Wall clock time and date at job start Mon Mar 30 2020 06:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86799 * 119.99966 * 2 1 4 4 H 1.48498 * 109.47427 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46996 * 300.00137 * 3 2 1 6 6 H 1.48500 * 109.47099 * 59.99768 * 3 2 1 7 7 C 1.39886 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99584 * 162.65469 * 7 2 1 9 9 C 1.41217 * 120.00340 * 342.66302 * 7 2 1 10 10 C 1.40851 * 120.17572 * 334.87347 * 9 7 2 11 11 C 1.36417 * 119.81434 * 179.97438 * 10 9 7 12 12 C 1.39336 * 120.18006 * 359.97438 * 11 10 9 13 13 O 1.35678 * 119.81603 * 180.02562 * 12 11 10 14 14 C 1.39288 * 120.36617 * 0.04056 * 12 11 10 15 15 C 1.50706 * 119.91026 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.46187 * 39.94956 * 15 14 12 17 17 C 1.53037 * 109.45810 * 279.97824 * 15 14 12 18 18 C 1.53121 * 109.27740 * 180.80294 * 17 15 14 19 19 C 1.53120 * 109.16055 * 57.65382 * 18 17 15 20 20 C 1.53043 * 109.27654 * 302.34550 * 19 18 17 21 21 N 1.46840 * 109.46332 * 159.92482 * 15 14 12 22 22 C 1.36460 * 120.18747 * 359.95595 * 14 12 11 23 23 H 0.97000 * 119.99806 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.09684 * 359.70390 * 10 9 7 25 25 H 1.07998 * 119.91552 * 180.02562 * 11 10 9 26 26 H 0.96701 * 114.00270 * 269.99439 * 13 12 11 27 27 H 1.09007 * 109.50451 * 300.74127 * 17 15 14 28 28 H 1.08996 * 109.51032 * 60.82101 * 17 15 14 29 29 H 1.09005 * 109.52334 * 177.55633 * 18 17 15 30 30 H 1.09003 * 109.52280 * 297.68488 * 18 17 15 31 31 H 1.09002 * 109.50438 * 62.28562 * 19 18 17 32 32 H 1.09005 * 109.50552 * 182.36734 * 19 18 17 33 33 H 1.09001 * 109.45977 * 179.19404 * 20 19 18 34 34 H 1.08994 * 109.46358 * 299.17400 * 20 19 18 35 35 H 1.00898 * 111.00085 * 305.85143 * 21 15 14 36 36 H 1.07993 * 120.09329 * 180.02562 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3465 -0.0006 5 1 1.8841 2.3965 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0514 -1.2328 -0.2783 9 6 1.3504 -2.4065 0.3655 10 6 0.2209 -2.3647 1.2060 11 6 -0.4093 -3.5236 1.5535 12 6 0.0612 -4.7462 1.0789 13 8 -0.5716 -5.8943 1.4287 14 6 1.1776 -4.7964 0.2475 15 6 1.6780 -6.1245 -0.2594 16 1 0.8294 -6.7568 -0.5202 17 6 2.5063 -6.8072 0.8314 18 6 3.0292 -8.1467 0.3051 19 6 3.8552 -7.9015 -0.9607 20 6 2.9877 -7.1870 -1.9995 21 7 2.5129 -5.9113 -1.4484 22 6 1.8195 -3.6463 -0.1095 23 1 -0.4850 0.8401 0.0004 24 1 -0.1426 -1.4181 1.5779 25 1 -1.2757 -3.4933 2.1975 26 1 -0.2312 -6.3003 2.2376 27 1 3.3477 -6.1693 1.1024 28 1 1.8824 -6.9788 1.7085 29 1 3.6556 -8.6166 1.0634 30 1 2.1882 -8.7997 0.0716 31 1 4.7177 -7.2808 -0.7178 32 1 4.1953 -8.8554 -1.3639 33 1 3.5771 -6.9981 -2.8967 34 1 2.1327 -7.8141 -2.2519 35 1 2.0176 -5.3777 -2.1470 36 1 2.6847 -3.6869 -0.7545 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309275120.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:11 Heat of formation + Delta-G solvation = -57.128855 kcal Electronic energy + Delta-G solvation = -17995.488666 eV Core-core repulsion = 15249.612842 eV Total energy + Delta-G solvation = -2745.875824 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.69744 -38.83188 -37.46698 -35.17767 -33.37216 -32.60578 -31.14453 -29.54912 -26.76461 -24.83066 -24.03266 -22.62297 -21.88085 -20.43298 -19.05902 -18.78853 -17.32028 -17.08816 -16.20764 -16.02382 -15.61568 -15.04228 -14.87716 -14.72009 -14.35422 -14.05751 -13.97068 -13.52588 -13.31171 -13.19915 -12.88212 -12.62616 -12.40393 -12.08513 -11.97058 -11.74310 -11.64779 -11.42660 -11.19103 -11.00669 -10.66051 -9.41845 -9.28513 -9.03930 -8.64491 -6.29813 0.84198 1.10381 1.39282 1.47664 1.54739 2.21572 2.66575 3.28117 3.60389 3.86456 3.91701 4.03240 4.12632 4.36205 4.40204 4.46027 4.49563 4.69099 4.84807 4.90970 5.03194 5.09544 5.11665 5.17731 5.22273 5.25559 5.31909 5.40502 5.51615 5.69057 5.83810 6.04844 6.10270 6.16522 6.43440 6.49180 6.63937 6.91000 6.94288 7.30205 8.33089 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.027867 B = 0.006392 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.531297 B = 4379.162635 C = 5088.482277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.491 4.491 8 H 0.077 0.923 9 C 0.073 3.927 10 C -0.180 4.180 11 C -0.128 4.128 12 C -0.034 4.034 13 O -0.502 6.502 14 C -0.077 4.077 15 C 0.149 3.851 16 H 0.033 0.967 17 C -0.100 4.100 18 C -0.115 4.115 19 C -0.114 4.114 20 C 0.055 3.945 21 N -0.692 5.692 22 C -0.198 4.198 23 H 0.288 0.712 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.376 0.624 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.028 0.972 35 H 0.340 0.660 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.120 -10.431 -0.021 11.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.520 4.520 8 H 0.095 0.905 9 C 0.071 3.929 10 C -0.199 4.199 11 C -0.147 4.147 12 C -0.079 4.079 13 O -0.311 6.311 14 C -0.078 4.078 15 C 0.039 3.961 16 H 0.050 0.950 17 C -0.138 4.138 18 C -0.153 4.153 19 C -0.152 4.152 20 C -0.074 4.074 21 N -0.324 5.324 22 C -0.217 4.217 23 H 0.098 0.902 24 H 0.120 0.880 25 H 0.124 0.876 26 H 0.230 0.770 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.046 0.954 35 H 0.158 0.842 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.159 -10.078 -0.198 11.323 hybrid contribution -0.697 0.703 0.057 0.991 sum 4.462 -9.375 -0.141 10.384 Atomic orbital electron populations 1.69917 1.09066 1.30501 1.35833 1.26777 0.95447 1.04589 0.91200 0.85158 0.79472 0.76173 0.78904 1.18078 1.19098 1.18922 1.19804 0.98178 0.92337 1.41677 0.90531 1.18064 0.91916 0.93472 0.89424 1.20903 1.00132 0.96658 1.02224 1.20895 0.99759 0.92903 1.01110 1.17913 0.97776 0.84891 1.07324 1.84730 1.61260 1.37739 1.47371 1.19640 0.94151 0.95178 0.98875 1.20020 0.92808 0.91822 0.91456 0.94969 1.21494 0.98892 0.96616 0.96768 1.21580 0.99860 0.95777 0.98042 1.21599 0.98102 1.00416 0.95098 1.22032 0.98054 0.89361 0.97918 1.60315 1.43653 1.19584 1.08843 1.20688 1.03638 0.91473 1.05928 0.90160 0.88000 0.87612 0.76994 0.92872 0.91600 0.90268 0.91885 0.92062 0.89454 0.89773 0.95361 0.84205 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.87 10.97 21.82 0.24 -43.63 16 2 C 0.03 1.75 5.14 85.23 0.44 2.19 16 3 Si 0.98 38.44 29.59 68.60 2.03 40.47 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 7 C -0.49 -26.65 9.04 23.40 0.21 -26.44 16 8 H 0.08 4.03 7.90 -2.91 -0.02 4.01 16 9 C 0.07 4.02 5.57 -21.28 -0.12 3.90 16 10 C -0.18 -9.69 8.63 22.48 0.19 -9.49 16 11 C -0.13 -6.23 9.92 22.11 0.22 -6.01 16 12 C -0.03 -1.53 6.70 22.79 0.15 -1.37 16 13 O -0.50 -19.24 12.63 -89.95 -1.14 -20.38 16 14 C -0.08 -3.42 5.00 -20.03 -0.10 -3.52 16 15 C 0.15 5.27 2.30 44.19 0.10 5.37 16 16 H 0.03 1.20 7.84 -2.39 -0.02 1.18 16 17 C -0.10 -2.99 5.35 30.65 0.16 -2.82 16 18 C -0.12 -2.62 6.00 30.67 0.18 -2.44 16 19 C -0.11 -2.50 6.09 30.65 0.19 -2.32 16 20 C 0.06 1.38 6.55 86.33 0.57 1.94 16 21 N -0.69 -22.69 5.23 -495.56 -2.59 -25.28 16 22 C -0.20 -9.75 8.84 22.48 0.20 -9.55 16 23 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 24 H 0.10 5.73 6.19 -2.91 -0.02 5.71 16 25 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 26 H 0.38 10.81 8.62 -74.06 -0.64 10.17 16 27 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.07 1.86 7.63 -2.39 -0.02 1.84 16 29 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.34 11.64 8.48 -89.70 -0.76 10.88 16 36 H 0.11 5.40 7.06 -2.91 -0.02 5.38 16 Total: -1.00 -60.85 291.96 0.63 -60.22 By element: Atomic # 1 Polarization: 39.46 SS G_CDS: -0.31 Total: 39.15 kcal Atomic # 6 Polarization: -52.95 SS G_CDS: 2.40 Total: -50.56 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: -2.35 Total: -68.91 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -1.14 Total: -20.38 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -60.85 0.63 -60.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309275120.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.093 kcal (2) G-P(sol) polarization free energy of solvation -60.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds