Wall clock time and date at job start Mon Mar 30 2020 06:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00168 * 2 1 4 4 H 1.48503 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47236 * 299.99822 * 3 2 1 6 6 H 1.48497 * 109.47261 * 59.99785 * 3 2 1 7 7 C 1.37875 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00130 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47112 * 179.97438 * 9 7 2 11 11 O 1.42901 * 109.47099 * 179.97438 * 10 9 7 12 12 C 1.35900 * 116.99990 * 180.02562 * 11 10 9 13 13 C 1.38643 * 119.95211 * 359.97438 * 12 11 10 14 14 C 1.38118 * 119.87170 * 179.97438 * 13 12 11 15 15 C 1.38167 * 119.99885 * 0.02562 * 14 13 12 16 16 C 1.38500 * 120.33483 * 0.02562 * 15 14 13 17 17 C 1.38165 * 119.87966 * 359.97438 * 16 15 14 18 18 C 1.51361 * 109.77923 * 179.97438 * 17 16 15 19 19 H 1.09003 * 110.30479 * 258.26322 * 18 17 16 20 20 N 1.46894 * 110.30718 * 136.20527 * 18 17 16 21 21 C 1.54607 * 105.18197 * 17.19636 * 18 17 16 22 22 C 1.51376 * 130.36526 * 179.97438 * 16 15 14 23 23 H 0.97004 * 119.99684 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47075 * 60.00064 * 9 7 2 25 25 H 1.09004 * 109.46965 * 299.99965 * 9 7 2 26 26 H 1.09004 * 109.46724 * 60.00244 * 10 9 7 27 27 H 1.08990 * 109.47159 * 299.99907 * 10 9 7 28 28 H 1.08002 * 120.06486 * 359.95867 * 13 12 11 29 29 H 1.07999 * 119.99695 * 179.97438 * 14 13 12 30 30 H 1.08002 * 119.83537 * 179.97438 * 15 14 13 31 31 H 1.00900 * 111.00432 * 179.97438 * 20 18 17 32 32 H 1.00904 * 111.00152 * 303.95270 * 20 18 17 33 33 H 1.08997 * 110.90279 * 215.46131 * 21 18 17 34 34 H 1.08993 * 110.85430 * 91.82340 * 21 18 17 35 35 H 1.09002 * 110.30354 * 281.75717 * 22 16 15 36 36 H 1.08997 * 110.30243 * 43.81231 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5307 -4.8996 0.0011 12 6 2.2708 -6.0394 0.0018 13 6 3.6553 -5.9657 0.0012 14 6 4.4059 -7.1251 0.0024 15 6 3.7769 -8.3553 0.0036 16 6 2.3941 -8.4339 0.0030 17 6 1.6389 -7.2769 0.0018 18 6 0.1662 -7.6264 0.0008 19 1 -0.2490 -7.5119 -1.0005 20 7 -0.5602 -6.7762 0.9532 21 6 0.1011 -9.1066 0.4426 22 6 1.4807 -9.6410 0.0035 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6239 -2.5566 0.8903 26 1 2.8718 -3.6043 0.8906 27 1 2.8718 -3.6044 -0.8894 28 1 4.1459 -5.0035 -0.0003 29 1 5.4845 -7.0701 0.0016 30 1 4.3664 -9.2602 0.0040 31 1 -1.5440 -7.0003 0.9607 32 1 -0.1651 -6.8505 1.8787 33 1 -0.7011 -9.6321 -0.0754 34 1 -0.0178 -9.1841 1.5232 35 1 1.4191 -10.0690 -0.9971 36 1 1.8405 -10.3872 0.7119 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309520029.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:18 Heat of formation + Delta-G solvation = -46.751179 kcal Electronic energy + Delta-G solvation = -17476.969321 eV Core-core repulsion = 14731.543507 eV Total energy + Delta-G solvation = -2745.425814 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.47490 -39.31089 -36.85868 -35.45749 -33.37247 -32.37866 -30.42403 -29.78221 -26.93723 -26.43755 -23.69007 -23.12878 -21.50451 -21.30274 -18.97947 -18.07852 -17.40655 -17.04746 -16.78659 -16.47751 -16.11936 -15.65500 -14.89603 -14.76112 -14.31144 -14.21407 -14.08721 -13.54269 -13.24593 -13.10494 -12.95105 -12.74861 -12.54618 -12.48305 -12.16048 -11.93938 -11.77405 -11.50592 -11.48691 -11.33862 -10.61785 -9.57086 -9.41470 -8.98558 -8.25367 -6.39353 0.36025 0.56304 1.40493 1.41887 1.55326 2.32114 2.60310 2.80224 3.08595 3.42739 3.66216 3.80585 4.07522 4.12819 4.18268 4.25382 4.28526 4.34460 4.47768 4.62727 4.73530 4.78162 4.84999 4.94916 5.04372 5.14386 5.25042 5.35381 5.48335 5.50313 5.52885 5.61269 5.71424 5.96745 6.10147 6.33296 6.65192 6.72109 6.76291 7.30674 8.87999 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.035004 B = 0.004838 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.725047 B = 5786.063548 C = 6511.283081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.977 3.023 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.035 3.965 10 C 0.083 3.917 11 O -0.316 6.316 12 C 0.134 3.866 13 C -0.238 4.238 14 C -0.075 4.075 15 C -0.157 4.157 16 C -0.062 4.062 17 C -0.163 4.163 18 C 0.139 3.861 19 H 0.077 0.923 20 N -0.848 5.848 21 C -0.144 4.144 22 C -0.072 4.072 23 H 0.267 0.733 24 H -0.006 1.006 25 H -0.003 1.003 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.125 0.875 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.349 0.651 32 H 0.340 0.660 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.234 -20.721 0.950 21.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.800 3.200 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.087 0.913 9 C -0.002 4.002 10 C 0.008 3.992 11 O -0.229 6.229 12 C 0.088 3.912 13 C -0.257 4.257 14 C -0.093 4.093 15 C -0.175 4.175 16 C -0.063 4.063 17 C -0.164 4.164 18 C 0.028 3.972 19 H 0.095 0.905 20 N -0.378 5.378 21 C -0.183 4.183 22 C -0.110 4.110 23 H 0.075 0.925 24 H 0.012 0.988 25 H 0.015 0.985 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.143 0.857 29 H 0.169 0.831 30 H 0.169 0.831 31 H 0.163 0.837 32 H 0.154 0.846 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.083 -19.952 0.493 20.595 hybrid contribution 0.026 0.607 0.419 0.738 sum 5.109 -19.345 0.912 20.029 Atomic orbital electron populations 1.70141 1.08063 1.28100 1.50647 1.26042 0.95816 1.03653 0.94125 0.85232 0.78991 0.77851 0.77936 1.18213 1.20145 1.20123 1.21439 0.93720 0.91164 1.52106 0.91347 1.18876 0.94327 0.91260 0.95729 1.22796 0.95381 0.81264 0.99736 1.86272 1.36198 1.12925 1.87501 1.19214 0.90534 0.86353 0.95123 1.21427 0.92483 1.00936 1.10861 1.21159 1.00756 0.91092 0.96253 1.20808 0.93044 0.98432 1.05202 1.20822 0.93969 0.95054 0.96438 1.20090 0.97122 0.90474 1.08685 1.20864 0.88949 0.90748 0.96672 0.90505 1.58519 1.07171 1.60235 1.11908 1.23172 0.98160 0.95034 1.01941 1.21051 0.92121 0.94230 1.03558 0.92467 0.98751 0.98480 0.92839 0.92945 0.85730 0.83082 0.83130 0.83690 0.84649 0.88483 0.90485 0.88477 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.99 13.29 21.45 0.28 -57.71 16 2 C 0.00 0.12 5.46 84.65 0.46 0.59 16 3 Si 0.98 44.51 29.54 68.60 2.03 46.53 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.55 -31.98 9.11 25.60 0.23 -31.74 16 8 H 0.07 3.76 7.74 -2.91 -0.02 3.73 16 9 C 0.04 2.03 5.34 29.85 0.16 2.19 16 10 C 0.08 3.90 4.68 71.98 0.34 4.23 16 11 O -0.32 -14.34 9.69 -92.42 -0.90 -15.23 16 12 C 0.13 5.06 6.68 22.54 0.15 5.21 16 13 C -0.24 -7.84 9.03 22.34 0.20 -7.64 16 14 C -0.07 -1.88 10.04 22.22 0.22 -1.66 16 15 C -0.16 -3.51 10.04 22.32 0.22 -3.29 16 16 C -0.06 -1.52 6.14 -19.60 -0.12 -1.64 16 17 C -0.16 -5.12 5.72 -19.50 -0.11 -5.23 16 18 C 0.14 3.75 3.95 44.93 0.18 3.93 16 19 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 20 N -0.85 -24.75 8.88 -168.64 -1.50 -26.24 16 21 C -0.14 -2.50 6.78 31.59 0.21 -2.28 16 22 C -0.07 -1.19 6.76 30.51 0.21 -0.99 16 23 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 24 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 25 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 26 H 0.05 2.39 7.66 -2.38 -0.02 2.37 16 27 H 0.05 2.34 7.66 -2.39 -0.02 2.32 16 28 H 0.12 4.12 6.29 -2.91 -0.02 4.10 16 29 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 30 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 31 H 0.35 8.28 9.08 -89.69 -0.81 7.47 16 32 H 0.34 9.56 8.94 -89.69 -0.80 8.76 16 33 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.26 8.06 -2.39 -0.02 1.24 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -71.07 301.12 1.75 -69.32 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -0.53 Total: 21.66 kcal Atomic # 6 Polarization: -40.69 SS G_CDS: 2.36 Total: -38.33 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -1.21 Total: -83.95 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.90 Total: -15.23 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -71.07 1.75 -69.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309520029.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.572 kcal (2) G-P(sol) polarization free energy of solvation -71.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds