Wall clock time and date at job start Mon Mar 30 2020 06:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 11 11 N 1.46900 * 109.46946 * 299.99661 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.38182 * 120.08202 * 79.99956 * 12 9 7 14 14 C 1.38430 * 119.71168 * 180.12855 * 13 12 9 15 15 O 1.35899 * 119.78961 * 179.97438 * 14 13 12 16 16 C 1.39404 * 120.42483 * 0.02562 * 14 13 12 17 17 C 1.37564 * 119.64824 * 359.74616 * 16 14 13 18 18 C 1.37953 * 120.08677 * 259.72586 * 12 9 7 19 19 C 1.50640 * 122.55493 * 180.46448 * 17 16 14 20 20 C 1.52733 * 110.58244 * 342.06613 * 19 17 16 21 21 C 1.53330 * 108.37778 * 51.17155 * 20 19 17 22 22 C 1.50625 * 117.76239 * 179.37301 * 16 14 13 23 23 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 24 24 H 1.00907 * 110.99867 * 176.04554 * 11 9 7 25 25 H 1.00896 * 111.00376 * 299.99893 * 11 9 7 26 26 H 1.07995 * 120.14241 * 0.14509 * 13 12 9 27 27 H 0.96708 * 113.99750 * 89.99757 * 15 14 13 28 28 H 1.07998 * 119.66611 * 359.97438 * 18 12 9 29 29 H 1.09007 * 109.25764 * 102.34713 * 19 17 16 30 30 H 1.09000 * 109.25483 * 221.77650 * 19 17 16 31 31 H 1.09002 * 109.68286 * 170.89550 * 20 19 17 32 32 H 1.09000 * 109.67669 * 291.41725 * 20 19 17 33 33 H 1.09005 * 109.67317 * 49.90639 * 21 20 19 34 34 H 1.08996 * 109.67905 * 170.45685 * 21 20 19 35 35 H 1.08998 * 109.24894 * 282.88106 * 22 16 14 36 36 H 1.08999 * 109.25123 * 42.30054 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 7 0.4061 -2.5767 1.1997 12 6 2.2304 -3.6445 0.0005 13 6 2.8384 -4.0360 1.1781 14 6 3.7388 -5.0874 1.1688 15 8 4.3380 -5.4734 2.3259 16 6 4.0356 -5.7522 -0.0200 17 6 3.4243 -5.3618 -1.1889 18 6 2.5180 -4.3085 -1.1740 19 6 3.6887 -6.0401 -2.5077 20 6 4.9822 -6.8498 -2.4453 21 6 4.9265 -7.7554 -1.2092 22 6 5.0346 -6.8781 0.0362 23 1 -0.4850 -0.8401 -0.0004 24 1 -0.1578 -3.4134 1.1912 25 1 0.9638 -2.5251 2.0390 26 1 2.6118 -3.5242 2.1016 27 1 3.8511 -6.1519 2.8136 28 1 2.0377 -4.0035 -2.0919 29 1 2.8585 -6.7065 -2.7421 30 1 3.7745 -5.2853 -3.2894 31 1 5.0771 -7.4600 -3.3435 32 1 5.8345 -6.1747 -2.3683 33 1 3.9816 -8.2987 -1.1946 34 1 5.7563 -8.4617 -1.2339 35 1 6.0407 -6.4631 0.0972 36 1 4.8427 -7.4850 0.9211 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309258979.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:29 Heat of formation + Delta-G solvation = -44.591562 kcal Electronic energy + Delta-G solvation = -17946.644976 eV Core-core repulsion = 15201.312810 eV Total energy + Delta-G solvation = -2745.332166 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.07075 -37.10160 -36.55204 -33.88183 -31.43927 -31.30521 -29.23739 -28.21285 -25.51478 -23.43875 -22.92611 -21.68108 -20.99843 -18.84124 -17.64142 -16.74193 -15.87610 -15.60174 -14.85186 -14.61177 -14.29243 -13.91737 -13.76390 -13.60880 -13.18338 -12.66593 -12.44981 -12.39748 -12.12366 -11.54012 -11.29986 -10.97883 -10.88485 -10.82584 -10.73021 -10.46699 -10.30153 -10.06608 -9.78486 -8.81664 -8.32704 -8.10457 -7.79328 -7.48173 -6.17762 -4.00817 1.71400 1.83893 3.49168 3.51943 3.67779 4.07109 4.48835 4.62403 4.76046 4.83088 4.89147 5.21629 5.31739 5.46374 5.53941 5.58763 5.62561 5.67070 5.80389 5.90094 5.96464 6.03987 6.04328 6.12377 6.20151 6.28477 6.31659 6.57287 6.84432 6.93407 6.99189 7.29968 7.38943 7.93247 7.99707 8.29194 8.65508 8.75153 9.05797 9.82447 11.21999 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.028883 B = 0.006118 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.192202 B = 4575.451247 C = 4843.668310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.038 3.962 3 Si 1.066 2.934 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.607 4.607 8 H 0.046 0.954 9 C 0.237 3.763 10 H 0.039 0.961 11 N -0.829 5.829 12 C -0.052 4.052 13 C -0.143 4.143 14 C 0.095 3.905 15 O -0.499 6.499 16 C -0.127 4.127 17 C -0.066 4.066 18 C -0.131 4.131 19 C -0.077 4.077 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.065 4.065 23 H 0.289 0.711 24 H 0.301 0.699 25 H 0.326 0.674 26 H 0.122 0.878 27 H 0.379 0.621 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.246 -15.251 -1.384 16.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.171 4.171 3 Si 0.895 3.105 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.646 4.646 8 H 0.065 0.935 9 C 0.129 3.871 10 H 0.056 0.944 11 N -0.356 5.356 12 C -0.054 4.054 13 C -0.162 4.162 14 C 0.051 3.949 15 O -0.308 6.308 16 C -0.127 4.127 17 C -0.067 4.067 18 C -0.149 4.149 19 C -0.114 4.114 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.102 4.102 23 H 0.102 0.898 24 H 0.112 0.888 25 H 0.139 0.861 26 H 0.140 0.860 27 H 0.233 0.767 28 H 0.136 0.864 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.109 -12.504 -1.817 14.498 hybrid contribution 0.485 -2.770 0.518 2.859 sum 7.594 -15.274 -1.300 17.107 Atomic orbital electron populations 1.70531 1.06810 1.32756 1.42427 1.25629 0.96596 1.01817 0.93091 0.83610 0.74709 0.75484 0.76674 1.21573 1.21724 1.21084 1.21696 0.93453 0.90359 1.59102 0.93532 1.18377 0.88032 0.90540 0.90198 0.94370 1.59464 1.28597 1.42217 1.05351 1.21297 0.96937 0.95467 0.91731 1.21133 0.97531 0.98024 0.99538 1.18435 0.95202 0.95974 0.85263 1.84829 1.50385 1.61134 1.34431 1.19605 1.01098 0.99363 0.92648 1.19405 0.96813 0.96537 0.93913 1.21101 0.99285 0.96112 0.98434 1.20430 0.97733 0.98765 0.94505 1.21538 0.97993 0.98304 0.97790 1.21548 1.01689 0.97526 0.94820 1.20185 0.97786 0.94439 0.97814 0.89795 0.88830 0.86078 0.86015 0.76675 0.86448 0.91005 0.90818 0.91776 0.91682 0.91887 0.91867 0.91215 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.50 55.43 0.75 -26.21 16 2 C 0.04 1.10 5.39 -17.82 -0.10 1.01 16 3 Si 1.07 25.71 29.90 -169.99 -5.08 20.62 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.61 -17.12 8.70 -34.44 -0.30 -17.42 16 8 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 9 C 0.24 5.86 2.47 -70.01 -0.17 5.69 16 10 H 0.04 1.02 7.86 -51.93 -0.41 0.61 16 11 N -0.83 -18.98 7.62 -6.65 -0.05 -19.03 16 12 C -0.05 -1.11 4.87 -104.75 -0.51 -1.62 16 13 C -0.14 -2.85 9.23 -39.53 -0.36 -3.22 16 14 C 0.10 1.68 6.66 -39.08 -0.26 1.42 16 15 O -0.50 -7.56 12.53 -19.42 -0.24 -7.80 16 16 C -0.13 -2.06 5.75 -104.47 -0.60 -2.66 16 17 C -0.07 -1.11 5.74 -104.63 -0.60 -1.71 16 18 C -0.13 -2.52 9.23 -39.42 -0.36 -2.89 16 19 C -0.08 -1.01 5.67 -28.05 -0.16 -1.17 16 20 C -0.12 -1.32 5.98 -26.70 -0.16 -1.48 16 21 C -0.12 -1.27 5.98 -26.70 -0.16 -1.43 16 22 C -0.07 -0.84 5.28 -28.06 -0.15 -0.99 16 23 H 0.29 8.73 6.39 -40.82 -0.26 8.47 16 24 H 0.30 6.06 9.06 -39.29 -0.36 5.70 16 25 H 0.33 7.26 7.35 -39.29 -0.29 6.97 16 26 H 0.12 2.43 6.68 -52.49 -0.35 2.08 16 27 H 0.38 3.83 9.06 45.56 0.41 4.24 16 28 H 0.12 2.19 8.02 -52.49 -0.42 1.77 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.76 7.76 -51.93 -0.40 0.36 16 LS Contribution 292.64 15.07 4.41 4.41 Total: -1.00 -31.81 292.64 -8.35 -40.16 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -4.23 Total: 14.32 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -3.89 Total: -26.47 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.70 Total: -45.24 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.24 Total: -7.80 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.81 -8.35 -40.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309258979.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.432 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds