Wall clock time and date at job start Mon Mar 30 2020 06:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86801 * 119.99896 * 2 1 4 4 H 1.48502 * 109.47045 * 239.99806 * 3 2 1 5 5 H 1.48496 * 109.47298 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47492 * 120.00051 * 3 2 1 7 7 C 1.39886 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00146 * 162.90667 * 7 2 1 9 9 C 1.41214 * 119.99816 * 342.90751 * 7 2 1 10 10 C 1.40852 * 120.17916 * 334.66483 * 9 7 2 11 11 C 1.36427 * 119.80997 * 180.02562 * 10 9 7 12 12 C 1.39329 * 120.18112 * 0.02562 * 11 10 9 13 13 O 1.35683 * 119.81374 * 179.97438 * 12 11 10 14 14 C 1.39290 * 120.37213 * 0.02562 * 12 11 10 15 15 C 1.50697 * 119.90876 * 179.71639 * 14 12 11 16 16 H 1.08997 * 109.46806 * 325.00502 * 15 14 12 17 17 C 1.53035 * 109.45991 * 84.98480 * 15 14 12 18 18 C 1.53124 * 109.28151 * 179.19510 * 17 15 14 19 19 C 1.53118 * 109.15644 * 302.34238 * 18 17 15 20 20 C 1.53043 * 109.27993 * 57.65421 * 19 18 17 21 21 N 1.46845 * 109.46265 * 205.02001 * 15 14 12 22 22 C 1.36454 * 120.18070 * 359.97438 * 14 12 11 23 23 H 0.97001 * 119.99910 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.09227 * 0.02562 * 10 9 7 25 25 H 1.07994 * 119.90375 * 180.02562 * 11 10 9 26 26 H 0.96694 * 114.00194 * 270.02442 * 13 12 11 27 27 H 1.09004 * 109.50296 * 299.13277 * 17 15 14 28 28 H 1.09004 * 109.50710 * 59.21220 * 17 15 14 29 29 H 1.09000 * 109.51944 * 62.24490 * 18 17 15 30 30 H 1.08993 * 109.52289 * 182.37664 * 18 17 15 31 31 H 1.08997 * 109.50250 * 177.59338 * 19 18 17 32 32 H 1.09001 * 109.50420 * 297.67360 * 19 18 17 33 33 H 1.09008 * 109.45984 * 60.83348 * 20 19 18 34 34 H 1.08997 * 109.46454 * 180.80368 * 20 19 18 35 35 H 1.00896 * 111.00797 * 302.34288 * 21 15 14 36 36 H 1.08003 * 120.09147 * 179.97438 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0966 1.6964 -1.2125 5 1 1.2778 2.7465 -0.0006 6 1 3.0966 1.6965 1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0526 -1.2322 -0.2744 9 6 1.3490 -2.4072 0.3605 10 6 0.2190 -2.3675 1.2005 11 6 -0.4119 -3.5274 1.5439 12 6 0.0591 -4.7487 1.0666 13 8 -0.5738 -5.8978 1.4133 14 6 1.1765 -4.7969 0.2364 15 6 1.6807 -6.1241 -0.2687 16 1 1.5342 -6.8842 0.4987 17 6 0.9075 -6.5169 -1.5296 18 6 1.4367 -7.8560 -2.0506 19 6 2.9378 -7.7306 -2.3250 20 6 3.6523 -7.3026 -1.0411 21 7 3.1108 -6.0164 -0.5839 22 6 1.8189 -3.6459 -0.1165 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1469 -1.4216 1.5715 25 1 -1.2786 -3.4987 2.1875 26 1 -0.2341 -6.3054 2.2217 27 1 -0.1520 -6.6120 -1.2919 28 1 1.0419 -5.7502 -2.2926 29 1 1.2666 -8.6306 -1.3028 30 1 0.9177 -8.1190 -2.9722 31 1 3.3290 -8.6927 -2.6557 32 1 3.1047 -6.9837 -3.1013 33 1 3.4963 -8.0571 -0.2699 34 1 4.7195 -7.1985 -1.2366 35 1 3.2774 -5.2912 -1.2654 36 1 2.6855 -3.6850 -0.7600 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309275117.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:08 Heat of formation + Delta-G solvation = -57.707458 kcal Electronic energy + Delta-G solvation = -18007.175330 eV Core-core repulsion = 15261.274416 eV Total energy + Delta-G solvation = -2745.900914 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.77570 -38.99260 -37.45096 -35.17643 -33.29696 -32.44969 -31.14508 -29.55347 -26.78129 -24.83197 -23.99846 -22.61368 -21.82527 -21.07122 -19.02125 -18.83632 -17.18024 -16.60797 -16.21550 -15.94815 -15.74886 -15.35346 -15.05323 -14.82265 -14.35760 -14.12772 -13.57227 -13.38589 -13.31017 -13.04645 -12.84263 -12.62463 -12.37852 -12.19768 -12.17107 -11.88089 -11.73565 -11.44937 -11.41844 -11.00444 -10.68108 -9.43412 -9.24918 -8.95863 -8.64198 -6.30458 0.86429 1.10191 1.39028 1.49374 1.52852 2.21109 2.67267 3.37914 3.60364 3.81408 3.93935 3.96403 4.10478 4.30244 4.34770 4.44850 4.45089 4.62429 4.81099 4.96586 5.00364 5.05525 5.12179 5.13245 5.15039 5.19568 5.27609 5.36370 5.43822 5.68580 5.84294 6.06963 6.08323 6.16924 6.40448 6.49709 6.62671 6.90776 6.93565 7.31764 8.32976 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.027083 B = 0.006449 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.609500 B = 4340.896556 C = 5029.981530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.034 3.966 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.494 4.494 8 H 0.079 0.921 9 C 0.076 3.924 10 C -0.181 4.181 11 C -0.127 4.127 12 C -0.033 4.033 13 O -0.501 6.501 14 C -0.069 4.069 15 C 0.151 3.849 16 H 0.082 0.918 17 C -0.138 4.138 18 C -0.112 4.112 19 C -0.152 4.152 20 C 0.056 3.944 21 N -0.691 5.691 22 C -0.206 4.206 23 H 0.288 0.712 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.377 0.623 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.339 0.661 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.526 -10.043 -1.952 11.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.523 4.523 8 H 0.097 0.903 9 C 0.074 3.926 10 C -0.200 4.200 11 C -0.146 4.146 12 C -0.078 4.078 13 O -0.310 6.310 14 C -0.070 4.070 15 C 0.041 3.959 16 H 0.100 0.900 17 C -0.177 4.177 18 C -0.150 4.150 19 C -0.192 4.192 20 C -0.073 4.073 21 N -0.321 5.321 22 C -0.226 4.226 23 H 0.099 0.901 24 H 0.120 0.880 25 H 0.124 0.876 26 H 0.231 0.769 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.158 0.842 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.202 -9.876 -1.826 10.887 hybrid contribution -0.272 0.935 -0.380 1.045 sum 3.930 -8.941 -2.207 10.013 Atomic orbital electron populations 1.69904 1.09081 1.30626 1.35720 1.26782 0.95454 1.04606 0.91183 0.85246 0.78746 0.75564 0.80128 1.18247 1.19350 1.18449 1.19775 0.98173 0.92291 1.42040 0.90308 1.18008 0.91892 0.93355 0.89327 1.20913 1.00127 0.96695 1.02288 1.20908 0.99722 0.92953 1.01033 1.17880 0.98040 0.84935 1.06958 1.84748 1.61201 1.37539 1.47495 1.19589 0.94117 0.95086 0.98186 1.20033 0.86768 0.93227 0.95839 0.90037 1.22105 1.00172 0.98010 0.97433 1.21546 0.96275 0.95888 1.01262 1.22236 0.95424 1.02749 0.98743 1.22123 0.99129 0.90674 0.95370 1.60738 1.14485 1.07855 1.48995 1.20547 1.03446 0.91848 1.06733 0.90148 0.87955 0.87598 0.76910 0.92719 0.93790 0.91227 0.91265 0.89398 0.92568 0.90703 0.89523 0.84219 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.84 10.96 21.82 0.24 -43.60 16 2 C 0.03 1.75 5.15 85.23 0.44 2.18 16 3 Si 0.98 38.23 29.59 68.60 2.03 40.26 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 5 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 7 C -0.49 -26.61 9.04 23.40 0.21 -26.40 16 8 H 0.08 4.06 7.90 -2.91 -0.02 4.04 16 9 C 0.08 4.17 5.57 -21.28 -0.12 4.05 16 10 C -0.18 -9.76 8.64 22.49 0.19 -9.56 16 11 C -0.13 -6.21 9.92 22.11 0.22 -5.99 16 12 C -0.03 -1.49 6.70 22.79 0.15 -1.33 16 13 O -0.50 -19.10 12.61 -90.01 -1.13 -20.24 16 14 C -0.07 -3.03 5.04 -20.03 -0.10 -3.13 16 15 C 0.15 5.28 2.37 44.19 0.10 5.38 16 16 H 0.08 2.76 7.68 -2.39 -0.02 2.74 16 17 C -0.14 -4.45 5.34 30.65 0.16 -4.29 16 18 C -0.11 -2.69 6.00 30.68 0.18 -2.51 16 19 C -0.15 -3.21 6.08 30.65 0.19 -3.02 16 20 C 0.06 1.31 6.56 86.33 0.57 1.88 16 21 N -0.69 -21.80 6.13 -495.55 -3.04 -24.84 16 22 C -0.21 -10.04 8.96 22.48 0.20 -9.84 16 23 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 24 H 0.10 5.76 6.19 -2.91 -0.02 5.74 16 25 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 26 H 0.38 10.81 9.06 -74.06 -0.67 10.14 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.34 11.14 6.88 -89.70 -0.62 10.52 16 36 H 0.11 4.85 6.19 -2.91 -0.02 4.83 16 Total: -1.00 -60.43 291.36 0.31 -60.12 By element: Atomic # 1 Polarization: 41.07 SS G_CDS: -0.19 Total: 40.87 kcal Atomic # 6 Polarization: -54.99 SS G_CDS: 2.40 Total: -52.58 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: -2.80 Total: -68.43 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -1.13 Total: -20.24 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.26 kcal Total: -60.43 0.31 -60.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309275117.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.415 kcal (2) G-P(sol) polarization free energy of solvation -60.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds