Wall clock time and date at job start Mon Mar 30 2020 06:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99860 * 2 1 4 4 H 1.48500 * 109.47095 * 270.00210 * 3 2 1 5 5 H 1.48499 * 109.47113 * 30.00000 * 3 2 1 6 6 H 1.48497 * 109.47080 * 150.00215 * 3 2 1 7 7 C 1.37875 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99573 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00370 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47333 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00153 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47278 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47281 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47361 * 180.02562 * 13 12 11 15 15 O 1.21250 * 119.99733 * 0.02562 * 14 13 12 16 16 C 1.47164 * 119.99851 * 180.02562 * 14 13 12 17 17 C 1.39855 * 120.16680 * 180.02562 * 16 14 13 18 18 C 1.37890 * 119.82316 * 179.97438 * 17 16 14 19 19 C 1.38404 * 120.17220 * 359.97438 * 18 17 16 20 20 C 1.38409 * 120.34828 * 0.04376 * 19 18 17 21 21 C 1.37888 * 120.17293 * 359.95823 * 20 19 18 22 22 H 0.96998 * 119.99998 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.46835 * 59.99798 * 9 7 2 24 24 H 1.08998 * 109.47501 * 300.00754 * 9 7 2 25 25 H 1.00903 * 110.99613 * 303.95674 * 10 9 7 26 26 H 1.09001 * 109.46880 * 60.00079 * 11 10 9 27 27 H 1.08998 * 109.47104 * 300.00754 * 11 10 9 28 28 H 1.09001 * 109.47026 * 60.00260 * 12 11 10 29 29 H 1.08995 * 109.47248 * 300.00463 * 12 11 10 30 30 H 1.09001 * 109.46706 * 60.00274 * 13 12 11 31 31 H 1.08995 * 109.47529 * 300.00501 * 13 12 11 32 32 H 1.07999 * 120.09085 * 359.69867 * 17 16 14 33 33 H 1.08000 * 119.91186 * 180.02562 * 18 17 16 34 34 H 1.07998 * 119.82754 * 180.02562 * 19 18 17 35 35 H 1.07996 * 119.91489 * 179.97438 * 20 19 18 36 36 H 1.07996 * 120.08508 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5055 -4.9070 -0.0024 12 6 2.5303 -6.0430 -0.0043 13 6 1.8010 -7.3880 -0.0044 14 6 2.8105 -8.5069 -0.0056 15 8 3.9962 -8.2536 -0.0060 16 6 2.3571 -9.9069 -0.0065 17 6 3.2909 -10.9481 -0.0071 18 6 2.8582 -12.2573 -0.0074 19 6 1.5038 -12.5423 -0.0064 20 6 0.5735 -11.5175 -0.0062 21 6 0.9903 -10.2032 -0.0060 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5566 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8400 -3.5482 -0.7836 26 1 0.8802 -4.9808 -0.8922 27 1 0.8809 -4.9821 0.8877 28 1 3.1559 -5.9694 0.8852 29 1 3.1545 -5.9676 -0.8947 30 1 1.1751 -7.4618 -0.8937 31 1 1.1771 -7.4630 0.8862 32 1 4.3480 -10.7273 -0.0119 33 1 3.5780 -13.0624 -0.0074 34 1 1.1711 -13.5698 -0.0062 35 1 -0.4816 -11.7479 -0.0059 36 1 0.2632 -9.4046 -0.0062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309528668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:38 Heat of formation + Delta-G solvation = -27.595616 kcal Electronic energy + Delta-G solvation = -16329.020713 eV Core-core repulsion = 13584.425547 eV Total energy + Delta-G solvation = -2744.595166 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.22679 -38.40600 -35.88531 -33.32004 -32.16604 -31.34156 -31.16062 -27.63003 -25.41560 -23.63318 -22.72035 -21.43898 -20.99202 -19.69317 -17.54426 -16.40267 -15.93257 -15.80545 -15.72852 -14.76965 -14.56865 -14.51552 -14.19178 -13.83254 -13.41399 -13.19081 -12.84320 -12.48274 -12.01942 -11.75096 -11.60767 -11.51325 -11.34755 -10.94276 -10.71063 -10.58734 -10.38735 -9.95863 -9.68060 -9.34415 -9.28869 -9.14206 -8.46120 -7.25765 -6.01328 -4.03031 0.40787 1.02942 2.25398 3.33786 3.39494 3.44913 3.51148 3.81930 4.45407 4.47669 4.58942 4.70099 4.92531 4.97702 5.06192 5.14438 5.19286 5.34577 5.48877 5.54359 5.63732 5.76381 5.81261 5.97665 5.98806 6.08425 6.12907 6.14973 6.51327 6.53756 6.62345 7.27665 7.42683 7.45013 7.81564 8.15397 8.43155 8.65069 9.06608 9.61885 11.09924 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.065919 B = 0.002919 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.662758 B = 9591.551270 C = 9983.142459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.692 5.692 11 C 0.059 3.941 12 C -0.107 4.107 13 C -0.164 4.164 14 C 0.394 3.606 15 O -0.448 6.448 16 C -0.167 4.167 17 C -0.065 4.065 18 C -0.135 4.135 19 C -0.093 4.093 20 C -0.134 4.134 21 C -0.073 4.073 22 H 0.261 0.739 23 H -0.014 1.014 24 H 0.028 0.972 25 H 0.329 0.671 26 H 0.017 0.983 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.650 -25.401 -0.822 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.322 5.322 11 C -0.071 4.071 12 C -0.145 4.145 13 C -0.202 4.202 14 C 0.271 3.729 15 O -0.322 6.322 16 C -0.168 4.168 17 C -0.083 4.083 18 C -0.153 4.153 19 C -0.111 4.111 20 C -0.152 4.152 21 C -0.091 4.091 22 H 0.071 0.929 23 H 0.003 0.997 24 H 0.046 0.954 25 H 0.145 0.855 26 H 0.035 0.965 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.201 -25.111 -0.125 25.140 hybrid contribution -0.170 0.775 -0.915 1.211 sum 1.031 -24.336 -1.040 24.380 Atomic orbital electron populations 1.69968 1.06093 1.26766 1.51076 1.25002 0.94897 0.99406 0.95364 0.86470 0.79816 0.82939 0.78029 1.20719 1.21236 1.19736 1.21212 0.93577 0.90283 1.50152 0.91928 1.19556 0.90616 0.87450 0.95718 1.60642 1.21277 1.01326 1.48979 1.21879 0.95186 0.90383 0.99627 1.21406 0.98238 0.91389 1.03512 1.22033 0.99027 0.94601 1.04542 1.22622 0.89957 0.89137 0.71136 1.90527 1.19629 1.86459 1.35626 1.20683 0.94447 0.95336 1.06319 1.21482 1.00158 0.92033 0.94608 1.21172 0.96062 0.96514 1.01519 1.21433 0.93270 0.99543 0.96877 1.21183 1.00052 0.92629 1.01346 1.21547 0.94725 0.97271 0.95535 0.92935 0.99657 0.95437 0.85488 0.96488 0.91831 0.90701 0.91808 0.88422 0.88193 0.84922 0.85482 0.85669 0.85341 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.96 9.32 -34.44 -0.32 -15.28 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.19 5.22 5.44 -4.98 -0.03 5.19 16 10 N -0.69 -15.48 6.49 -115.06 -0.75 -16.23 16 11 C 0.06 1.06 5.68 -3.83 -0.02 1.04 16 12 C -0.11 -1.61 4.76 -26.73 -0.13 -1.73 16 13 C -0.16 -1.85 4.31 -27.88 -0.12 -1.97 16 14 C 0.39 4.85 7.12 -30.69 -0.22 4.63 16 15 O -0.45 -6.97 15.98 5.58 0.09 -6.88 16 16 C -0.17 -1.73 5.87 -105.07 -0.62 -2.35 16 17 C -0.06 -0.63 9.60 -39.10 -0.38 -1.01 16 18 C -0.13 -1.03 10.03 -39.65 -0.40 -1.43 16 19 C -0.09 -0.63 10.04 -39.46 -0.40 -1.03 16 20 C -0.13 -0.95 10.03 -39.65 -0.40 -1.35 16 21 C -0.07 -0.60 9.47 -39.11 -0.37 -0.97 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H -0.01 -0.41 8.14 -51.92 -0.42 -0.83 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.33 7.06 8.72 -39.29 -0.34 6.72 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 29 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 30 H 0.10 0.93 8.09 -51.93 -0.42 0.51 16 31 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 32 H 0.13 1.30 7.65 -52.49 -0.40 0.90 16 33 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.13 0.87 7.05 -52.49 -0.37 0.50 16 LS Contribution 312.41 15.07 4.71 4.71 Total: -1.00 -33.01 312.41 -9.02 -42.03 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.30 Total: 0.65 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -3.49 Total: -14.77 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: -0.01 Total: -42.79 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: 0.09 Total: -6.88 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.01 -9.02 -42.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309528668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.434 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds