Wall clock time and date at job start Mon Mar 30 2020 06:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99842 * 2 1 4 4 H 1.48507 * 109.47121 * 270.00423 * 3 2 1 5 5 H 1.48506 * 109.46792 * 29.99796 * 3 2 1 6 6 H 1.48493 * 109.47232 * 150.00093 * 3 2 1 7 7 C 1.37875 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99959 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00060 * 179.97438 * 7 2 1 10 10 C 1.50702 * 109.47270 * 180.02562 * 9 7 2 11 11 C 1.38289 * 119.94227 * 270.02595 * 10 9 7 12 12 C 1.38130 * 120.05421 * 179.97438 * 11 10 9 13 13 C 1.38759 * 119.94188 * 359.81231 * 12 11 10 14 14 O 1.35897 * 120.05188 * 180.23153 * 13 12 11 15 15 C 1.38708 * 119.88750 * 0.43884 * 13 12 11 16 16 C 1.50703 * 120.02535 * 179.79224 * 15 13 12 17 17 H 1.08992 * 109.46894 * 39.72240 * 16 15 13 18 18 N 1.46906 * 109.47109 * 159.72504 * 16 15 13 19 19 C 1.52997 * 109.47084 * 279.72210 * 16 15 13 20 20 C 1.53000 * 117.50171 * 248.74834 * 19 16 15 21 21 C 1.52995 * 117.50170 * 180.08790 * 19 16 15 22 22 C 1.38166 * 119.94462 * 359.51575 * 15 13 12 23 23 H 0.96997 * 120.00197 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46974 * 60.00564 * 9 7 2 25 25 H 1.08998 * 109.47426 * 300.00162 * 9 7 2 26 26 H 1.07998 * 119.97703 * 359.97438 * 11 10 9 27 27 H 1.08000 * 120.02510 * 180.02562 * 12 11 10 28 28 H 0.96707 * 113.99676 * 270.20310 * 14 13 12 29 29 H 1.00902 * 110.99567 * 59.99488 * 18 16 15 30 30 H 1.00901 * 111.00013 * 183.95340 * 18 16 15 31 31 H 1.09002 * 115.55400 * 34.41705 * 19 16 15 32 32 H 1.09007 * 117.49797 * 359.97438 * 20 19 16 33 33 H 1.09005 * 117.50002 * 145.02041 * 20 19 16 34 34 H 1.09002 * 117.50298 * 214.98111 * 21 19 16 35 35 H 1.09008 * 117.49705 * 0.02562 * 21 19 16 36 36 H 1.08007 * 119.97178 * 180.25132 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0141 -2.6147 0.0001 11 6 4.2442 -3.2653 1.1984 12 6 4.7042 -4.5677 1.2013 13 6 4.9317 -5.2245 0.0003 14 8 5.3799 -6.5074 0.0005 15 6 4.7051 -4.5678 -1.2003 16 6 4.9557 -5.2766 -2.5065 17 1 4.6212 -6.3110 -2.4285 18 7 4.2140 -4.6016 -3.5800 19 6 6.4521 -5.2470 -2.8239 20 6 6.9063 -4.3911 -4.0080 21 6 6.9129 -5.9177 -4.1195 22 6 4.2441 -3.2654 -1.1977 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6795 0.8895 25 1 3.8746 -0.6806 -0.8905 26 1 4.0640 -2.7548 2.1329 27 1 4.8834 -5.0756 2.1374 28 1 6.3436 -6.5874 0.0023 29 1 4.5062 -3.6402 -3.6722 30 1 4.3138 -5.0954 -4.4542 31 1 7.1168 -5.3071 -1.9621 32 1 6.1390 -3.8494 -4.5611 33 1 7.8701 -3.8885 -3.9253 34 1 7.8808 -6.4188 -4.1102 35 1 6.1498 -6.3798 -4.7460 36 1 4.0636 -2.7550 -2.1323 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309227399.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:42 Heat of formation + Delta-G solvation = 3.805964 kcal Electronic energy + Delta-G solvation = -17661.879887 eV Core-core repulsion = 14918.646395 eV Total energy + Delta-G solvation = -2743.233492 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.90194 -37.98678 -36.54899 -33.56386 -32.87705 -30.88441 -29.93270 -27.27962 -25.71248 -22.88633 -22.58294 -21.79041 -20.57161 -19.39702 -18.00653 -16.75624 -16.12351 -16.00351 -15.72590 -14.84954 -14.56276 -14.41219 -13.95199 -13.44463 -12.96256 -12.52797 -12.33486 -12.26957 -11.94108 -11.80695 -11.68520 -11.33986 -11.20851 -10.64854 -10.49846 -10.25578 -10.01435 -9.95790 -9.79490 -9.35250 -8.71984 -8.57147 -8.25571 -7.67549 -6.05437 -4.04593 1.82311 1.91950 3.28487 3.36400 3.38562 3.60695 4.17483 4.42055 4.48987 4.58980 4.64766 4.71823 4.85240 5.16303 5.25828 5.33279 5.41016 5.44988 5.67309 5.73059 5.85012 5.89208 5.94494 6.06478 6.17722 6.39931 6.48603 6.89800 6.92161 6.96829 6.98710 7.25165 7.38545 7.48252 7.58595 7.70264 7.98427 8.51630 9.01160 9.54348 11.07624 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.024962 B = 0.006089 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.448312 B = 4597.643841 C = 5177.384154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.512 4.512 8 H 0.074 0.926 9 C 0.016 3.984 10 C -0.035 4.035 11 C -0.110 4.110 12 C -0.144 4.144 13 C 0.075 3.925 14 O -0.497 6.497 15 C -0.099 4.099 16 C 0.170 3.830 17 H 0.096 0.904 18 N -0.836 5.836 19 C -0.175 4.175 20 C -0.186 4.186 21 C -0.181 4.181 22 C -0.089 4.089 23 H 0.264 0.736 24 H 0.027 0.973 25 H 0.023 0.977 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.375 0.625 29 H 0.344 0.656 30 H 0.338 0.662 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.632 -9.597 -5.142 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.550 4.550 8 H 0.093 0.907 9 C -0.021 4.021 10 C -0.035 4.035 11 C -0.128 4.128 12 C -0.162 4.162 13 C 0.030 3.970 14 O -0.306 6.306 15 C -0.100 4.100 16 C 0.058 3.942 17 H 0.113 0.887 18 N -0.368 5.368 19 C -0.195 4.195 20 C -0.223 4.223 21 C -0.218 4.218 22 C -0.108 4.108 23 H 0.074 0.926 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.140 0.860 27 H 0.137 0.863 28 H 0.228 0.772 29 H 0.161 0.839 30 H 0.151 0.849 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.191 -9.754 -4.717 17.854 hybrid contribution 1.737 1.098 -0.384 2.090 sum 15.928 -8.656 -5.101 18.832 Atomic orbital electron populations 1.69901 1.06251 1.26916 1.50687 1.24992 0.94714 0.98931 0.94552 0.86821 0.80378 0.83786 0.78599 1.20184 1.21262 1.18988 1.20935 0.88187 0.94730 1.51137 0.90737 1.18799 0.97539 0.88519 0.97281 1.20318 0.92951 0.98180 0.92051 1.20958 0.99423 0.93928 0.98470 1.21245 1.02964 0.95042 0.96989 1.18066 1.03207 0.83874 0.91824 1.84842 1.25940 1.23214 1.96579 1.19821 1.02600 0.94522 0.93026 1.19641 0.87501 0.98099 0.88968 0.88652 1.58924 1.62115 1.06794 1.08938 1.23244 0.98851 1.04820 0.92586 1.23076 1.03145 0.93641 1.02464 1.22972 1.02822 0.95161 1.00799 1.20718 0.98565 0.93186 0.98309 0.92618 0.95437 0.95907 0.85968 0.86321 0.77161 0.83931 0.84881 0.88023 0.88628 0.88781 0.88896 0.88835 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.31 27.47 -169.99 -4.67 16.65 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.51 -14.63 9.65 -34.44 -0.33 -14.96 16 8 H 0.07 2.36 7.98 -52.48 -0.42 1.94 16 9 C 0.02 0.37 4.17 -29.04 -0.12 0.25 16 10 C -0.03 -0.73 5.07 -104.60 -0.53 -1.26 16 11 C -0.11 -2.09 9.69 -39.60 -0.38 -2.48 16 12 C -0.14 -2.42 9.99 -39.43 -0.39 -2.81 16 13 C 0.07 1.21 6.68 -39.22 -0.26 0.95 16 14 O -0.50 -6.80 12.73 -19.42 -0.25 -7.05 16 15 C -0.10 -1.64 5.08 -104.47 -0.53 -2.17 16 16 C 0.17 2.29 3.03 -68.86 -0.21 2.08 16 17 H 0.10 1.36 7.84 -51.93 -0.41 0.95 16 18 N -0.84 -10.99 8.00 -5.65 -0.05 -11.03 16 19 C -0.17 -1.88 5.69 -90.62 -0.52 -2.40 16 20 C -0.19 -1.79 9.62 -26.70 -0.26 -2.05 16 21 C -0.18 -1.60 9.94 -26.70 -0.27 -1.86 16 22 C -0.09 -1.70 8.90 -39.61 -0.35 -2.06 16 23 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.03 0.64 7.14 -51.93 -0.37 0.27 16 25 H 0.02 0.53 7.51 -51.93 -0.39 0.14 16 26 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 27 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.37 3.33 9.06 45.56 0.41 3.74 16 29 H 0.34 4.43 5.80 -39.29 -0.23 4.20 16 30 H 0.34 3.60 8.01 -39.29 -0.31 3.28 16 31 H 0.10 1.08 8.11 -51.93 -0.42 0.65 16 32 H 0.10 0.90 6.15 -51.93 -0.32 0.58 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.78 7.73 -51.92 -0.40 0.38 16 36 H 0.12 2.32 6.25 -52.48 -0.33 1.99 16 LS Contribution 298.18 15.07 4.49 4.49 Total: -1.00 -32.02 298.18 -7.99 -40.01 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -4.04 Total: 10.75 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -4.25 Total: -26.85 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.73 Total: -38.00 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.25 Total: -7.05 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.02 -7.99 -40.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309227399.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.812 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds