Wall clock time and date at job start Mon Mar 30 2020 06:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86801 * 119.99896 * 2 1 4 4 H 1.48502 * 109.47045 * 239.99806 * 3 2 1 5 5 H 1.48496 * 109.47298 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47492 * 120.00051 * 3 2 1 7 7 C 1.39886 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00146 * 162.90667 * 7 2 1 9 9 C 1.41214 * 119.99816 * 342.90751 * 7 2 1 10 10 C 1.40852 * 120.17916 * 334.66483 * 9 7 2 11 11 C 1.36427 * 119.80997 * 180.02562 * 10 9 7 12 12 C 1.39329 * 120.18112 * 0.02562 * 11 10 9 13 13 O 1.35683 * 119.81374 * 179.97438 * 12 11 10 14 14 C 1.39290 * 120.37213 * 0.02562 * 12 11 10 15 15 C 1.50697 * 119.90876 * 179.71639 * 14 12 11 16 16 H 1.08997 * 109.46806 * 325.00502 * 15 14 12 17 17 C 1.53035 * 109.45991 * 84.98480 * 15 14 12 18 18 C 1.53124 * 109.28151 * 179.19510 * 17 15 14 19 19 C 1.53118 * 109.15644 * 302.34238 * 18 17 15 20 20 C 1.53043 * 109.27993 * 57.65421 * 19 18 17 21 21 N 1.46845 * 109.46265 * 205.02001 * 15 14 12 22 22 C 1.36454 * 120.18070 * 359.97438 * 14 12 11 23 23 H 0.97001 * 119.99910 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.09227 * 0.02562 * 10 9 7 25 25 H 1.07994 * 119.90375 * 180.02562 * 11 10 9 26 26 H 0.96694 * 114.00194 * 270.02442 * 13 12 11 27 27 H 1.09004 * 109.50296 * 299.13277 * 17 15 14 28 28 H 1.09004 * 109.50710 * 59.21220 * 17 15 14 29 29 H 1.09000 * 109.51944 * 62.24490 * 18 17 15 30 30 H 1.08993 * 109.52289 * 182.37664 * 18 17 15 31 31 H 1.08997 * 109.50250 * 177.59338 * 19 18 17 32 32 H 1.09001 * 109.50420 * 297.67360 * 19 18 17 33 33 H 1.09008 * 109.45984 * 60.83348 * 20 19 18 34 34 H 1.08997 * 109.46454 * 180.80368 * 20 19 18 35 35 H 1.00896 * 111.00797 * 302.34288 * 21 15 14 36 36 H 1.08003 * 120.09147 * 179.97438 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0966 1.6964 -1.2125 5 1 1.2778 2.7465 -0.0006 6 1 3.0966 1.6965 1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0526 -1.2322 -0.2744 9 6 1.3490 -2.4072 0.3605 10 6 0.2190 -2.3675 1.2005 11 6 -0.4119 -3.5274 1.5439 12 6 0.0591 -4.7487 1.0666 13 8 -0.5738 -5.8978 1.4133 14 6 1.1765 -4.7969 0.2364 15 6 1.6807 -6.1241 -0.2687 16 1 1.5342 -6.8842 0.4987 17 6 0.9075 -6.5169 -1.5296 18 6 1.4367 -7.8560 -2.0506 19 6 2.9378 -7.7306 -2.3250 20 6 3.6523 -7.3026 -1.0411 21 7 3.1108 -6.0164 -0.5839 22 6 1.8189 -3.6459 -0.1165 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1469 -1.4216 1.5715 25 1 -1.2786 -3.4987 2.1875 26 1 -0.2341 -6.3054 2.2217 27 1 -0.1520 -6.6120 -1.2919 28 1 1.0419 -5.7502 -2.2926 29 1 1.2666 -8.6306 -1.3028 30 1 0.9177 -8.1190 -2.9722 31 1 3.3290 -8.6927 -2.6557 32 1 3.1047 -6.9837 -3.1013 33 1 3.4963 -8.0571 -0.2699 34 1 4.7195 -7.1985 -1.2366 35 1 3.2774 -5.2912 -1.2654 36 1 2.6855 -3.6850 -0.7600 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309275117.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:08 Heat of formation + Delta-G solvation = -39.869950 kcal Electronic energy + Delta-G solvation = -18006.401837 eV Core-core repulsion = 15261.274416 eV Total energy + Delta-G solvation = -2745.127421 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.22878 -37.50378 -35.67570 -33.39180 -31.85879 -31.17581 -29.26710 -27.97316 -24.93295 -23.41705 -22.70064 -20.88524 -20.28520 -19.65214 -17.21376 -17.12478 -15.40498 -15.16456 -14.66371 -14.55123 -14.26695 -13.98144 -13.57743 -13.31382 -12.84839 -12.58566 -12.02496 -11.85492 -11.67853 -11.48742 -11.20931 -11.07083 -11.00535 -10.80576 -10.60532 -10.46447 -10.27253 -10.06539 -9.68773 -9.19920 -8.91396 -7.98688 -7.47690 -7.16198 -6.78909 -4.34749 2.67647 2.98809 3.05534 3.07650 3.15573 3.91130 4.50816 4.66388 4.96269 5.09808 5.20320 5.41847 5.46645 5.64658 5.65917 5.77359 5.80808 5.94979 6.06100 6.20086 6.25723 6.26543 6.31852 6.47131 6.61003 6.90022 7.03146 7.08740 7.27824 7.47097 7.55865 7.64576 7.80377 7.98918 8.03381 8.21275 8.52228 8.72759 8.85595 9.04920 10.15826 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.027083 B = 0.006449 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.609500 B = 4340.896556 C = 5029.981530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.078 0.922 9 C 0.108 3.892 10 C -0.157 4.157 11 C -0.117 4.117 12 C -0.038 4.038 13 O -0.502 6.502 14 C -0.066 4.066 15 C 0.144 3.856 16 H 0.076 0.924 17 C -0.142 4.142 18 C -0.118 4.118 19 C -0.158 4.158 20 C 0.058 3.942 21 N -0.679 5.679 22 C -0.198 4.198 23 H 0.281 0.719 24 H 0.119 0.881 25 H 0.092 0.908 26 H 0.351 0.649 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.343 0.657 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.503 -8.583 -1.517 9.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.105 3.895 10 C -0.176 4.176 11 C -0.135 4.135 12 C -0.083 4.083 13 O -0.308 6.308 14 C -0.067 4.067 15 C 0.034 3.966 16 H 0.094 0.906 17 C -0.182 4.182 18 C -0.155 4.155 19 C -0.198 4.198 20 C -0.072 4.072 21 N -0.309 5.309 22 C -0.218 4.218 23 H 0.092 0.908 24 H 0.137 0.863 25 H 0.111 0.889 26 H 0.202 0.798 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.163 0.837 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.176 -8.378 -1.402 9.069 hybrid contribution 0.100 0.654 -0.551 0.861 sum 3.275 -7.724 -1.953 8.614 Atomic orbital electron populations 1.69841 1.07578 1.29382 1.35022 1.25925 0.94733 1.01361 0.92244 0.86359 0.80127 0.80181 0.80017 1.19001 1.20358 1.18771 1.19522 0.97890 0.91164 1.40212 0.90340 1.17639 0.91188 0.92083 0.88541 1.20982 0.99073 0.96636 1.00931 1.20694 0.99310 0.92826 1.00717 1.17779 0.98423 0.84492 1.07643 1.84839 1.61263 1.38752 1.45948 1.19174 0.94753 0.93540 0.99266 1.20131 0.85534 0.95683 0.95253 0.90631 1.22188 1.01238 0.96280 0.98449 1.21571 0.95343 0.98053 1.00579 1.22288 0.96580 1.01443 0.99472 1.21997 0.98249 0.92322 0.94678 1.60763 1.15685 1.06091 1.48393 1.20378 1.02946 0.91880 1.06633 0.90766 0.86272 0.88947 0.79831 0.91004 0.92169 0.92222 0.92511 0.92114 0.92168 0.91411 0.91200 0.83716 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.37 10.96 55.54 0.61 -19.77 16 2 C 0.08 1.87 5.15 -17.34 -0.09 1.78 16 3 Si 0.91 18.46 29.59 -169.99 -5.03 13.43 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -11.96 9.04 -37.84 -0.34 -12.31 16 8 H 0.08 1.96 7.90 -52.48 -0.41 1.55 16 9 C 0.11 2.84 5.57 -106.80 -0.59 2.25 16 10 C -0.16 -4.07 8.64 -39.25 -0.34 -4.41 16 11 C -0.12 -2.80 9.92 -39.83 -0.40 -3.20 16 12 C -0.04 -0.87 6.70 -38.78 -0.26 -1.13 16 13 O -0.50 -10.01 12.61 -18.75 -0.24 -10.25 16 14 C -0.07 -1.47 5.04 -104.88 -0.53 -2.00 16 15 C 0.14 2.61 2.37 -68.88 -0.16 2.44 16 16 H 0.08 1.37 7.68 -51.93 -0.40 0.97 16 17 C -0.14 -2.39 5.34 -26.65 -0.14 -2.53 16 18 C -0.12 -1.59 6.00 -26.61 -0.16 -1.74 16 19 C -0.16 -1.94 6.08 -26.65 -0.16 -2.10 16 20 C 0.06 0.76 6.56 -3.83 -0.03 0.74 16 21 N -0.68 -11.27 6.13 -107.98 -0.66 -11.93 16 22 C -0.20 -4.75 8.96 -39.25 -0.35 -5.10 16 23 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 24 H 0.12 3.18 6.19 -52.49 -0.32 2.86 16 25 H 0.09 2.05 8.06 -52.49 -0.42 1.62 16 26 H 0.35 5.48 9.06 45.56 0.41 5.90 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.34 5.79 6.88 -39.29 -0.27 5.52 16 36 H 0.10 2.20 6.19 -52.48 -0.32 1.87 16 LS Contribution 291.36 15.07 4.39 4.39 Total: -1.00 -27.54 291.36 -8.74 -36.28 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -4.26 Total: 15.16 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -3.55 Total: -27.32 kcal Atomic # 7 Polarization: -31.65 SS G_CDS: -0.05 Total: -31.70 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -0.24 Total: -10.25 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.54 -8.74 -36.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309275117.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.585 kcal (2) G-P(sol) polarization free energy of solvation -27.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds