Wall clock time and date at job start Mon Mar 30 2020 06:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99835 * 2 1 4 4 H 1.48497 * 109.47153 * 269.99755 * 3 2 1 5 5 H 1.48506 * 109.47105 * 29.99964 * 3 2 1 6 6 H 1.48500 * 109.47333 * 149.99315 * 3 2 1 7 7 C 1.37876 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00145 * 183.13711 * 7 2 1 9 9 C 1.50701 * 119.99790 * 3.13625 * 7 2 1 10 10 H 1.09001 * 109.46907 * 335.13222 * 9 7 2 11 11 C 1.50695 * 109.46985 * 95.13947 * 9 7 2 12 12 C 1.38234 * 120.00315 * 74.15164 * 11 9 7 13 13 C 1.38237 * 119.99928 * 179.80850 * 12 11 9 14 14 C 1.38238 * 119.99855 * 0.39551 * 13 12 11 15 15 C 1.38235 * 120.00161 * 359.86016 * 14 13 12 16 16 C 1.38236 * 119.99893 * 359.95099 * 15 14 13 17 17 N 1.46904 * 109.46782 * 215.13643 * 9 7 2 18 18 C 1.46995 * 111.00190 * 60.00028 * 17 9 7 19 19 C 1.53126 * 109.24592 * 181.39130 * 18 17 9 20 20 C 1.53154 * 109.16264 * 301.97036 * 19 18 17 21 21 C 1.53123 * 109.16109 * 57.48191 * 20 19 18 22 22 O 1.43000 * 109.23990 * 302.93246 * 21 20 19 23 23 H 0.97006 * 120.00390 * 0.02562 * 1 2 3 24 24 H 1.07999 * 119.99657 * 359.97438 * 12 11 9 25 25 H 1.08000 * 119.99952 * 180.22765 * 13 12 11 26 26 H 1.08003 * 119.99524 * 179.83165 * 14 13 12 27 27 H 1.07997 * 119.99922 * 179.97438 * 15 14 13 28 28 H 1.08004 * 119.99966 * 180.02562 * 16 15 14 29 29 H 1.09009 * 109.50844 * 61.45924 * 18 17 9 30 30 H 1.09001 * 109.50991 * 301.32836 * 18 17 9 31 31 H 1.09000 * 109.52085 * 61.87393 * 19 18 17 32 32 H 1.09006 * 109.52581 * 182.06468 * 19 18 17 33 33 H 1.08997 * 109.52673 * 177.39166 * 20 19 18 34 34 H 1.09006 * 109.52043 * 297.58071 * 20 19 18 35 35 H 1.09006 * 109.51286 * 183.00002 * 21 20 19 36 36 H 1.08998 * 109.55181 * 62.88568 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0833 -1.1947 0.0517 9 6 1.2527 -2.4982 -0.0703 10 1 0.2441 -2.3577 0.3185 11 6 1.1794 -2.9585 -1.5033 12 6 2.3007 -3.4815 -2.1197 13 6 2.2323 -3.9073 -3.4330 14 6 1.0446 -3.8026 -4.1326 15 6 -0.0754 -3.2747 -3.5179 16 6 -0.0080 -2.8524 -2.2033 17 7 1.9509 -3.5101 0.7339 18 6 2.0417 -3.0941 2.1408 19 6 2.8050 -4.1588 2.9337 20 6 2.0832 -5.5025 2.7950 21 6 1.9766 -5.8650 1.3111 22 8 1.2979 -4.8149 0.6172 23 1 -0.4851 0.8401 -0.0004 24 1 3.2296 -3.5598 -1.5742 25 1 3.1074 -4.3194 -3.9134 26 1 0.9919 -4.1328 -5.1595 27 1 -1.0032 -3.1925 -4.0646 28 1 -0.8831 -2.4404 -1.7229 29 1 1.0387 -2.9827 2.5529 30 1 2.5703 -2.1431 2.2059 31 1 3.8184 -4.2476 2.5423 32 1 2.8432 -3.8727 3.9848 33 1 2.6468 -6.2745 3.3190 34 1 1.0841 -5.4252 3.2238 35 1 1.4170 -6.7941 1.2026 36 1 2.9756 -5.9909 0.8937 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309269382.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:47 Heat of formation + Delta-G solvation = 19.946799 kcal Electronic energy + Delta-G solvation = -18423.063728 eV Core-core repulsion = 15680.530156 eV Total energy + Delta-G solvation = -2742.533572 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.43660 -37.50389 -34.26269 -32.70611 -31.91191 -30.09315 -29.85463 -27.00215 -25.05143 -23.66882 -22.25384 -21.48494 -19.90596 -19.41175 -16.69839 -15.96304 -15.57490 -15.27989 -14.64655 -14.20452 -14.13962 -13.78019 -13.57767 -13.05170 -12.72543 -12.42286 -12.19049 -12.01134 -11.85588 -11.48797 -11.03097 -10.98024 -10.67659 -10.60164 -10.31052 -10.13377 -10.00593 -9.85285 -9.56696 -9.16623 -8.69402 -7.91341 -7.58682 -7.41866 -6.23445 -4.29068 2.42525 2.45106 3.21731 3.28247 3.30297 3.69532 4.31336 4.86871 5.13637 5.25046 5.28104 5.35263 5.54039 5.75484 5.86483 5.88535 5.93993 5.98788 6.17384 6.18641 6.31196 6.37143 6.51870 6.58766 6.66291 6.70935 6.75475 6.98097 7.07755 7.26195 7.42823 7.51262 7.60931 7.69992 7.83433 8.01813 8.11148 8.33484 8.83602 9.34854 10.83447 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.014206 B = 0.011673 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.557153 B = 2398.078255 C = 3851.185995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.070 3.930 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.501 4.501 8 H 0.068 0.932 9 C 0.224 3.776 10 H 0.051 0.949 11 C -0.011 4.011 12 C -0.096 4.096 13 C -0.137 4.137 14 C -0.152 4.152 15 C -0.132 4.132 16 C -0.113 4.113 17 N -0.338 5.338 18 C 0.031 3.969 19 C -0.118 4.118 20 C -0.153 4.153 21 C 0.067 3.933 22 O -0.273 6.273 23 H 0.266 0.734 24 H 0.116 0.884 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.115 0.885 29 H 0.034 0.966 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.088 -7.242 1.120 7.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.135 4.135 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.540 4.540 8 H 0.086 0.914 9 C 0.118 3.882 10 H 0.069 0.931 11 C -0.012 4.012 12 C -0.114 4.114 13 C -0.155 4.155 14 C -0.171 4.171 15 C -0.150 4.150 16 C -0.131 4.131 17 N -0.110 5.110 18 C -0.098 4.098 19 C -0.156 4.156 20 C -0.191 4.191 21 C -0.012 4.012 22 O -0.274 6.274 23 H 0.076 0.924 24 H 0.134 0.866 25 H 0.123 0.877 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.133 0.867 29 H 0.053 0.947 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.184 -7.243 0.835 7.956 hybrid contribution -0.331 1.065 0.424 1.193 sum 2.853 -6.178 1.260 6.921 Atomic orbital electron populations 1.69919 1.06066 1.27395 1.48265 1.24995 0.94970 0.99551 0.93971 0.86412 0.79755 0.82368 0.78497 1.20274 1.21067 1.19506 1.20771 0.93493 0.87833 1.51902 0.91369 1.18744 0.96452 0.86999 0.85968 0.93108 1.20186 0.91807 0.91624 0.97621 1.20866 0.98716 0.98194 0.93668 1.20960 0.97096 1.02137 0.95278 1.20784 0.93862 1.03475 0.98949 1.20920 0.97716 1.00964 0.95447 1.21035 0.98253 0.99632 0.94220 1.68944 1.41611 0.92335 1.08131 1.22485 0.99312 0.98753 0.89255 1.21625 0.99761 0.94763 0.99444 1.22145 1.00866 0.97992 0.98131 1.22325 0.97828 0.90295 0.90753 1.90866 1.50074 1.14118 1.72333 0.92380 0.86631 0.87724 0.87876 0.87697 0.86665 0.94742 0.88041 0.91472 0.92038 0.91878 0.92029 0.90215 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.11 12.77 55.43 0.71 -23.40 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.50 -13.05 6.99 -34.44 -0.24 -13.29 16 8 H 0.07 1.77 7.82 -52.48 -0.41 1.36 16 9 C 0.22 5.60 2.08 -70.02 -0.15 5.46 16 10 H 0.05 1.43 7.06 -51.93 -0.37 1.07 16 11 C -0.01 -0.27 4.31 -104.63 -0.45 -0.72 16 12 C -0.10 -2.11 9.27 -39.58 -0.37 -2.47 16 13 C -0.14 -2.64 10.05 -39.58 -0.40 -3.04 16 14 C -0.15 -2.85 10.05 -39.58 -0.40 -3.25 16 15 C -0.13 -2.64 10.05 -39.58 -0.40 -3.04 16 16 C -0.11 -2.60 9.67 -39.58 -0.38 -2.98 16 17 N -0.34 -7.52 4.55 -109.04 -0.50 -8.02 16 18 C 0.03 0.62 5.49 -3.71 -0.02 0.60 16 19 C -0.12 -1.87 6.11 -26.59 -0.16 -2.03 16 20 C -0.15 -2.25 6.13 -26.59 -0.16 -2.42 16 21 C 0.07 1.10 7.10 37.22 0.26 1.36 16 22 O -0.27 -5.88 10.59 -13.96 -0.15 -6.02 16 23 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 24 H 0.12 2.51 7.90 -52.49 -0.41 2.09 16 25 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 26 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 27 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.12 2.75 8.00 -52.48 -0.42 2.33 16 29 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.10 2.13 7.05 -51.93 -0.37 1.76 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 298.83 15.07 4.50 4.50 Total: -1.00 -28.02 298.83 -8.75 -36.77 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.34 Total: 4.77 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -2.96 Total: -24.07 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 0.21 Total: -31.42 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.15 Total: -6.02 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.02 -8.75 -36.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309269382.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.718 kcal (2) G-P(sol) polarization free energy of solvation -28.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds