Wall clock time and date at job start Mon Mar 30 2020 06:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00168 * 2 1 4 4 H 1.48503 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47236 * 299.99822 * 3 2 1 6 6 H 1.48497 * 109.47261 * 59.99785 * 3 2 1 7 7 C 1.37875 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00130 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47112 * 179.97438 * 9 7 2 11 11 O 1.42901 * 109.47099 * 179.97438 * 10 9 7 12 12 C 1.35900 * 116.99990 * 180.02562 * 11 10 9 13 13 C 1.38643 * 119.95211 * 359.97438 * 12 11 10 14 14 C 1.38118 * 119.87170 * 179.97438 * 13 12 11 15 15 C 1.38167 * 119.99885 * 0.02562 * 14 13 12 16 16 C 1.38500 * 120.33483 * 0.02562 * 15 14 13 17 17 C 1.38165 * 119.87966 * 359.97438 * 16 15 14 18 18 C 1.51361 * 109.77923 * 179.97438 * 17 16 15 19 19 H 1.09003 * 110.30479 * 258.26322 * 18 17 16 20 20 N 1.46894 * 110.30718 * 136.20527 * 18 17 16 21 21 C 1.54607 * 105.18197 * 17.19636 * 18 17 16 22 22 C 1.51376 * 130.36526 * 179.97438 * 16 15 14 23 23 H 0.97004 * 119.99684 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47075 * 60.00064 * 9 7 2 25 25 H 1.09004 * 109.46965 * 299.99965 * 9 7 2 26 26 H 1.09004 * 109.46724 * 60.00244 * 10 9 7 27 27 H 1.08990 * 109.47159 * 299.99907 * 10 9 7 28 28 H 1.08002 * 120.06486 * 359.95867 * 13 12 11 29 29 H 1.07999 * 119.99695 * 179.97438 * 14 13 12 30 30 H 1.08002 * 119.83537 * 179.97438 * 15 14 13 31 31 H 1.00900 * 111.00432 * 179.97438 * 20 18 17 32 32 H 1.00904 * 111.00152 * 303.95270 * 20 18 17 33 33 H 1.08997 * 110.90279 * 215.46131 * 21 18 17 34 34 H 1.08993 * 110.85430 * 91.82340 * 21 18 17 35 35 H 1.09002 * 110.30354 * 281.75717 * 22 16 15 36 36 H 1.08997 * 110.30243 * 43.81231 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5307 -4.8996 0.0011 12 6 2.2708 -6.0394 0.0018 13 6 3.6553 -5.9657 0.0012 14 6 4.4059 -7.1251 0.0024 15 6 3.7769 -8.3553 0.0036 16 6 2.3941 -8.4339 0.0030 17 6 1.6389 -7.2769 0.0018 18 6 0.1662 -7.6264 0.0008 19 1 -0.2490 -7.5119 -1.0005 20 7 -0.5602 -6.7762 0.9532 21 6 0.1011 -9.1066 0.4426 22 6 1.4807 -9.6410 0.0035 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6239 -2.5566 0.8903 26 1 2.8718 -3.6043 0.8906 27 1 2.8718 -3.6044 -0.8894 28 1 4.1459 -5.0035 -0.0003 29 1 5.4845 -7.0701 0.0016 30 1 4.3664 -9.2602 0.0040 31 1 -1.5440 -7.0003 0.9607 32 1 -0.1651 -6.8505 1.8787 33 1 -0.7011 -9.6321 -0.0754 34 1 -0.0178 -9.1841 1.5232 35 1 1.4191 -10.0690 -0.9971 36 1 1.8405 -10.3872 0.7119 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309520029.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:19 Heat of formation + Delta-G solvation = -26.222730 kcal Electronic energy + Delta-G solvation = -17476.079141 eV Core-core repulsion = 14731.543507 eV Total energy + Delta-G solvation = -2744.535634 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.30862 -37.92348 -35.74238 -33.33393 -32.26687 -30.54494 -29.01255 -28.74647 -25.41987 -24.92743 -22.32714 -21.63968 -20.42413 -19.89845 -17.41289 -16.48190 -15.97943 -15.72677 -15.22345 -14.94814 -14.63834 -14.50335 -13.82845 -13.50874 -12.98007 -12.65158 -12.31253 -12.25388 -12.20719 -11.85638 -11.47267 -11.28065 -11.09308 -10.89572 -10.75029 -10.66189 -10.37621 -9.75429 -9.57004 -9.20263 -8.48630 -8.38844 -8.38244 -7.69414 -6.04287 -4.08453 1.47926 1.74222 3.29819 3.36795 3.40546 3.94438 3.98218 4.38020 4.45832 4.63849 4.78282 4.97439 5.15394 5.18949 5.28418 5.31977 5.45531 5.61098 5.66063 5.71899 5.79659 5.96306 6.06223 6.13390 6.16936 6.22244 6.59603 6.61940 6.69859 6.81635 7.06529 7.35590 7.61171 7.67859 7.75701 7.90050 8.20420 8.32586 8.97797 9.55366 11.07228 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.035004 B = 0.004838 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.725047 B = 5786.063548 C = 6511.283081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.028 3.972 10 C 0.062 3.938 11 O -0.290 6.290 12 C 0.178 3.822 13 C -0.222 4.222 14 C -0.074 4.074 15 C -0.166 4.166 16 C -0.062 4.062 17 C -0.143 4.143 18 C 0.146 3.854 19 H 0.090 0.910 20 N -0.826 5.826 21 C -0.158 4.158 22 C -0.076 4.076 23 H 0.262 0.738 24 H 0.027 0.973 25 H 0.029 0.971 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.132 0.868 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.338 0.662 32 H 0.340 0.660 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.411 -18.829 0.855 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.012 4.012 11 O -0.202 6.202 12 C 0.130 3.870 13 C -0.241 4.241 14 C -0.093 4.093 15 C -0.184 4.184 16 C -0.063 4.063 17 C -0.144 4.144 18 C 0.034 3.966 19 H 0.108 0.892 20 N -0.354 5.354 21 C -0.197 4.197 22 C -0.114 4.114 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.149 0.851 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.253 -18.024 0.400 18.319 hybrid contribution 0.606 0.163 0.459 0.777 sum 3.858 -17.861 0.859 18.293 Atomic orbital electron populations 1.69996 1.06060 1.26700 1.49938 1.24979 0.94874 0.99282 0.95038 0.86464 0.79998 0.83441 0.77669 1.19690 1.20885 1.20885 1.21041 0.93027 0.90370 1.51885 0.92453 1.19075 0.94070 0.88808 0.98912 1.23311 0.97089 0.81610 0.99229 1.86360 1.35379 1.12454 1.85986 1.18781 0.89511 0.86827 0.91921 1.21317 0.92962 0.99885 1.09951 1.20788 0.99317 0.91751 0.97408 1.20331 0.92887 0.97470 1.07728 1.20301 0.93320 0.94619 0.98059 1.19650 0.95403 0.90568 1.08794 1.20768 0.90219 0.88289 0.97294 0.89230 1.58567 1.06179 1.58962 1.11709 1.23262 0.97129 0.98042 1.01299 1.20947 0.93287 0.95296 1.01863 0.92854 0.95492 0.95288 0.93465 0.93529 0.85054 0.86073 0.86742 0.84942 0.84711 0.90688 0.91158 0.90198 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.77 5.34 -27.88 -0.15 0.62 16 10 C 0.06 1.38 4.68 37.16 0.17 1.56 16 11 O -0.29 -6.22 9.69 -19.43 -0.19 -6.40 16 12 C 0.18 3.26 6.68 -39.17 -0.26 3.00 16 13 C -0.22 -3.65 9.03 -39.48 -0.36 -4.01 16 14 C -0.07 -1.02 10.04 -39.65 -0.40 -1.42 16 15 C -0.17 -2.14 10.04 -39.51 -0.40 -2.54 16 16 C -0.06 -0.84 6.14 -104.22 -0.64 -1.48 16 17 C -0.14 -2.27 5.72 -104.06 -0.60 -2.86 16 18 C 0.15 1.98 3.95 -67.70 -0.27 1.71 16 19 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 20 N -0.83 -11.67 8.88 -4.66 -0.04 -11.71 16 21 C -0.16 -1.57 6.78 -25.19 -0.17 -1.74 16 22 C -0.08 -0.78 6.76 -26.86 -0.18 -0.96 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 1.01 7.66 -51.93 -0.40 0.61 16 27 H 0.05 0.99 7.66 -51.93 -0.40 0.60 16 28 H 0.13 2.12 6.29 -52.49 -0.33 1.79 16 29 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.34 3.90 9.08 -39.29 -0.36 3.54 16 32 H 0.34 4.61 8.94 -39.29 -0.35 4.26 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 301.12 15.07 4.54 4.54 Total: -1.00 -31.47 301.12 -8.80 -40.28 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.17 Total: 4.62 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -3.65 Total: -21.74 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.70 Total: -37.85 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.19 Total: -6.40 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.47 -8.80 -40.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309520029.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.056 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds