Wall clock time and date at job start Mon Mar 30 2020 06:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38295 * 119.94062 * 269.72156 * 10 9 7 12 12 C 1.38123 * 120.04952 * 179.72855 * 11 10 9 13 13 C 1.38752 * 119.94638 * 0.52571 * 12 11 10 14 14 O 1.35905 * 120.05265 * 179.72704 * 13 12 11 15 15 C 1.38715 * 119.88704 * 359.75025 * 13 12 11 16 16 C 1.50700 * 120.02305 * 180.02562 * 15 13 12 17 17 H 1.08993 * 109.47134 * 324.97844 * 16 15 13 18 18 N 1.46897 * 109.47028 * 204.97713 * 16 15 13 19 19 C 1.53004 * 109.46944 * 84.97832 * 16 15 13 20 20 C 1.52994 * 117.49801 * 248.74275 * 19 16 15 21 21 C 1.52999 * 117.49632 * 180.08398 * 19 16 15 22 22 C 1.38156 * 119.94398 * 359.97438 * 15 13 12 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.08001 * 119.97022 * 359.97438 * 11 10 9 27 27 H 1.08002 * 120.02497 * 180.25377 * 12 11 10 28 28 H 0.96696 * 113.99601 * 270.01927 * 14 13 12 29 29 H 1.00893 * 111.00487 * 176.04849 * 18 16 15 30 30 H 1.00904 * 111.00032 * 300.00330 * 18 16 15 31 31 H 1.09001 * 115.55053 * 34.41288 * 19 16 15 32 32 H 1.09000 * 117.50426 * 0.02562 * 20 19 16 33 33 H 1.09000 * 117.49905 * 145.02572 * 20 19 16 34 34 H 1.09006 * 117.49534 * 214.97758 * 21 19 16 35 35 H 1.08996 * 117.50143 * 359.97438 * 21 19 16 36 36 H 1.08000 * 119.97126 * 179.97438 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6744 -4.1677 -1.2110 12 6 3.5763 -5.2139 -1.2183 13 6 4.0281 -5.7471 -0.0197 14 8 4.9112 -6.7801 -0.0243 15 6 3.5766 -5.2244 1.1833 16 6 4.0658 -5.8008 2.4869 17 1 4.2100 -6.8756 2.3775 18 7 3.0730 -5.5445 3.5388 19 6 5.3941 -5.1442 2.8683 20 6 6.6517 -6.0142 2.8201 21 6 6.0591 -5.5990 4.1690 22 6 2.6789 -4.1742 1.1852 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 2.3189 -3.7552 -2.1437 27 1 3.9261 -5.6194 -2.1562 28 1 4.4953 -7.6531 -0.0282 29 1 3.3474 -5.9768 4.4081 30 1 2.9215 -4.5542 3.6595 31 1 5.4968 -4.0952 2.5905 32 1 6.5329 -7.0542 2.5163 33 1 7.5819 -5.5374 2.5111 34 1 6.5997 -4.8492 4.7467 35 1 5.5501 -6.3656 4.7532 36 1 2.3267 -3.7671 2.1215 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309227397.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:39 Heat of formation + Delta-G solvation = -27.054866 kcal Electronic energy + Delta-G solvation = -17626.097839 eV Core-core repulsion = 14881.526122 eV Total energy + Delta-G solvation = -2744.571718 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.03427 -38.68212 -37.79859 -35.29791 -34.62257 -32.30954 -31.19158 -28.56918 -26.52553 -25.07738 -23.21000 -23.05470 -22.06242 -20.80798 -19.29318 -18.52424 -17.41473 -16.85146 -16.44599 -16.31448 -16.18555 -15.51997 -15.23931 -14.51572 -14.50429 -14.38971 -13.62563 -13.47751 -13.25980 -12.89057 -12.86510 -12.72157 -12.40505 -12.37206 -12.27592 -11.58508 -11.40605 -11.38364 -11.21178 -10.99259 -10.61998 -9.75530 -9.54739 -9.13687 -8.21040 -6.34563 0.47474 0.53641 1.37426 1.38089 1.51365 2.37671 2.80419 2.92683 3.09212 3.41413 3.54744 3.81200 3.93440 4.09295 4.12217 4.15717 4.33796 4.39928 4.65324 4.66750 4.77169 4.87426 5.00754 5.06815 5.10891 5.20988 5.25825 5.34142 5.39841 5.52576 5.62570 5.73829 6.01086 6.05738 6.19407 6.21379 6.60800 6.78075 6.97492 7.33952 8.88076 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.006057 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.042135 B = 4621.696167 C = 5124.420934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.051 0.949 9 C 0.059 3.941 10 C -0.073 4.073 11 C -0.124 4.124 12 C -0.143 4.143 13 C 0.092 3.908 14 O -0.493 6.493 15 C -0.100 4.100 16 C 0.182 3.818 17 H 0.099 0.901 18 N -0.843 5.843 19 C -0.198 4.198 20 C -0.158 4.158 21 C -0.166 4.166 22 C -0.103 4.103 23 H 0.266 0.734 24 H 0.004 0.996 25 H 0.003 0.997 26 H 0.118 0.882 27 H 0.145 0.855 28 H 0.401 0.599 29 H 0.352 0.648 30 H 0.341 0.659 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.971 -14.289 5.379 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.565 4.565 8 H 0.069 0.931 9 C 0.022 3.978 10 C -0.073 4.073 11 C -0.142 4.142 12 C -0.161 4.161 13 C 0.047 3.953 14 O -0.304 6.304 15 C -0.101 4.101 16 C 0.070 3.930 17 H 0.117 0.883 18 N -0.373 5.373 19 C -0.219 4.219 20 C -0.196 4.196 21 C -0.203 4.203 22 C -0.121 4.121 23 H 0.075 0.925 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.136 0.864 27 H 0.163 0.837 28 H 0.259 0.741 29 H 0.167 0.833 30 H 0.154 0.846 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.715 -14.152 4.933 18.424 hybrid contribution 0.334 1.483 0.209 1.534 sum 11.049 -12.670 5.142 17.580 Atomic orbital electron populations 1.70085 1.07594 1.27882 1.51312 1.25894 0.95744 1.02968 0.94599 0.85424 0.78811 0.78908 0.78079 1.19210 1.20042 1.20015 1.21376 0.92902 0.91289 1.50898 0.93080 1.18072 0.92832 0.91044 0.95865 1.20420 0.97644 0.95473 0.93779 1.20997 0.98523 0.97098 0.97601 1.21473 0.97803 0.98178 0.98629 1.18050 0.93228 0.92870 0.91191 1.84793 1.32744 1.16535 1.96354 1.20125 0.97293 0.97494 0.95180 1.19566 0.86940 0.98743 0.87719 0.88329 1.59050 1.47811 1.19088 1.11365 1.23016 0.95479 0.99323 1.04062 1.22928 0.96026 1.00507 1.00149 1.23034 1.03321 1.03728 0.90206 1.20687 0.97839 0.96234 0.97345 0.92524 0.97807 0.97820 0.86422 0.83680 0.74142 0.83337 0.84555 0.90678 0.87539 0.89301 0.88459 0.87215 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.53 -30.55 9.09 25.60 0.23 -30.32 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.06 3.21 5.10 29.10 0.15 3.36 16 10 C -0.07 -3.31 5.07 -19.85 -0.10 -3.41 16 11 C -0.12 -4.95 9.69 22.26 0.22 -4.73 16 12 C -0.14 -4.67 9.99 22.37 0.22 -4.45 16 13 C 0.09 2.81 6.68 22.51 0.15 2.96 16 14 O -0.49 -11.57 12.64 -92.48 -1.17 -12.74 16 15 C -0.10 -3.28 5.05 -19.77 -0.10 -3.38 16 16 C 0.18 4.63 2.92 44.17 0.13 4.76 16 17 H 0.10 2.21 7.45 -2.39 -0.02 2.19 16 18 N -0.84 -20.55 8.81 -171.81 -1.51 -22.06 16 19 C -0.20 -4.84 5.31 -10.79 -0.06 -4.90 16 20 C -0.16 -3.17 10.18 30.62 0.31 -2.86 16 21 C -0.17 -2.98 9.87 30.62 0.30 -2.68 16 22 C -0.10 -4.10 8.92 22.25 0.20 -3.90 16 23 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 24 H 0.00 0.21 8.08 -2.38 -0.02 0.19 16 25 H 0.00 0.20 8.08 -2.39 -0.02 0.18 16 26 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 27 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 28 H 0.40 5.50 9.06 -74.06 -0.67 4.83 16 29 H 0.35 6.55 8.30 -89.70 -0.74 5.81 16 30 H 0.34 9.07 7.21 -89.69 -0.65 8.43 16 31 H 0.07 2.27 8.11 -2.39 -0.02 2.25 16 32 H 0.11 1.89 8.05 -2.39 -0.02 1.88 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.11 1.58 7.74 -2.39 -0.02 1.56 16 36 H 0.12 4.65 6.29 -2.91 -0.02 4.63 16 Total: -1.00 -67.25 305.75 0.79 -66.45 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.95 Total: 26.34 kcal Atomic # 6 Polarization: -50.86 SS G_CDS: 2.12 Total: -48.74 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -1.23 Total: -78.10 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -1.17 Total: -12.74 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -67.25 0.79 -66.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309227397.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.398 kcal (2) G-P(sol) polarization free energy of solvation -67.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds