Wall clock time and date at job start Mon Mar 30 2020 06:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99860 * 2 1 4 4 H 1.48500 * 109.47095 * 270.00210 * 3 2 1 5 5 H 1.48499 * 109.47113 * 30.00000 * 3 2 1 6 6 H 1.48497 * 109.47080 * 150.00215 * 3 2 1 7 7 C 1.37875 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99573 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00370 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47333 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00153 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47278 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47281 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47361 * 180.02562 * 13 12 11 15 15 O 1.21250 * 119.99733 * 0.02562 * 14 13 12 16 16 C 1.47164 * 119.99851 * 180.02562 * 14 13 12 17 17 C 1.39855 * 120.16680 * 180.02562 * 16 14 13 18 18 C 1.37890 * 119.82316 * 179.97438 * 17 16 14 19 19 C 1.38404 * 120.17220 * 359.97438 * 18 17 16 20 20 C 1.38409 * 120.34828 * 0.04376 * 19 18 17 21 21 C 1.37888 * 120.17293 * 359.95823 * 20 19 18 22 22 H 0.96998 * 119.99998 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.46835 * 59.99798 * 9 7 2 24 24 H 1.08998 * 109.47501 * 300.00754 * 9 7 2 25 25 H 1.00903 * 110.99613 * 303.95674 * 10 9 7 26 26 H 1.09001 * 109.46880 * 60.00079 * 11 10 9 27 27 H 1.08998 * 109.47104 * 300.00754 * 11 10 9 28 28 H 1.09001 * 109.47026 * 60.00260 * 12 11 10 29 29 H 1.08995 * 109.47248 * 300.00463 * 12 11 10 30 30 H 1.09001 * 109.46706 * 60.00274 * 13 12 11 31 31 H 1.08995 * 109.47529 * 300.00501 * 13 12 11 32 32 H 1.07999 * 120.09085 * 359.69867 * 17 16 14 33 33 H 1.08000 * 119.91186 * 180.02562 * 18 17 16 34 34 H 1.07998 * 119.82754 * 180.02562 * 19 18 17 35 35 H 1.07996 * 119.91489 * 179.97438 * 20 19 18 36 36 H 1.07996 * 120.08508 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5055 -4.9070 -0.0024 12 6 2.5303 -6.0430 -0.0043 13 6 1.8010 -7.3880 -0.0044 14 6 2.8105 -8.5069 -0.0056 15 8 3.9962 -8.2536 -0.0060 16 6 2.3571 -9.9069 -0.0065 17 6 3.2909 -10.9481 -0.0071 18 6 2.8582 -12.2573 -0.0074 19 6 1.5038 -12.5423 -0.0064 20 6 0.5735 -11.5175 -0.0062 21 6 0.9903 -10.2032 -0.0060 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5566 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8400 -3.5482 -0.7836 26 1 0.8802 -4.9808 -0.8922 27 1 0.8809 -4.9821 0.8877 28 1 3.1559 -5.9694 0.8852 29 1 3.1545 -5.9676 -0.8947 30 1 1.1751 -7.4618 -0.8937 31 1 1.1771 -7.4630 0.8862 32 1 4.3480 -10.7273 -0.0119 33 1 3.5780 -13.0624 -0.0074 34 1 1.1711 -13.5698 -0.0062 35 1 -0.4816 -11.7479 -0.0059 36 1 0.2632 -9.4046 -0.0062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309528668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:37 Heat of formation + Delta-G solvation = -48.532793 kcal Electronic energy + Delta-G solvation = -16329.928617 eV Core-core repulsion = 13584.425547 eV Total energy + Delta-G solvation = -2745.503070 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.06882 -39.17578 -37.54768 -35.11012 -33.65463 -32.25434 -31.86153 -29.30194 -26.96749 -24.66441 -23.57735 -23.19760 -22.26359 -20.56482 -18.63902 -18.17825 -17.09314 -16.73370 -16.67253 -16.50720 -15.97793 -15.31762 -15.27631 -14.85221 -14.66378 -14.39057 -14.36305 -13.61101 -13.50560 -13.11996 -12.97338 -12.65623 -12.59014 -12.44637 -12.30409 -11.96714 -11.95889 -11.71201 -11.31744 -10.68436 -10.67030 -9.93959 -9.93071 -9.12757 -8.23952 -6.35197 -0.30807 0.43901 1.40617 1.42493 1.44887 1.54569 2.39538 2.87389 2.92486 3.09087 3.60841 3.84425 4.02785 4.03945 4.10892 4.22733 4.26632 4.47104 4.49693 4.58608 4.66873 4.72840 4.80074 4.94795 5.05215 5.09032 5.20256 5.25301 5.32759 5.39362 5.49074 5.51785 5.61149 5.97356 6.01409 6.43970 6.52854 6.71616 6.87210 7.35778 8.87740 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.065919 B = 0.002919 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.662758 B = 9591.551270 C = 9983.142459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.208 3.792 10 N -0.698 5.698 11 C 0.061 3.939 12 C -0.096 4.096 13 C -0.158 4.158 14 C 0.397 3.603 15 O -0.495 6.495 16 C -0.191 4.191 17 C -0.085 4.085 18 C -0.139 4.139 19 C -0.088 4.088 20 C -0.136 4.136 21 C -0.073 4.073 22 H 0.266 0.734 23 H -0.036 1.036 24 H 0.002 0.998 25 H 0.334 0.666 26 H 0.026 0.974 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.147 0.853 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.096 -26.623 -0.964 26.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.080 3.920 10 N -0.328 5.328 11 C -0.069 4.069 12 C -0.134 4.134 13 C -0.195 4.195 14 C 0.278 3.722 15 O -0.373 6.373 16 C -0.192 4.192 17 C -0.103 4.103 18 C -0.157 4.157 19 C -0.105 4.105 20 C -0.154 4.154 21 C -0.091 4.091 22 H 0.075 0.925 23 H -0.019 1.019 24 H 0.020 0.980 25 H 0.150 0.850 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.164 0.836 34 H 0.173 0.827 35 H 0.174 0.826 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.447 -26.364 -0.270 26.369 hybrid contribution 0.003 1.026 -0.868 1.344 sum 0.449 -25.337 -1.138 25.367 Atomic orbital electron populations 1.70084 1.07738 1.28091 1.51425 1.25966 0.95855 1.03403 0.94486 0.85311 0.78434 0.77868 0.78553 1.19555 1.20445 1.19094 1.21566 0.93779 0.91627 1.50812 0.92007 1.19217 0.90612 0.88809 0.93376 1.60534 1.20833 1.02085 1.49375 1.21962 0.95823 0.88995 1.00084 1.21227 0.97400 0.92472 1.02301 1.22022 0.98825 0.91871 1.06795 1.22944 0.89326 0.90449 0.69475 1.90513 1.21306 1.87138 1.38319 1.20603 0.95732 0.94082 1.08804 1.21564 0.99701 0.93231 0.95811 1.21440 0.97305 0.95996 1.00979 1.21856 0.92687 1.01138 0.94860 1.21577 1.01610 0.92035 1.00171 1.21803 0.93890 0.98689 0.94762 0.92503 1.01873 0.97965 0.84969 0.95541 0.91642 0.92446 0.92601 0.85956 0.85946 0.86268 0.83551 0.82715 0.82600 0.82911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.54 -31.81 9.32 25.60 0.24 -31.58 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.49 5.44 85.56 0.47 11.95 16 10 N -0.70 -31.70 6.49 -517.95 -3.36 -35.06 16 11 C 0.06 2.15 5.68 86.30 0.49 2.64 16 12 C -0.10 -2.86 4.76 30.59 0.15 -2.72 16 13 C -0.16 -3.35 4.31 29.85 0.13 -3.22 16 14 C 0.40 9.79 7.12 28.03 0.20 9.99 16 15 O -0.49 -16.08 15.98 -2.94 -0.05 -16.13 16 16 C -0.19 -3.85 5.87 -20.15 -0.12 -3.97 16 17 C -0.08 -1.66 9.60 22.58 0.22 -1.44 16 18 C -0.14 -1.91 10.03 22.23 0.22 -1.69 16 19 C -0.09 -0.92 10.04 22.35 0.22 -0.69 16 20 C -0.14 -1.47 10.03 22.23 0.22 -1.25 16 21 C -0.07 -1.04 9.47 22.58 0.21 -0.83 16 22 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 23 H -0.04 -2.13 8.14 -2.38 -0.02 -2.15 16 24 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 25 H 0.33 14.54 8.72 -89.69 -0.78 13.76 16 26 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 29 H 0.06 1.74 8.10 -2.39 -0.02 1.72 16 30 H 0.12 2.03 8.09 -2.39 -0.02 2.01 16 31 H 0.12 2.08 8.09 -2.39 -0.02 2.06 16 32 H 0.12 2.53 7.65 -2.91 -0.02 2.51 16 33 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 35 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 36 H 0.15 1.50 7.05 -2.91 -0.02 1.47 16 Total: -1.00 -72.50 312.41 2.29 -70.20 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.28 Total: 12.88 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 3.11 Total: -22.26 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -3.08 Total: -91.84 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.05 Total: -16.13 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -72.50 2.29 -70.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309528668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.671 kcal (2) G-P(sol) polarization free energy of solvation -72.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds