Wall clock time and date at job start Mon Mar 30 2020 06:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38295 * 119.94062 * 269.72156 * 10 9 7 12 12 C 1.38123 * 120.04952 * 179.72855 * 11 10 9 13 13 C 1.38752 * 119.94638 * 0.52571 * 12 11 10 14 14 O 1.35905 * 120.05265 * 179.72704 * 13 12 11 15 15 C 1.38715 * 119.88704 * 359.75025 * 13 12 11 16 16 C 1.50700 * 120.02305 * 180.02562 * 15 13 12 17 17 H 1.08993 * 109.47134 * 324.97844 * 16 15 13 18 18 N 1.46897 * 109.47028 * 204.97713 * 16 15 13 19 19 C 1.53004 * 109.46944 * 84.97832 * 16 15 13 20 20 C 1.52994 * 117.49801 * 248.74275 * 19 16 15 21 21 C 1.52999 * 117.49632 * 180.08398 * 19 16 15 22 22 C 1.38156 * 119.94398 * 359.97438 * 15 13 12 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.08001 * 119.97022 * 359.97438 * 11 10 9 27 27 H 1.08002 * 120.02497 * 180.25377 * 12 11 10 28 28 H 0.96696 * 113.99601 * 270.01927 * 14 13 12 29 29 H 1.00893 * 111.00487 * 176.04849 * 18 16 15 30 30 H 1.00904 * 111.00032 * 300.00330 * 18 16 15 31 31 H 1.09001 * 115.55053 * 34.41288 * 19 16 15 32 32 H 1.09000 * 117.50426 * 0.02562 * 20 19 16 33 33 H 1.09000 * 117.49905 * 145.02572 * 20 19 16 34 34 H 1.09006 * 117.49534 * 214.97758 * 21 19 16 35 35 H 1.08996 * 117.50143 * 359.97438 * 21 19 16 36 36 H 1.08000 * 119.97126 * 179.97438 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6744 -4.1677 -1.2110 12 6 3.5763 -5.2139 -1.2183 13 6 4.0281 -5.7471 -0.0197 14 8 4.9112 -6.7801 -0.0243 15 6 3.5766 -5.2244 1.1833 16 6 4.0658 -5.8008 2.4869 17 1 4.2100 -6.8756 2.3775 18 7 3.0730 -5.5445 3.5388 19 6 5.3941 -5.1442 2.8683 20 6 6.6517 -6.0142 2.8201 21 6 6.0591 -5.5990 4.1690 22 6 2.6789 -4.1742 1.1852 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 2.3189 -3.7552 -2.1437 27 1 3.9261 -5.6194 -2.1562 28 1 4.4953 -7.6531 -0.0282 29 1 3.3474 -5.9768 4.4081 30 1 2.9215 -4.5542 3.6595 31 1 5.4968 -4.0952 2.5905 32 1 6.5329 -7.0542 2.5163 33 1 7.5819 -5.5374 2.5111 34 1 6.5997 -4.8492 4.7467 35 1 5.5501 -6.3656 4.7532 36 1 2.3267 -3.7671 2.1215 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309227397.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:39 Heat of formation + Delta-G solvation = -6.497298 kcal Electronic energy + Delta-G solvation = -17625.206396 eV Core-core repulsion = 14881.526122 eV Total energy + Delta-G solvation = -2743.680275 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.72932 -37.62915 -36.45687 -33.78478 -33.00707 -30.55964 -29.87984 -26.76771 -25.29601 -23.16495 -22.33107 -21.79071 -20.66580 -19.57671 -18.06556 -16.37818 -16.16192 -15.40170 -15.30402 -15.02408 -14.59975 -14.34525 -13.96697 -13.24765 -12.96335 -12.51362 -12.23830 -12.01419 -11.79439 -11.58686 -11.31546 -11.19154 -11.10823 -10.55799 -10.53247 -10.37586 -10.28699 -9.81020 -9.53771 -9.41477 -8.66403 -8.43953 -8.19264 -7.62030 -6.05572 -4.09427 1.90389 1.98385 3.27959 3.35789 3.40809 3.77896 4.23305 4.45530 4.59785 4.61428 4.84690 4.88212 5.09254 5.20654 5.28837 5.46851 5.51837 5.57920 5.72879 5.87441 5.93260 6.06553 6.11431 6.20307 6.28916 6.49615 6.58120 6.99142 7.03207 7.15272 7.30438 7.42495 7.53616 7.58179 7.83903 7.90514 8.04984 8.30746 8.96165 9.54506 11.04195 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.006057 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.042135 B = 4621.696167 C = 5124.420934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.039 4.039 11 C -0.112 4.112 12 C -0.145 4.145 13 C 0.075 3.925 14 O -0.497 6.497 15 C -0.100 4.100 16 C 0.174 3.826 17 H 0.082 0.918 18 N -0.838 5.838 19 C -0.177 4.177 20 C -0.162 4.162 21 C -0.187 4.187 22 C -0.094 4.094 23 H 0.261 0.739 24 H 0.030 0.970 25 H 0.029 0.971 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.374 0.626 29 H 0.337 0.663 30 H 0.346 0.654 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.772 -12.823 4.768 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.039 4.039 11 C -0.131 4.131 12 C -0.164 4.164 13 C 0.030 3.970 14 O -0.305 6.305 15 C -0.101 4.101 16 C 0.062 3.938 17 H 0.100 0.900 18 N -0.367 5.367 19 C -0.197 4.197 20 C -0.199 4.199 21 C -0.224 4.224 22 C -0.112 4.112 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.139 0.861 27 H 0.135 0.865 28 H 0.228 0.772 29 H 0.149 0.851 30 H 0.160 0.840 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.513 -12.648 4.312 15.844 hybrid contribution 0.970 1.160 0.385 1.560 sum 9.483 -11.488 4.697 15.619 Atomic orbital electron populations 1.69969 1.06009 1.26702 1.50552 1.25005 0.94868 0.99215 0.95200 0.86505 0.80147 0.83567 0.77662 1.19710 1.20904 1.20926 1.21094 0.93042 0.89861 1.50905 0.92489 1.18355 0.92548 0.89516 0.98467 1.20714 0.96368 0.95082 0.91754 1.20992 0.97468 0.96022 0.98574 1.21242 0.98871 0.99323 0.96930 1.18023 0.94533 0.92647 0.91769 1.84859 1.33367 1.15749 1.96561 1.19816 0.98558 0.98688 0.93049 1.19605 0.86730 0.98272 0.89144 0.89983 1.59081 1.47769 1.19279 1.10548 1.23203 0.94972 1.00546 1.01021 1.22841 0.97108 1.00415 0.99572 1.22948 1.04799 1.03782 0.90887 1.20731 0.96826 0.95225 0.98463 0.92884 0.95206 0.95289 0.86091 0.86518 0.77223 0.85076 0.83972 0.87830 0.88684 0.89222 0.89029 0.89095 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.51 -14.24 9.09 -34.44 -0.31 -14.55 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.05 1.23 5.10 -29.03 -0.15 1.08 16 10 C -0.04 -0.85 5.07 -104.60 -0.53 -1.38 16 11 C -0.11 -2.20 9.69 -39.60 -0.38 -2.59 16 12 C -0.15 -2.50 9.99 -39.43 -0.39 -2.89 16 13 C 0.07 1.23 6.68 -39.22 -0.26 0.97 16 14 O -0.50 -6.83 12.64 -19.44 -0.25 -7.08 16 15 C -0.10 -1.70 5.05 -104.48 -0.53 -2.22 16 16 C 0.17 2.39 2.92 -68.86 -0.20 2.19 16 17 H 0.08 1.07 7.45 -51.93 -0.39 0.69 16 18 N -0.84 -10.80 8.81 -5.66 -0.05 -10.85 16 19 C -0.18 -2.33 5.31 -90.62 -0.48 -2.81 16 20 C -0.16 -1.86 10.18 -26.70 -0.27 -2.13 16 21 C -0.19 -1.96 9.87 -26.70 -0.26 -2.23 16 22 C -0.09 -1.83 8.92 -39.61 -0.35 -2.19 16 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 25 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 26 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 27 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.37 3.46 9.06 45.56 0.41 3.88 16 29 H 0.34 3.53 8.30 -39.30 -0.33 3.20 16 30 H 0.35 4.64 7.21 -39.29 -0.28 4.35 16 31 H 0.10 1.58 8.11 -51.93 -0.42 1.16 16 32 H 0.09 1.04 8.05 -51.93 -0.42 0.62 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.84 7.74 -51.93 -0.40 0.44 16 36 H 0.12 2.34 6.29 -52.49 -0.33 2.01 16 LS Contribution 305.75 15.07 4.61 4.61 Total: -1.00 -30.46 305.75 -8.43 -38.89 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -4.23 Total: 10.68 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -4.23 Total: -27.20 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.69 Total: -36.39 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.25 Total: -7.08 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.46 -8.43 -38.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309227397.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.393 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds