Wall clock time and date at job start Mon Mar 30 2020 06:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99878 * 2 1 4 4 H 1.48499 * 109.47358 * 264.81462 * 3 2 1 5 5 H 1.48494 * 109.47485 * 24.81612 * 3 2 1 6 6 H 1.48507 * 109.46914 * 144.81627 * 3 2 1 7 7 C 1.37878 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99733 * 354.69107 * 7 2 1 9 9 C 1.50701 * 119.99828 * 174.96625 * 7 2 1 10 10 H 1.08995 * 109.47015 * 3.83610 * 9 7 2 11 11 C 1.50699 * 109.46915 * 243.83376 * 9 7 2 12 12 C 1.38240 * 119.99872 * 285.30274 * 11 9 7 13 13 C 1.38238 * 119.99395 * 179.79210 * 12 11 9 14 14 C 1.38241 * 120.00155 * 0.43754 * 13 12 11 15 15 C 1.38229 * 120.00124 * 359.81678 * 14 13 12 16 16 C 1.38233 * 119.99955 * 105.57957 * 11 9 7 17 17 N 1.46903 * 109.46852 * 123.83473 * 9 7 2 18 18 C 1.46991 * 110.99956 * 300.00184 * 17 9 7 19 19 C 1.53134 * 109.24405 * 178.60820 * 18 17 9 20 20 C 1.53148 * 109.16316 * 58.02653 * 19 18 17 21 21 C 1.53136 * 109.16311 * 302.51697 * 20 19 18 22 22 O 1.43002 * 109.23122 * 57.07255 * 21 20 19 23 23 H 0.97005 * 119.99480 * 359.97438 * 1 2 3 24 24 H 1.07995 * 120.00205 * 359.97438 * 12 11 9 25 25 H 1.07999 * 119.99396 * 180.27791 * 13 12 11 26 26 H 1.08000 * 119.99446 * 179.83535 * 14 13 12 27 27 H 1.07991 * 120.00250 * 180.02562 * 15 14 13 28 28 H 1.07999 * 120.00110 * 359.97308 * 16 11 9 29 29 H 1.09001 * 109.50917 * 298.53347 * 18 17 9 30 30 H 1.08993 * 109.51455 * 58.67601 * 18 17 9 31 31 H 1.08995 * 109.52345 * 177.93318 * 19 18 17 32 32 H 1.09003 * 109.52208 * 298.12524 * 19 18 17 33 33 H 1.09002 * 109.52220 * 62.41575 * 20 19 18 34 34 H 1.08997 * 109.52851 * 182.60736 * 20 19 18 35 35 H 1.09001 * 109.51197 * 176.99282 * 21 20 19 36 36 H 1.09001 * 109.50805 * 297.09383 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6062 1.9832 -1.3943 5 1 1.3962 2.6818 0.5876 6 1 3.4877 1.4742 0.8068 7 6 2.0045 -1.1941 0.0005 8 1 1.4680 -2.1273 0.0875 9 6 3.5072 -1.1966 -0.1140 10 1 3.8729 -0.1698 -0.1185 11 6 3.9122 -1.8799 -1.3946 12 6 3.8342 -3.2562 -1.4983 13 6 4.2017 -3.8825 -2.6746 14 6 4.6556 -3.1334 -3.7440 15 6 4.7385 -1.7576 -3.6386 16 6 4.3670 -1.1309 -2.4637 17 7 4.0841 -1.9169 1.0290 18 6 3.7092 -1.2773 2.2983 19 6 4.3013 -2.0784 3.4613 20 6 5.8227 -2.1485 3.3004 21 6 6.1563 -2.7800 1.9458 22 8 5.5392 -2.0169 0.9056 23 1 -0.4849 0.8401 0.0004 24 1 3.4835 -3.8417 -0.6614 25 1 4.1365 -4.9574 -2.7571 26 1 4.9452 -3.6230 -4.6621 27 1 5.0927 -1.1723 -4.4741 28 1 4.4317 -0.0560 -2.3814 29 1 4.0985 -0.2595 2.3220 30 1 2.6232 -1.2546 2.3876 31 1 4.0569 -1.5877 4.4034 32 1 3.8877 -3.0869 3.4568 33 1 6.2405 -1.1428 3.3462 34 1 6.2460 -2.7565 4.0999 35 1 7.2368 -2.7839 1.8022 36 1 5.7817 -3.8032 1.9190 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309269381.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:43 Heat of formation + Delta-G solvation = 6.313863 kcal Electronic energy + Delta-G solvation = -18502.314615 eV Core-core repulsion = 15759.189874 eV Total energy + Delta-G solvation = -2743.124741 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.22422 -39.10208 -36.12080 -34.24026 -34.04043 -31.85440 -31.55411 -29.08352 -26.82815 -25.21271 -23.84692 -23.24641 -21.51094 -20.88885 -19.24420 -17.74948 -17.32978 -16.99071 -16.39530 -15.98774 -15.69421 -15.19676 -15.11154 -14.82755 -14.70513 -14.15430 -14.00469 -13.85312 -13.59468 -13.25687 -12.95319 -12.81425 -12.17198 -12.12919 -11.98885 -11.80629 -11.66454 -11.54850 -11.36160 -10.94198 -10.74072 -9.62720 -9.35759 -9.24176 -8.44263 -6.48411 0.67739 0.74235 1.20587 1.23357 1.30743 1.97272 2.17899 2.94467 3.17257 3.73195 3.95786 4.02046 4.10315 4.16208 4.28869 4.38687 4.42726 4.43361 4.57244 4.65401 4.83853 4.86413 4.90583 4.93123 4.99304 5.11559 5.16691 5.29106 5.32655 5.38254 5.40236 5.73905 5.78337 5.78951 6.01263 6.24104 6.36562 6.50461 6.59674 7.15592 8.70866 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.013011 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.651180 B = 2151.554951 C = 3524.926530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.039 3.961 3 Si 0.921 3.079 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.489 4.489 8 H 0.048 0.952 9 C 0.209 3.791 10 H 0.011 0.989 11 C -0.049 4.049 12 C -0.107 4.107 13 C -0.126 4.126 14 C -0.138 4.138 15 C -0.123 4.123 16 C -0.154 4.154 17 N -0.340 5.340 18 C 0.022 3.978 19 C -0.112 4.112 20 C -0.146 4.146 21 C 0.054 3.946 22 O -0.291 6.291 23 H 0.273 0.727 24 H 0.107 0.893 25 H 0.142 0.858 26 H 0.151 0.849 27 H 0.142 0.858 28 H 0.101 0.899 29 H 0.017 0.983 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.031 -4.282 1.021 12.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.162 4.162 3 Si 0.745 3.255 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.528 4.528 8 H 0.066 0.934 9 C 0.102 3.898 10 H 0.028 0.972 11 C -0.050 4.050 12 C -0.125 4.125 13 C -0.144 4.144 14 C -0.155 4.155 15 C -0.140 4.140 16 C -0.173 4.173 17 N -0.111 5.111 18 C -0.106 4.106 19 C -0.150 4.150 20 C -0.184 4.184 21 C -0.023 4.023 22 O -0.294 6.294 23 H 0.082 0.918 24 H 0.125 0.875 25 H 0.159 0.841 26 H 0.168 0.832 27 H 0.160 0.840 28 H 0.120 0.880 29 H 0.036 0.964 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.831 -4.557 0.874 12.708 hybrid contribution -0.106 1.850 0.388 1.893 sum 11.725 -2.707 1.262 12.099 Atomic orbital electron populations 1.69962 1.07532 1.28477 1.50046 1.25647 0.95357 1.01651 0.93590 0.86149 0.79091 0.80394 0.79826 1.18706 1.19960 1.18859 1.20586 0.88073 0.93802 1.50337 0.93373 1.18865 0.93241 0.91121 0.86550 0.97157 1.20020 0.94689 0.94785 0.95533 1.20881 0.99732 0.93857 0.98035 1.21405 0.99325 1.00748 0.92932 1.21340 1.01080 0.93682 0.99446 1.21277 1.00176 0.95665 0.96921 1.21085 1.02163 0.99149 0.94882 1.68939 0.89104 1.50083 1.02949 1.22600 1.01465 0.95653 0.90912 1.21612 0.95897 1.00779 0.96712 1.22124 0.95855 1.01849 0.98585 1.22728 0.97555 0.94890 0.87162 1.90802 1.14876 1.75235 1.48502 0.91759 0.87523 0.84067 0.83176 0.83993 0.88043 0.96425 0.90055 0.89577 0.90978 0.92284 0.87961 0.87242 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.12 13.96 21.45 0.30 -54.82 16 2 C 0.04 2.20 5.47 84.65 0.46 2.67 16 3 Si 0.92 43.87 27.07 68.60 1.86 45.73 16 4 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.26 -12.33 6.55 99.48 0.65 -11.68 16 7 C -0.49 -27.50 7.55 25.60 0.19 -27.31 16 8 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 9 C 0.21 10.38 1.92 43.42 0.08 10.46 16 10 H 0.01 0.55 4.44 -2.39 -0.01 0.54 16 11 C -0.05 -2.28 4.31 -19.87 -0.09 -2.36 16 12 C -0.11 -4.48 9.26 22.27 0.21 -4.28 16 13 C -0.13 -4.28 10.05 22.27 0.22 -4.05 16 14 C -0.14 -4.22 10.05 22.27 0.22 -3.99 16 15 C -0.12 -4.13 10.05 22.27 0.22 -3.91 16 16 C -0.15 -6.45 9.67 22.27 0.22 -6.23 16 17 N -0.34 -15.26 4.53 -498.91 -2.26 -17.52 16 18 C 0.02 0.93 5.49 86.33 0.47 1.40 16 19 C -0.11 -3.43 6.11 30.69 0.19 -3.24 16 20 C -0.15 -3.83 6.13 30.69 0.19 -3.64 16 21 C 0.05 1.62 7.10 72.03 0.51 2.13 16 22 O -0.29 -11.99 10.58 -50.36 -0.53 -12.52 16 23 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 24 H 0.11 4.65 7.88 -2.91 -0.02 4.63 16 25 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 26 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 27 H 0.14 3.77 8.06 -2.92 -0.02 3.75 16 28 H 0.10 4.20 8.00 -2.91 -0.02 4.18 16 29 H 0.02 0.76 8.07 -2.39 -0.02 0.74 16 30 H 0.08 3.75 7.05 -2.39 -0.02 3.73 16 31 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -65.68 294.90 3.46 -62.22 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.99 Total: 19.26 kcal Atomic # 6 Polarization: -45.47 SS G_CDS: 3.11 Total: -42.36 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: -1.96 Total: -72.33 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.53 Total: -12.52 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.86 Total: 45.73 kcal Total: -65.68 3.46 -62.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309269381.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.536 kcal (2) G-P(sol) polarization free energy of solvation -65.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds