Wall clock time and date at job start Mon Mar 30 2020 06:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00189 * 2 1 4 4 H 1.48495 * 109.47467 * 239.99976 * 3 2 1 5 5 H 1.48502 * 109.47183 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46623 * 119.99905 * 3 2 1 7 7 C 1.37875 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00176 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00365 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47419 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47096 * 54.78320 * 10 9 7 12 12 N 1.46905 * 109.47034 * 294.78004 * 10 9 7 13 13 C 1.46893 * 110.99534 * 157.81098 * 12 10 9 14 14 C 1.54041 * 113.81477 * 250.41152 * 13 12 10 15 15 O 1.44176 * 85.52082 * 223.19851 * 14 13 12 16 16 C 1.44185 * 93.33695 * 24.19180 * 15 14 13 17 17 C 1.50697 * 109.47100 * 174.78077 * 10 9 7 18 18 C 1.38234 * 119.99922 * 252.74507 * 17 10 9 19 19 C 1.38234 * 120.00123 * 180.02562 * 18 17 10 20 20 C 1.38233 * 120.00051 * 359.95192 * 19 18 17 21 21 C 1.38233 * 119.99927 * 0.02562 * 20 19 18 22 22 C 1.38236 * 120.00251 * 0.06763 * 21 20 19 23 23 H 0.96999 * 120.00100 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46661 * 60.00368 * 9 7 2 25 25 H 1.09006 * 109.46976 * 300.00838 * 9 7 2 26 26 H 1.00893 * 110.99615 * 281.76415 * 12 10 9 27 27 H 1.08997 * 113.00618 * 22.40001 * 13 12 10 28 28 H 1.08992 * 113.86519 * 337.34905 * 14 13 12 29 29 H 1.09003 * 113.86325 * 109.05046 * 14 13 12 30 30 H 1.08996 * 113.86578 * 221.65681 * 16 15 14 31 31 H 1.09004 * 113.86120 * 89.95648 * 16 15 14 32 32 H 1.07999 * 120.00399 * 359.97438 * 18 17 10 33 33 H 1.08002 * 120.00239 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.00111 * 179.72466 * 20 19 18 35 35 H 1.08000 * 120.00494 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.00471 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6962 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9317 -3.5532 0.8390 12 7 3.0046 -3.6571 -1.2580 13 6 4.2772 -4.3750 -1.1072 14 6 5.5150 -3.4585 -1.1316 15 8 6.1026 -4.4640 -1.9816 16 6 4.8224 -4.9579 -2.4246 17 6 1.4961 -4.9634 0.1287 18 6 1.5387 -5.6705 1.3158 19 6 0.8521 -6.8643 1.4342 20 6 0.1219 -7.3507 0.3659 21 6 0.0789 -6.6434 -0.8210 22 6 0.7671 -5.4504 -0.9401 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6245 -2.5571 0.8897 26 1 2.4578 -4.0449 -2.0121 27 1 4.2699 -5.0861 -0.2811 28 1 5.3469 -2.5036 -1.6294 29 1 6.0072 -3.3563 -0.1644 30 1 4.7653 -6.0448 -2.4831 31 1 4.4429 -4.4607 -3.3173 32 1 2.1092 -5.2906 2.1504 33 1 0.8857 -7.4170 2.3615 34 1 -0.4110 -8.2857 0.4569 35 1 -0.4912 -7.0234 -1.6558 36 1 0.7338 -4.8980 -1.8675 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287844564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:17 Heat of formation + Delta-G solvation = -8.924625 kcal Electronic energy + Delta-G solvation = -17823.250376 eV Core-core repulsion = 15079.464844 eV Total energy + Delta-G solvation = -2743.785531 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.35150 -40.21418 -37.06690 -34.70975 -32.33942 -31.74016 -30.52918 -28.26873 -27.45421 -25.99010 -23.82490 -23.23676 -21.23943 -21.14400 -18.62887 -17.72728 -17.51472 -17.19633 -16.69298 -16.45877 -16.01427 -15.76025 -15.00936 -14.63910 -14.31445 -14.19398 -13.89575 -13.64642 -13.55579 -13.37364 -12.80393 -12.66972 -12.37223 -12.21316 -12.12533 -11.84980 -11.67224 -11.39654 -11.13308 -10.62648 -10.47982 -9.79185 -9.56356 -9.23530 -8.09187 -6.14808 0.49814 0.53275 1.43320 1.45668 1.52893 2.47749 2.77562 2.92088 3.21825 3.34985 3.41512 3.91255 4.02224 4.11298 4.19767 4.31598 4.34669 4.47550 4.51279 4.61509 4.68579 4.75111 4.86789 5.05361 5.09817 5.15963 5.18638 5.19784 5.48461 5.59747 5.61434 5.63977 5.72293 5.89128 6.16509 6.25730 6.40237 6.56750 6.98651 7.51061 9.02516 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.008224 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.169976 B = 3404.025362 C = 4804.663971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.004 4.004 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.052 3.948 10 C 0.144 3.856 11 H 0.066 0.934 12 N -0.659 5.659 13 C 0.022 3.978 14 C 0.043 3.957 15 O -0.403 6.403 16 C 0.039 3.961 17 C -0.116 4.116 18 C -0.133 4.133 19 C -0.121 4.121 20 C -0.130 4.130 21 C -0.121 4.121 22 C -0.131 4.131 23 H 0.258 0.742 24 H -0.007 1.007 25 H -0.014 1.014 26 H 0.342 0.658 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.335 -14.683 -1.327 15.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.200 4.200 3 Si 0.782 3.218 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.195 1.195 7 C -0.539 4.539 8 H 0.079 0.921 9 C 0.015 3.985 10 C 0.035 3.965 11 H 0.084 0.916 12 N -0.291 5.291 13 C -0.089 4.089 14 C -0.035 4.035 15 O -0.322 6.322 16 C -0.038 4.038 17 C -0.118 4.118 18 C -0.152 4.152 19 C -0.139 4.139 20 C -0.148 4.148 21 C -0.139 4.139 22 C -0.149 4.149 23 H 0.067 0.933 24 H 0.012 0.988 25 H 0.004 0.996 26 H 0.164 0.836 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.109 0.891 32 H 0.139 0.861 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.772 -14.012 -1.294 14.859 hybrid contribution -0.449 0.479 0.171 0.679 sum 4.322 -13.533 -1.124 14.251 Atomic orbital electron populations 1.70093 1.07611 1.27220 1.53213 1.25851 0.95582 1.02818 0.95797 0.85635 0.78247 0.78997 0.78911 1.19564 1.21488 1.19495 1.21439 0.93384 0.91308 1.47761 0.92056 1.18865 0.93068 0.92237 0.94372 1.20541 0.93816 0.90416 0.91771 0.91555 1.60732 1.05477 1.56748 1.06173 1.24851 0.90798 0.94598 0.98663 1.24210 0.91387 0.92833 0.95039 1.89597 1.27324 1.50715 1.64548 1.24364 0.81819 1.01124 0.96525 1.20954 0.98986 0.96826 0.95066 1.21265 1.00945 0.95990 0.96981 1.21432 0.96875 0.95721 0.99894 1.21469 0.99478 1.00894 0.92975 1.21406 0.98924 0.94546 0.98992 1.21077 0.98076 0.97046 0.98707 0.93291 0.98837 0.99570 0.83647 0.90149 0.90103 0.88802 0.87500 0.89079 0.86141 0.83831 0.83373 0.83951 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.52 13.29 21.45 0.28 -57.23 16 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 3 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.50 -27.91 8.84 25.60 0.23 -27.69 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.05 2.67 4.55 29.85 0.14 2.81 16 10 C 0.14 5.70 2.02 44.17 0.09 5.79 16 11 H 0.07 2.68 7.68 -2.39 -0.02 2.67 16 12 N -0.66 -23.16 6.03 -506.20 -3.05 -26.22 16 13 C 0.02 0.64 4.10 45.62 0.19 0.83 16 14 C 0.04 1.30 9.02 72.28 0.65 1.95 16 15 O -0.40 -12.28 12.45 -148.98 -1.86 -14.13 16 16 C 0.04 0.98 8.79 72.27 0.64 1.61 16 17 C -0.12 -3.97 4.64 -19.87 -0.09 -4.06 16 18 C -0.13 -4.04 9.67 22.27 0.22 -3.82 16 19 C -0.12 -2.99 10.05 22.27 0.22 -2.76 16 20 C -0.13 -2.96 10.05 22.27 0.22 -2.73 16 21 C -0.12 -3.03 10.05 22.27 0.22 -2.81 16 22 C -0.13 -4.03 8.98 22.27 0.20 -3.83 16 23 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 24 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 25 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 26 H 0.34 11.20 6.58 -89.70 -0.59 10.61 16 27 H 0.08 2.35 7.74 -2.39 -0.02 2.33 16 28 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.12 3.47 7.99 -2.91 -0.02 3.45 16 33 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 34 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 36 H 0.12 3.57 6.92 -2.91 -0.02 3.55 16 Total: -1.00 -65.91 304.82 1.26 -64.65 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.47 Total: 20.39 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: 3.38 Total: -34.51 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -2.77 Total: -83.45 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -1.86 Total: -14.13 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -65.91 1.26 -64.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287844564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.727 kcal (2) G-P(sol) polarization free energy of solvation -65.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds