C 1.44185 * 93.33695 * 24.19180 * 15 14 13 17 17 C 1.50697 * 109.47100 * 174.78077 * 10 9 7 18 18 C 1.38234 * 119.99922 * 252.74507 * 17 10 9 19 19 C 1.38234 * 120.00123 * 180.02562 * 18 17 10 20 20 C 1.38233 * 120.00051 * 359.95192 * 19 18 17 21 21 C 1.38233 * 119.99927 * 0.02562 * 20 19 18 22 22 C 1.38236 * 120.00251 * 0.06763 * 21 20 19 23 23 H 0.96999 * 120.00100 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46661 * 60.00368 * 9 7 2 25 25 H 1.09006 * 109.46976 * 300.00838 * 9 7 2 26 26 H 1.00893 * 110.99615 * 281.76415 * 12 10 9 27 27 H 1.08997 * 113.00618 * 22.40001 * 13 12 10 28 28 H 1.08992 * 113.86519 * 337.34905 * 14 13 12 29 29 H 1.09003 * 113.86325 * 109.05046 * 14 13 12 30 30 H 1.08996 * 113.86578 * 221.65681 * 16 15 14 31 31 H 1.09004 * 113.86120 * 89.95648 * 16 15 14 32 32 H 1.07999 * 120.00399 * 359.97438 * 18 17 10 33 33 H 1.08002 * 120.00239 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.00111 * 179.72466 * 20 19 18 35 35 H 1.08000 * 120.00494 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.00471 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6962 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9317 -3.5532 0.8390 12 7 3.0046 -3.6571 -1.2580 13 6 4.2772 -4.3750 -1.1072 14 6 5.5150 -3.4585 -1.1316 15 8 6.1026 -4.4640 -1.9816 16 6 4.8224 -4.9579 -2.4246 17 6 1.4961 -4.9634 0.1287 18 6 1.5387 -5.6705 1.3158 19 6 0.8521 -6.8643 1.4342 20 6 0.1219 -7.3507 0.3659 21 6 0.0789 -6.6434 -0.8210 22 6 0.7671 -5.4504 -0.9401 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6245 -2.5571 0.8897 26 1 2.4578 -4.0449 -2.0121 27 1 4.2699 -5.0861 -0.2811 28 1 5.3469 -2.5036 -1.6294 29 1 6.0072 -3.3563 -0.1644 30 1 4.7653 -6.0448 -2.4831 31 1 4.4429 -4.4607 -3.3173 32 1 2.1092 -5.2906 2.1504 33 1 0.8857 -7.4170 2.3615 34 1 -0.4110 -8.2857 0.4569 35 1 -0.4912 -7.0234 -1.6558 36 1 0.7338 -4.8980 -1.8675 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287844564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:18 Heat of formation + Delta-G solvation = 10.597808 kcal Electronic energy + Delta-G solvation = -17822.403820 eV Core-core repulsion = 15079.464844 eV Total energy + Delta-G solvation = -2742.938975 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.12737 -39.03501 -35.63754 -32.66864 -31.01759 -30.61697 -28.90047 -26.79236 -26.28953 -24.28068 -22.46203 -21.88577 -20.01161 -19.70260 -17.03726 -16.29834 -16.10367 -15.89891 -15.46524 -14.82774 -14.56149 -14.45561 -13.68278 -13.32730 -13.07010 -12.63441 -12.43883 -12.35981 -12.09878 -11.74522 -11.22905 -11.00274 -10.92489 -10.74623 -10.54511 -10.39242 -10.14718 -9.71612 -9.39043 -9.07171 -8.67341 -8.30945 -8.27595 -7.88000 -5.91609 -3.90517 1.64506 1.65177 3.38906 3.43135 3.46036 3.94601 4.05702 4.53370 4.57064 4.68402 5.11627 5.14518 5.21404 5.27909 5.39101 5.43402 5.46662 5.66709 5.75622 5.78873 5.80290 6.02225 6.10017 6.25519 6.26499 6.32788 6.41787 6.70875 6.72463 6.78172 6.91919 7.27510 7.42650 7.59065 7.87701 7.92191 8.08376 8.51196 9.14036 9.71094 11.20086 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.008224 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.169976 B = 3404.025362 C = 4804.663971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.052 3.948 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.493 4.493 8 H 0.059 0.941 9 C 0.042 3.958 10 C 0.127 3.873 11 H 0.075 0.925 12 N -0.647 5.647 13 C 0.019 3.981 14 C 0.046 3.954 15 O -0.390 6.390 16 C 0.030 3.970 17 C -0.094 4.094 18 C -0.118 4.118 19 C -0.121 4.121 20 C -0.136 4.136 21 C -0.119 4.119 22 C -0.116 4.116 23 H 0.259 0.741 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.337 0.663 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.762 -13.068 -1.232 13.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.531 4.531 8 H 0.078 0.922 9 C 0.005 3.995 10 C 0.017 3.983 11 H 0.094 0.906 12 N -0.278 5.278 13 C -0.092 4.092 14 C -0.032 4.032 15 O -0.308 6.308 16 C -0.047 4.047 17 C -0.096 4.096 18 C -0.136 4.136 19 C -0.140 4.140 20 C -0.154 4.154 21 C -0.138 4.138 22 C -0.135 4.135 23 H 0.068 0.932 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.158 0.842 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.180 -12.383 -1.195 13.124 hybrid contribution -0.231 0.058 0.141 0.277 sum 3.949 -12.324 -1.054 12.985 Atomic orbital electron populations 1.69953 1.05992 1.26452 1.51803 1.24994 0.94775 0.99070 0.95936 0.86684 0.79507 0.83405 0.78493 1.20313 1.21617 1.20497 1.21061 0.93135 0.90087 1.48864 0.92245 1.19091 0.92723 0.90404 0.97327 1.21071 0.95023 0.90962 0.91203 0.90636 1.60878 1.04685 1.55504 1.06779 1.24854 0.92399 0.94625 0.97288 1.24208 0.91013 0.93247 0.94701 1.89611 1.26193 1.50682 1.64353 1.24242 0.83420 0.99668 0.97399 1.21179 0.97536 0.97287 0.93604 1.21105 1.00125 0.94938 0.97480 1.21085 0.97881 0.96552 0.98444 1.21024 1.00455 1.00070 0.93829 1.21074 0.99555 0.95486 0.97636 1.20986 0.97428 0.95929 0.99116 0.93189 0.96250 0.96248 0.84241 0.90459 0.88865 0.89813 0.89918 0.89747 0.86334 0.86639 0.86752 0.86544 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.49 -13.41 8.84 -34.44 -0.30 -13.72 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.04 1.03 4.55 -27.88 -0.13 0.90 16 10 C 0.13 2.44 2.02 -68.86 -0.14 2.30 16 11 H 0.08 1.48 7.68 -51.93 -0.40 1.08 16 12 N -0.65 -11.27 6.03 -107.87 -0.65 -11.92 16 13 C 0.02 0.29 4.10 -66.63 -0.27 0.02 16 14 C 0.05 0.71 9.02 37.61 0.34 1.05 16 15 O -0.39 -6.21 12.45 -35.23 -0.44 -6.65 16 16 C 0.03 0.41 8.79 37.61 0.33 0.74 16 17 C -0.09 -1.60 4.64 -104.62 -0.49 -2.08 16 18 C -0.12 -1.83 9.67 -39.58 -0.38 -2.21 16 19 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 20 C -0.14 -1.77 10.05 -39.59 -0.40 -2.16 16 21 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 22 C -0.12 -1.82 8.98 -39.58 -0.36 -2.18 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.34 5.46 6.58 -39.30 -0.26 5.20 16 27 H 0.08 1.16 7.74 -51.93 -0.40 0.76 16 28 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.12 1.71 7.99 -52.49 -0.42 1.30 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.12 1.83 6.92 -52.49 -0.36 1.47 16 LS Contribution 304.82 15.07 4.59 4.59 Total: -1.00 -30.26 304.82 -8.66 -38.92 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.19 Total: 4.55 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -2.69 Total: -20.05 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.09 Total: -38.05 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.44 Total: -6.65 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.26 -8.66 -38.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287844564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.514 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds