Wall clock time and date at job start Mon Mar 30 2020 06:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99878 * 2 1 4 4 H 1.48499 * 109.47358 * 264.81462 * 3 2 1 5 5 H 1.48494 * 109.47485 * 24.81612 * 3 2 1 6 6 H 1.48507 * 109.46914 * 144.81627 * 3 2 1 7 7 C 1.37878 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99733 * 354.69107 * 7 2 1 9 9 C 1.50701 * 119.99828 * 174.96625 * 7 2 1 10 10 H 1.08995 * 109.47015 * 3.83610 * 9 7 2 11 11 C 1.50699 * 109.46915 * 243.83376 * 9 7 2 12 12 C 1.38240 * 119.99872 * 285.30274 * 11 9 7 13 13 C 1.38238 * 119.99395 * 179.79210 * 12 11 9 14 14 C 1.38241 * 120.00155 * 0.43754 * 13 12 11 15 15 C 1.38229 * 120.00124 * 359.81678 * 14 13 12 16 16 C 1.38233 * 119.99955 * 105.57957 * 11 9 7 17 17 N 1.46903 * 109.46852 * 123.83473 * 9 7 2 18 18 C 1.46991 * 110.99956 * 300.00184 * 17 9 7 19 19 C 1.53134 * 109.24405 * 178.60820 * 18 17 9 20 20 C 1.53148 * 109.16316 * 58.02653 * 19 18 17 21 21 C 1.53136 * 109.16311 * 302.51697 * 20 19 18 22 22 O 1.43002 * 109.23122 * 57.07255 * 21 20 19 23 23 H 0.97005 * 119.99480 * 359.97438 * 1 2 3 24 24 H 1.07995 * 120.00205 * 359.97438 * 12 11 9 25 25 H 1.07999 * 119.99396 * 180.27791 * 13 12 11 26 26 H 1.08000 * 119.99446 * 179.83535 * 14 13 12 27 27 H 1.07991 * 120.00250 * 180.02562 * 15 14 13 28 28 H 1.07999 * 120.00110 * 359.97308 * 16 11 9 29 29 H 1.09001 * 109.50917 * 298.53347 * 18 17 9 30 30 H 1.08993 * 109.51455 * 58.67601 * 18 17 9 31 31 H 1.08995 * 109.52345 * 177.93318 * 19 18 17 32 32 H 1.09003 * 109.52208 * 298.12524 * 19 18 17 33 33 H 1.09002 * 109.52220 * 62.41575 * 20 19 18 34 34 H 1.08997 * 109.52851 * 182.60736 * 20 19 18 35 35 H 1.09001 * 109.51197 * 176.99282 * 21 20 19 36 36 H 1.09001 * 109.50805 * 297.09383 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6062 1.9832 -1.3943 5 1 1.3962 2.6818 0.5876 6 1 3.4877 1.4742 0.8068 7 6 2.0045 -1.1941 0.0005 8 1 1.4680 -2.1273 0.0875 9 6 3.5072 -1.1966 -0.1140 10 1 3.8729 -0.1698 -0.1185 11 6 3.9122 -1.8799 -1.3946 12 6 3.8342 -3.2562 -1.4983 13 6 4.2017 -3.8825 -2.6746 14 6 4.6556 -3.1334 -3.7440 15 6 4.7385 -1.7576 -3.6386 16 6 4.3670 -1.1309 -2.4637 17 7 4.0841 -1.9169 1.0290 18 6 3.7092 -1.2773 2.2983 19 6 4.3013 -2.0784 3.4613 20 6 5.8227 -2.1485 3.3004 21 6 6.1563 -2.7800 1.9458 22 8 5.5392 -2.0169 0.9056 23 1 -0.4849 0.8401 0.0004 24 1 3.4835 -3.8417 -0.6614 25 1 4.1365 -4.9574 -2.7571 26 1 4.9452 -3.6230 -4.6621 27 1 5.0927 -1.1723 -4.4741 28 1 4.4317 -0.0560 -2.3814 29 1 4.0985 -0.2595 2.3220 30 1 2.6232 -1.2546 2.3876 31 1 4.0569 -1.5877 4.4034 32 1 3.8877 -3.0869 3.4568 33 1 6.2405 -1.1428 3.3462 34 1 6.2460 -2.7565 4.0999 35 1 7.2368 -2.7839 1.8022 36 1 5.7817 -3.8032 1.9190 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309269381.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:44 Heat of formation + Delta-G solvation = 23.177268 kcal Electronic energy + Delta-G solvation = -18501.583363 eV Core-core repulsion = 15759.189874 eV Total energy + Delta-G solvation = -2742.393489 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.65560 -37.62639 -34.39049 -32.78109 -32.08665 -30.35063 -30.05683 -27.37611 -25.12514 -23.73388 -22.23725 -21.73775 -19.91944 -19.41743 -17.22456 -16.22866 -15.69392 -15.41172 -14.74131 -14.29876 -14.26739 -13.75312 -13.68174 -13.19814 -12.89940 -12.64562 -12.44518 -12.20682 -12.08398 -11.75447 -11.16041 -11.05063 -10.76842 -10.59254 -10.37333 -10.18075 -10.08551 -9.84279 -9.72844 -9.27930 -8.82587 -8.11893 -7.78820 -7.53429 -6.34113 -4.35291 2.19983 2.25463 3.11791 3.20651 3.22583 3.57893 4.18233 4.64391 5.06361 5.18307 5.22163 5.30061 5.42498 5.60075 5.65318 5.78266 5.83303 5.90279 6.05499 6.12436 6.14198 6.25578 6.32183 6.34306 6.44268 6.62770 6.64682 6.72086 6.80905 6.88877 7.22173 7.27476 7.30174 7.46715 7.77230 7.82813 8.02064 8.33447 8.76954 9.25665 10.76670 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.013011 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.651180 B = 2151.554951 C = 3524.926530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.084 3.916 3 Si 0.866 3.134 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.493 4.493 8 H 0.088 0.912 9 C 0.202 3.798 10 H 0.026 0.974 11 C -0.017 4.017 12 C -0.087 4.087 13 C -0.129 4.129 14 C -0.147 4.147 15 C -0.126 4.126 16 C -0.130 4.130 17 N -0.334 5.334 18 C 0.025 3.975 19 C -0.117 4.117 20 C -0.154 4.154 21 C 0.067 3.933 22 O -0.278 6.278 23 H 0.270 0.730 24 H 0.121 0.879 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.031 0.969 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.465 -3.606 1.659 10.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.122 4.122 3 Si 0.693 3.307 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.532 4.532 8 H 0.106 0.894 9 C 0.097 3.903 10 H 0.044 0.956 11 C -0.018 4.018 12 C -0.106 4.106 13 C -0.148 4.148 14 C -0.166 4.166 15 C -0.144 4.144 16 C -0.149 4.149 17 N -0.106 5.106 18 C -0.104 4.104 19 C -0.155 4.155 20 C -0.192 4.192 21 C -0.012 4.012 22 O -0.278 6.278 23 H 0.080 0.920 24 H 0.139 0.861 25 H 0.127 0.873 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.049 0.951 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.265 -3.871 1.501 10.152 hybrid contribution 0.588 1.806 0.216 1.911 sum 9.852 -2.065 1.717 10.212 Atomic orbital electron populations 1.69853 1.06085 1.27574 1.47709 1.25034 0.94796 0.98666 0.93714 0.87024 0.80201 0.83966 0.79520 1.19440 1.20878 1.19059 1.20634 0.86266 0.95409 1.50915 0.89359 1.19093 0.95072 0.91407 0.84736 0.95602 1.20004 0.92298 0.93765 0.95727 1.20869 0.98420 0.94419 0.96858 1.21033 1.00808 0.98945 0.93964 1.20839 1.03231 0.94070 0.98421 1.20875 1.01582 0.94666 0.97263 1.20916 1.00907 0.99165 0.93874 1.69170 0.87489 1.50756 1.03216 1.22557 1.02788 0.95419 0.89623 1.21603 0.94705 1.01323 0.97846 1.22157 0.97312 1.01301 0.98435 1.22338 0.96359 0.95164 0.87311 1.90841 1.16495 1.74169 1.46274 0.91964 0.86096 0.87256 0.87457 0.87338 0.87548 0.95088 0.87367 0.91897 0.91171 0.92142 0.91718 0.90170 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.06 13.96 55.43 0.77 -24.28 16 2 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 3 Si 0.87 20.62 27.07 -169.99 -4.60 16.02 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.22 6.55 56.52 0.37 -5.85 16 7 C -0.49 -13.12 7.55 -34.44 -0.26 -13.38 16 8 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 9 C 0.20 4.85 1.92 -70.01 -0.13 4.72 16 10 H 0.03 0.65 4.44 -51.93 -0.23 0.42 16 11 C -0.02 -0.38 4.31 -104.62 -0.45 -0.83 16 12 C -0.09 -1.83 9.26 -39.58 -0.37 -2.19 16 13 C -0.13 -2.35 10.05 -39.58 -0.40 -2.74 16 14 C -0.15 -2.54 10.05 -39.58 -0.40 -2.94 16 15 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 16 C -0.13 -2.75 9.67 -39.58 -0.38 -3.13 16 17 N -0.33 -7.29 4.53 -109.05 -0.49 -7.79 16 18 C 0.02 0.50 5.49 -3.71 -0.02 0.48 16 19 C -0.12 -1.86 6.11 -26.59 -0.16 -2.02 16 20 C -0.15 -2.23 6.13 -26.58 -0.16 -2.39 16 21 C 0.07 1.07 7.10 37.23 0.26 1.33 16 22 O -0.28 -5.77 10.58 -13.97 -0.15 -5.92 16 23 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.12 2.54 7.88 -52.49 -0.41 2.13 16 25 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 26 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.11 2.19 8.00 -52.49 -0.42 1.77 16 29 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 30 H 0.11 2.35 7.05 -51.93 -0.37 1.98 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 294.90 15.07 4.44 4.44 Total: -1.00 -28.78 294.90 -8.24 -37.02 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.24 Total: 4.13 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -2.97 Total: -23.62 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.28 Total: -32.07 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.15 Total: -5.92 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.60 Total: 16.02 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.78 -8.24 -37.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309269381.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.197 kcal (2) G-P(sol) polarization free energy of solvation -28.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds