Wall clock time and date at job start Mon Mar 30 2020 06:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99835 * 2 1 4 4 H 1.48497 * 109.47153 * 269.99755 * 3 2 1 5 5 H 1.48506 * 109.47105 * 29.99964 * 3 2 1 6 6 H 1.48500 * 109.47333 * 149.99315 * 3 2 1 7 7 C 1.37876 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00145 * 183.13711 * 7 2 1 9 9 C 1.50701 * 119.99790 * 3.13625 * 7 2 1 10 10 H 1.09001 * 109.46907 * 335.13222 * 9 7 2 11 11 C 1.50695 * 109.46985 * 95.13947 * 9 7 2 12 12 C 1.38234 * 120.00315 * 74.15164 * 11 9 7 13 13 C 1.38237 * 119.99928 * 179.80850 * 12 11 9 14 14 C 1.38238 * 119.99855 * 0.39551 * 13 12 11 15 15 C 1.38235 * 120.00161 * 359.86016 * 14 13 12 16 16 C 1.38236 * 119.99893 * 359.95099 * 15 14 13 17 17 N 1.46904 * 109.46782 * 215.13643 * 9 7 2 18 18 C 1.46995 * 111.00190 * 60.00028 * 17 9 7 19 19 C 1.53126 * 109.24592 * 181.39130 * 18 17 9 20 20 C 1.53154 * 109.16264 * 301.97036 * 19 18 17 21 21 C 1.53123 * 109.16109 * 57.48191 * 20 19 18 22 22 O 1.43000 * 109.23990 * 302.93246 * 21 20 19 23 23 H 0.97006 * 120.00390 * 0.02562 * 1 2 3 24 24 H 1.07999 * 119.99657 * 359.97438 * 12 11 9 25 25 H 1.08000 * 119.99952 * 180.22765 * 13 12 11 26 26 H 1.08003 * 119.99524 * 179.83165 * 14 13 12 27 27 H 1.07997 * 119.99922 * 179.97438 * 15 14 13 28 28 H 1.08004 * 119.99966 * 180.02562 * 16 15 14 29 29 H 1.09009 * 109.50844 * 61.45924 * 18 17 9 30 30 H 1.09001 * 109.50991 * 301.32836 * 18 17 9 31 31 H 1.09000 * 109.52085 * 61.87393 * 19 18 17 32 32 H 1.09006 * 109.52581 * 182.06468 * 19 18 17 33 33 H 1.08997 * 109.52673 * 177.39166 * 20 19 18 34 34 H 1.09006 * 109.52043 * 297.58071 * 20 19 18 35 35 H 1.09006 * 109.51286 * 183.00002 * 21 20 19 36 36 H 1.08998 * 109.55181 * 62.88568 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0833 -1.1947 0.0517 9 6 1.2527 -2.4982 -0.0703 10 1 0.2441 -2.3577 0.3185 11 6 1.1794 -2.9585 -1.5033 12 6 2.3007 -3.4815 -2.1197 13 6 2.2323 -3.9073 -3.4330 14 6 1.0446 -3.8026 -4.1326 15 6 -0.0754 -3.2747 -3.5179 16 6 -0.0080 -2.8524 -2.2033 17 7 1.9509 -3.5101 0.7339 18 6 2.0417 -3.0941 2.1408 19 6 2.8050 -4.1588 2.9337 20 6 2.0832 -5.5025 2.7950 21 6 1.9766 -5.8650 1.3111 22 8 1.2979 -4.8149 0.6172 23 1 -0.4851 0.8401 -0.0004 24 1 3.2296 -3.5598 -1.5742 25 1 3.1074 -4.3194 -3.9134 26 1 0.9919 -4.1328 -5.1595 27 1 -1.0032 -3.1925 -4.0646 28 1 -0.8831 -2.4404 -1.7229 29 1 1.0387 -2.9827 2.5529 30 1 2.5703 -2.1431 2.2059 31 1 3.8184 -4.2476 2.5423 32 1 2.8432 -3.8727 3.9848 33 1 2.6468 -6.2745 3.3190 34 1 1.0841 -5.4252 3.2238 35 1 1.4170 -6.7941 1.2026 36 1 2.9756 -5.9909 0.8937 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309269382.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:47 Heat of formation + Delta-G solvation = 4.484716 kcal Electronic energy + Delta-G solvation = -18423.734215 eV Core-core repulsion = 15680.530156 eV Total energy + Delta-G solvation = -2743.204059 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.09113 -39.03688 -36.03600 -34.20186 -33.77725 -31.68994 -31.47810 -28.72965 -26.81222 -25.18188 -23.90991 -23.11606 -21.59578 -20.85969 -18.64127 -17.57841 -17.28195 -16.90782 -16.34776 -15.87539 -15.62529 -15.29247 -15.05924 -14.63638 -14.41226 -14.04186 -13.80073 -13.65001 -13.48347 -13.13615 -12.84278 -12.73710 -12.15873 -12.11223 -12.02230 -11.73140 -11.58902 -11.45325 -11.29610 -10.74459 -10.66996 -9.55125 -9.28921 -9.18803 -8.23190 -6.36024 0.77198 0.82579 1.40037 1.40560 1.51144 2.03732 2.43050 3.07771 3.26365 3.83380 3.99423 4.06294 4.16371 4.27993 4.33295 4.45402 4.49448 4.62656 4.66190 4.85646 4.92034 4.94230 4.97983 5.01813 5.11742 5.14971 5.28849 5.36279 5.42153 5.47123 5.60394 5.81137 5.86503 5.91584 6.00468 6.24711 6.43759 6.61232 6.80752 7.30987 8.83549 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.014206 B = 0.011673 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.557153 B = 2398.078255 C = 3851.185995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.022 3.978 3 Si 0.964 3.036 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.232 3.768 10 H 0.001 0.999 11 C -0.038 4.038 12 C -0.111 4.111 13 C -0.129 4.129 14 C -0.143 4.143 15 C -0.131 4.131 16 C -0.142 4.142 17 N -0.338 5.338 18 C 0.028 3.972 19 C -0.111 4.111 20 C -0.147 4.147 21 C 0.054 3.946 22 O -0.297 6.297 23 H 0.266 0.734 24 H 0.111 0.889 25 H 0.143 0.857 26 H 0.148 0.852 27 H 0.132 0.868 28 H 0.088 0.912 29 H 0.010 0.990 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 -8.650 0.127 9.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.179 4.179 3 Si 0.789 3.211 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.125 3.875 10 H 0.019 0.981 11 C -0.039 4.039 12 C -0.129 4.129 13 C -0.147 4.147 14 C -0.161 4.161 15 C -0.149 4.149 16 C -0.161 4.161 17 N -0.108 5.108 18 C -0.101 4.101 19 C -0.148 4.148 20 C -0.185 4.185 21 C -0.024 4.024 22 O -0.300 6.300 23 H 0.075 0.925 24 H 0.129 0.871 25 H 0.161 0.839 26 H 0.165 0.835 27 H 0.150 0.850 28 H 0.106 0.894 29 H 0.028 0.972 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.123 0.877 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.941 -8.663 -0.144 9.975 hybrid contribution -0.889 1.354 0.705 1.767 sum 4.052 -7.309 0.561 8.376 Atomic orbital electron populations 1.70066 1.07515 1.27937 1.49677 1.25775 0.95661 1.02708 0.93736 0.85455 0.78882 0.78393 0.78408 1.20207 1.20688 1.18368 1.20923 0.93242 0.88831 1.51637 0.91771 1.18481 0.93705 0.87866 0.87418 0.98105 1.20177 0.93134 0.93519 0.97078 1.20907 0.97739 0.99083 0.95185 1.21378 0.98831 1.00473 0.93989 1.21268 0.92632 1.01491 1.00692 1.21243 0.99724 0.99840 0.94086 1.21018 0.97389 1.01652 0.96069 1.68808 1.40680 0.92522 1.08818 1.22560 0.98486 1.00040 0.88976 1.21615 0.99324 0.93902 0.99993 1.22117 1.01038 0.98245 0.97056 1.22708 0.98297 0.89658 0.91697 1.90836 1.51170 1.14306 1.73639 0.92519 0.87077 0.83924 0.83454 0.84964 0.89384 0.97199 0.89624 0.90688 0.89541 0.87949 0.92667 0.87713 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.86 12.77 21.45 0.27 -52.59 16 2 C 0.02 1.22 5.46 84.66 0.46 1.68 16 3 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.51 -27.63 6.99 25.60 0.18 -27.45 16 8 H 0.06 3.45 7.82 -2.91 -0.02 3.43 16 9 C 0.23 12.30 2.08 43.42 0.09 12.39 16 10 H 0.00 0.06 7.06 -2.39 -0.02 0.04 16 11 C -0.04 -1.88 4.31 -19.87 -0.09 -1.97 16 12 C -0.11 -4.83 9.27 22.27 0.21 -4.62 16 13 C -0.13 -4.61 10.05 22.27 0.22 -4.38 16 14 C -0.14 -4.84 10.05 22.27 0.22 -4.62 16 15 C -0.13 -5.07 10.05 22.27 0.22 -4.84 16 16 C -0.14 -6.82 9.67 22.27 0.22 -6.60 16 17 N -0.34 -15.59 4.55 -498.89 -2.27 -17.86 16 18 C 0.03 1.18 5.49 86.33 0.47 1.65 16 19 C -0.11 -3.35 6.11 30.69 0.19 -3.17 16 20 C -0.15 -3.99 6.13 30.69 0.19 -3.80 16 21 C 0.05 1.70 7.10 72.02 0.51 2.21 16 22 O -0.30 -13.02 10.59 -50.35 -0.53 -13.55 16 23 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 24 H 0.11 4.83 7.90 -2.91 -0.02 4.80 16 25 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 26 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 27 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 28 H 0.09 4.56 8.00 -2.91 -0.02 4.54 16 29 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.09 3.77 7.05 -2.39 -0.02 3.75 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.11 2.77 8.14 -2.38 -0.02 2.75 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -64.51 298.83 3.64 -60.88 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 1.04 Total: 21.64 kcal Atomic # 6 Polarization: -46.61 SS G_CDS: 3.10 Total: -43.51 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -2.00 Total: -70.45 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.53 Total: -13.55 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -64.51 3.64 -60.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309269382.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.360 kcal (2) G-P(sol) polarization free energy of solvation -64.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds