Wall clock time and date at job start Mon Mar 30 2020 06:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99842 * 2 1 4 4 H 1.48507 * 109.47121 * 270.00423 * 3 2 1 5 5 H 1.48506 * 109.46792 * 29.99796 * 3 2 1 6 6 H 1.48493 * 109.47232 * 150.00093 * 3 2 1 7 7 C 1.37875 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99959 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00060 * 179.97438 * 7 2 1 10 10 C 1.50702 * 109.47270 * 180.02562 * 9 7 2 11 11 C 1.38289 * 119.94227 * 270.02595 * 10 9 7 12 12 C 1.38130 * 120.05421 * 179.97438 * 11 10 9 13 13 C 1.38759 * 119.94188 * 359.81231 * 12 11 10 14 14 O 1.35897 * 120.05188 * 180.23153 * 13 12 11 15 15 C 1.38708 * 119.88750 * 0.43884 * 13 12 11 16 16 C 1.50703 * 120.02535 * 179.79224 * 15 13 12 17 17 H 1.08992 * 109.46894 * 39.72240 * 16 15 13 18 18 N 1.46906 * 109.47109 * 159.72504 * 16 15 13 19 19 C 1.52997 * 109.47084 * 279.72210 * 16 15 13 20 20 C 1.53000 * 117.50171 * 248.74834 * 19 16 15 21 21 C 1.52995 * 117.50170 * 180.08790 * 19 16 15 22 22 C 1.38166 * 119.94462 * 359.51575 * 15 13 12 23 23 H 0.96997 * 120.00197 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46974 * 60.00564 * 9 7 2 25 25 H 1.08998 * 109.47426 * 300.00162 * 9 7 2 26 26 H 1.07998 * 119.97703 * 359.97438 * 11 10 9 27 27 H 1.08000 * 120.02510 * 180.02562 * 12 11 10 28 28 H 0.96707 * 113.99676 * 270.20310 * 14 13 12 29 29 H 1.00902 * 110.99567 * 59.99488 * 18 16 15 30 30 H 1.00901 * 111.00013 * 183.95340 * 18 16 15 31 31 H 1.09002 * 115.55400 * 34.41705 * 19 16 15 32 32 H 1.09007 * 117.49797 * 359.97438 * 20 19 16 33 33 H 1.09005 * 117.50002 * 145.02041 * 20 19 16 34 34 H 1.09002 * 117.50298 * 214.98111 * 21 19 16 35 35 H 1.09008 * 117.49705 * 0.02562 * 21 19 16 36 36 H 1.08007 * 119.97178 * 180.25132 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0141 -2.6147 0.0001 11 6 4.2442 -3.2653 1.1984 12 6 4.7042 -4.5677 1.2013 13 6 4.9317 -5.2245 0.0003 14 8 5.3799 -6.5074 0.0005 15 6 4.7051 -4.5678 -1.2003 16 6 4.9557 -5.2766 -2.5065 17 1 4.6212 -6.3110 -2.4285 18 7 4.2140 -4.6016 -3.5800 19 6 6.4521 -5.2470 -2.8239 20 6 6.9063 -4.3911 -4.0080 21 6 6.9129 -5.9177 -4.1195 22 6 4.2441 -3.2654 -1.1977 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6795 0.8895 25 1 3.8746 -0.6806 -0.8905 26 1 4.0640 -2.7548 2.1329 27 1 4.8834 -5.0756 2.1374 28 1 6.3436 -6.5874 0.0023 29 1 4.5062 -3.6402 -3.6722 30 1 4.3138 -5.0954 -4.4542 31 1 7.1168 -5.3071 -1.9621 32 1 6.1390 -3.8494 -4.5611 33 1 7.8701 -3.8885 -3.9253 34 1 7.8808 -6.4188 -4.1102 35 1 6.1498 -6.3798 -4.7460 36 1 4.0636 -2.7550 -2.1323 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309227399.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:42 Heat of formation + Delta-G solvation = -18.784233 kcal Electronic energy + Delta-G solvation = -17662.859471 eV Core-core repulsion = 14918.646395 eV Total energy + Delta-G solvation = -2744.213076 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.12849 -38.95968 -37.85815 -35.18390 -34.34179 -32.64765 -31.19305 -28.97921 -26.89497 -24.70917 -23.31232 -23.03692 -21.95746 -20.52512 -19.21247 -18.95965 -17.31104 -17.02270 -16.83127 -16.27705 -16.04374 -15.60061 -15.44931 -14.82936 -14.50932 -14.07007 -13.82696 -13.59177 -13.42144 -13.06701 -12.87138 -12.67180 -12.41564 -12.25734 -11.84583 -11.79028 -11.54836 -11.42661 -11.18306 -10.83923 -10.77642 -9.78228 -9.57895 -9.12265 -8.28590 -6.34085 0.44278 0.52317 1.36875 1.38989 1.50936 2.36154 2.79379 2.85457 3.05544 3.38138 3.62773 3.64145 3.90572 4.01379 4.09182 4.18360 4.26986 4.44781 4.58632 4.64363 4.74072 4.86038 4.98068 4.99269 5.02638 5.11758 5.17362 5.20922 5.31947 5.49781 5.57498 5.60420 5.96044 6.02879 6.23041 6.28480 6.56703 6.72343 6.93754 7.29204 8.88380 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.024962 B = 0.006089 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.448312 B = 4597.643841 C = 5177.384154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.007 3.993 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.520 4.520 8 H 0.023 0.977 9 C 0.023 3.977 10 C -0.071 4.071 11 C -0.123 4.123 12 C -0.144 4.144 13 C 0.087 3.913 14 O -0.497 6.497 15 C -0.101 4.101 16 C 0.176 3.824 17 H 0.090 0.910 18 N -0.850 5.850 19 C -0.185 4.185 20 C -0.189 4.189 21 C -0.163 4.163 22 C -0.100 4.100 23 H 0.267 0.733 24 H 0.032 0.968 25 H 0.030 0.970 26 H 0.123 0.877 27 H 0.145 0.855 28 H 0.401 0.599 29 H 0.345 0.655 30 H 0.352 0.648 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.290 -10.167 -5.645 21.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.167 1.167 7 C -0.558 4.558 8 H 0.041 0.959 9 C -0.014 4.014 10 C -0.071 4.071 11 C -0.141 4.141 12 C -0.163 4.163 13 C 0.043 3.957 14 O -0.309 6.309 15 C -0.102 4.102 16 C 0.064 3.936 17 H 0.108 0.892 18 N -0.384 5.384 19 C -0.205 4.205 20 C -0.226 4.226 21 C -0.200 4.200 22 C -0.118 4.118 23 H 0.076 0.924 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.141 0.859 27 H 0.163 0.837 28 H 0.259 0.741 29 H 0.161 0.839 30 H 0.167 0.833 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 16.889 -10.356 -5.229 20.490 hybrid contribution 0.891 1.072 -0.244 1.415 sum 17.780 -9.285 -5.473 20.792 Atomic orbital electron populations 1.70071 1.08425 1.28264 1.52351 1.26009 0.95595 1.03454 0.93913 0.85623 0.79506 0.77916 0.79406 1.18890 1.20877 1.16744 1.21157 0.90932 0.92866 1.50806 0.95883 1.18626 0.94129 0.91055 0.97566 1.20210 0.95807 0.97368 0.93744 1.21043 1.00050 0.95124 0.97850 1.21490 1.02058 0.94189 0.98514 1.18124 1.01830 0.84376 0.91414 1.84775 1.28357 1.21323 1.96406 1.20141 1.01318 0.93734 0.94971 1.19532 0.89517 0.96981 0.87558 0.89249 1.58881 1.62634 1.07109 1.09760 1.23056 0.96808 1.06972 0.93641 1.23151 1.03375 0.94435 1.01623 1.23052 1.03520 0.94617 0.98788 1.20737 0.99196 0.94399 0.97491 0.92377 0.94948 0.95163 0.85901 0.83708 0.74108 0.83874 0.83319 0.87603 0.88720 0.88116 0.87357 0.88284 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 2 C 0.01 0.42 5.47 84.65 0.46 0.88 16 3 Si 0.95 44.12 27.47 68.60 1.88 46.01 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.24 -10.39 6.54 99.48 0.65 -9.74 16 7 C -0.52 -30.86 9.65 25.60 0.25 -30.61 16 8 H 0.02 1.55 7.98 -2.91 -0.02 1.52 16 9 C 0.02 1.13 4.17 29.10 0.12 1.25 16 10 C -0.07 -3.04 5.07 -19.85 -0.10 -3.14 16 11 C -0.12 -4.68 9.69 22.26 0.22 -4.46 16 12 C -0.14 -4.63 9.99 22.37 0.22 -4.41 16 13 C 0.09 2.67 6.68 22.51 0.15 2.82 16 14 O -0.50 -12.07 12.73 -92.39 -1.18 -13.25 16 15 C -0.10 -3.25 5.08 -19.77 -0.10 -3.35 16 16 C 0.18 4.47 3.03 44.17 0.13 4.60 16 17 H 0.09 2.39 7.84 -2.39 -0.02 2.37 16 18 N -0.85 -21.59 8.00 -171.80 -1.37 -22.96 16 19 C -0.18 -3.52 5.69 -10.80 -0.06 -3.58 16 20 C -0.19 -3.19 9.62 30.62 0.29 -2.89 16 21 C -0.16 -2.38 9.94 30.62 0.30 -2.07 16 22 C -0.10 -3.83 8.90 22.25 0.20 -3.63 16 23 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 24 H 0.03 1.51 7.14 -2.39 -0.02 1.49 16 25 H 0.03 1.39 7.51 -2.39 -0.02 1.37 16 26 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 27 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 28 H 0.40 5.59 9.06 -74.05 -0.67 4.92 16 29 H 0.35 8.70 5.80 -89.69 -0.52 8.18 16 30 H 0.35 7.00 8.01 -89.69 -0.72 6.28 16 31 H 0.11 1.93 8.11 -2.39 -0.02 1.91 16 32 H 0.09 1.62 6.15 -2.38 -0.01 1.60 16 33 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 1.35 7.73 -2.38 -0.02 1.34 16 36 H 0.12 4.58 6.25 -2.91 -0.02 4.56 16 Total: -1.00 -71.20 298.18 0.87 -70.32 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: -0.85 Total: 28.86 kcal Atomic # 6 Polarization: -50.69 SS G_CDS: 2.09 Total: -48.60 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -1.07 Total: -83.34 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -1.18 Total: -13.25 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.01 kcal Total: -71.20 0.87 -70.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309227399.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.538 kcal (2) G-P(sol) polarization free energy of solvation -71.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds