Wall clock time and date at job start Mon Mar 30 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47328 * 2 1 4 4 C 1.50699 * 109.47270 * 240.00314 * 2 1 3 5 5 H 1.07999 * 120.00158 * 274.99803 * 4 2 1 6 6 C 1.37883 * 120.00079 * 94.99647 * 4 2 1 7 7 N 1.31514 * 119.99767 * 184.91430 * 6 4 2 8 8 Si 1.86789 * 119.99913 * 4.91850 * 6 4 2 9 9 H 1.48498 * 109.47562 * 84.82799 * 8 6 4 10 10 H 1.48507 * 109.47031 * 204.82988 * 8 6 4 11 11 H 1.48503 * 109.47390 * 324.82497 * 8 6 4 12 12 N 1.46902 * 109.47307 * 120.00164 * 2 1 3 13 13 C 1.46899 * 110.99739 * 274.99703 * 12 2 1 14 14 C 1.47205 * 109.46772 * 179.97438 * 13 12 2 15 15 C 4.81934 * 107.38630 * 103.63545 * 2 1 3 16 16 C 6.20185 * 108.03825 * 107.68543 * 2 1 3 17 17 C 1.39568 * 120.12782 * 332.75221 * 16 15 14 18 18 C 1.37963 * 119.90369 * 179.76711 * 17 16 15 19 19 C 1.38328 * 120.17137 * 0.51062 * 18 17 16 20 20 C 1.38544 * 120.25869 * 359.73972 * 19 18 17 21 21 F 1.35103 * 119.95363 * 180.02562 * 20 19 18 22 22 C 1.38222 * 120.09383 * 0.02562 * 20 19 18 23 23 H 1.09000 * 109.47208 * 295.04834 * 1 2 3 24 24 H 1.09000 * 109.47359 * 55.05306 * 1 2 3 25 25 H 1.09003 * 109.46960 * 175.05089 * 1 2 3 26 26 H 0.97004 * 120.00082 * 180.02562 * 7 6 4 27 27 H 1.00900 * 110.99891 * 151.05107 * 12 2 1 28 28 H 1.08997 * 109.47510 * 299.99990 * 13 12 2 29 29 H 1.09003 * 109.46974 * 60.00490 * 13 12 2 30 30 H 1.07995 * 120.04920 * 359.97438 * 17 16 15 31 31 H 1.07998 * 119.91576 * 180.24636 * 18 17 16 32 32 H 1.08001 * 119.87216 * 179.76388 * 19 18 17 33 33 H 1.07995 * 120.08902 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1355 -1.7854 -1.2291 6 6 2.3602 0.0123 -2.3581 7 7 2.7059 -0.6130 -3.4622 8 14 2.3134 1.8791 -2.3174 9 1 3.5989 2.3950 -1.7821 10 1 2.1056 2.3992 -3.6928 11 1 1.1984 2.3275 -1.4451 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3468 14 6 2.5757 -0.5046 3.5279 15 6 2.9700 -1.0842 4.4695 16 6 3.4504 -1.7915 5.6183 17 6 2.5484 -2.3736 6.5103 18 6 3.0164 -3.0580 7.6130 19 6 4.3767 -3.1597 7.8424 20 6 5.2781 -2.5800 6.9644 21 9 6.6054 -2.6835 7.1942 22 6 4.8213 -1.8959 5.8535 23 1 -0.3633 0.4351 0.9310 24 1 -0.3634 0.5887 -0.8423 25 1 -0.3633 -1.0239 -0.0887 26 1 2.9370 -0.1047 -4.2555 27 1 2.9173 -1.1204 1.0287 28 1 2.7589 1.0462 2.1182 29 1 1.0871 0.6162 2.5525 30 1 1.4859 -2.2913 6.3357 31 1 2.3187 -3.5120 8.3011 32 1 4.7376 -3.6934 8.7092 33 1 5.5239 -1.4445 5.1689 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309553023.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:42 Heat of formation + Delta-G solvation = 22.976813 kcal Electronic energy + Delta-G solvation = -15942.913435 eV Core-core repulsion = 13077.050949 eV Total energy + Delta-G solvation = -2865.862486 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.09214 -39.18817 -36.51436 -33.98166 -32.47163 -31.09935 -30.67812 -29.00490 -25.72050 -24.74811 -23.12103 -22.75529 -19.78965 -18.74944 -17.25856 -16.53283 -16.44474 -15.97335 -15.79497 -15.26079 -14.36446 -14.21053 -14.03435 -13.74662 -13.51262 -12.98103 -12.67758 -12.52436 -12.18547 -11.97300 -11.52579 -11.18399 -11.05432 -10.86915 -10.69624 -10.44335 -9.92646 -9.81211 -9.13144 -9.08602 -8.68263 -8.61531 -7.59589 -6.17759 -4.19486 0.62592 0.94722 2.72204 2.77617 3.19985 3.29608 3.30062 3.71037 3.90990 4.21729 4.31580 4.61093 4.69788 4.89386 5.06178 5.10056 5.24931 5.37463 5.73294 5.78888 5.80448 5.83011 5.94310 6.08577 6.20680 6.31947 6.57847 6.62025 6.73406 6.79694 7.32705 7.53645 7.62138 7.82650 8.25020 8.55094 8.91527 9.45020 10.95086 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.035457 B = 0.003574 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.506653 B = 7833.366014 C = 8173.652425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.180 3.820 3 H 0.007 0.993 4 C -0.522 4.522 5 H 0.081 0.919 6 C 0.074 3.926 7 N -0.893 5.893 8 Si 0.876 3.124 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.680 5.680 13 C 0.156 3.844 14 C -0.095 4.095 15 C -0.185 4.185 16 C 0.069 3.931 17 C -0.111 4.111 18 C -0.089 4.089 19 C -0.155 4.155 20 C 0.100 3.900 21 F -0.139 7.139 22 C -0.138 4.138 23 H 0.021 0.979 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.266 0.734 27 H 0.346 0.654 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 -1.090 21.108 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.072 3.928 3 H 0.025 0.975 4 C -0.560 4.560 5 H 0.099 0.901 6 C -0.129 4.129 7 N -0.530 5.530 8 Si 0.703 3.297 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.189 1.189 12 N -0.313 5.313 13 C 0.028 3.972 14 C -0.095 4.095 15 C -0.186 4.186 16 C 0.069 3.931 17 C -0.129 4.129 18 C -0.107 4.107 19 C -0.174 4.174 20 C 0.081 3.919 21 F -0.118 7.118 22 C -0.157 4.157 23 H 0.040 0.960 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.165 0.835 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.782 -1.306 21.053 21.108 hybrid contribution 1.068 1.494 -0.357 1.871 sum 1.850 0.188 20.696 20.779 Atomic orbital electron populations 1.21861 0.97794 1.00959 0.97891 1.19620 0.92655 0.92577 0.87944 0.97513 1.21048 1.44019 0.95995 0.94938 0.90114 1.25038 0.94259 0.98303 0.95297 1.69897 1.45568 1.35916 1.01666 0.86889 0.79017 0.86390 0.77430 1.20262 1.21268 1.18889 1.60814 1.33664 1.32134 1.04662 1.19124 0.99924 0.92659 0.85534 1.22634 0.96573 0.96180 0.94159 1.18784 1.03494 1.00584 0.95787 1.15579 0.91499 0.95444 0.90623 1.21355 1.00173 0.97475 0.93923 1.20932 0.94584 0.97959 0.97227 1.21215 0.93400 1.02362 1.00379 1.17514 0.77605 1.00535 0.96262 1.91511 1.31324 1.94525 1.94409 1.21235 0.95769 1.01114 0.97543 0.95980 0.93804 0.92815 0.92440 0.83535 0.93094 0.88918 0.84772 0.84536 0.84619 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.42 37.15 0.35 -2.33 16 2 C 0.18 4.11 2.26 -68.87 -0.16 3.96 16 3 H 0.01 0.16 4.95 -51.93 -0.26 -0.09 16 4 C -0.52 -14.24 8.84 -34.44 -0.30 -14.55 16 5 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.89 -26.66 13.96 55.43 0.77 -25.88 16 8 Si 0.88 20.83 26.99 -169.99 -4.59 16.25 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.26 -5.99 6.82 56.52 0.39 -5.61 16 12 N -0.68 -13.84 6.27 -111.04 -0.70 -14.54 16 13 C 0.16 2.62 5.96 -6.61 -0.04 2.58 16 14 C -0.09 -1.54 13.60 -37.12 -0.50 -2.04 16 15 C -0.19 -2.83 13.24 -38.84 -0.51 -3.34 16 16 C 0.07 0.89 5.72 -107.01 -0.61 0.28 16 17 C -0.11 -1.17 9.75 -39.19 -0.38 -1.55 16 18 C -0.09 -0.75 10.03 -39.65 -0.40 -1.15 16 19 C -0.15 -1.39 10.02 -39.44 -0.40 -1.79 16 20 C 0.10 1.11 7.29 -39.47 -0.29 0.82 16 21 F -0.14 -1.62 17.26 2.25 0.04 -1.58 16 22 C -0.14 -1.67 9.73 -39.12 -0.38 -2.05 16 23 H 0.02 0.40 7.35 -51.93 -0.38 0.02 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.35 7.21 8.33 -39.29 -0.33 6.89 16 28 H 0.05 0.82 8.05 -51.93 -0.42 0.41 16 29 H 0.09 1.45 7.36 -51.93 -0.38 1.06 16 30 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 297.79 15.07 4.49 4.49 Total: -1.00 -29.54 297.79 -7.58 -37.13 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -3.88 Total: 3.33 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -3.72 Total: -19.19 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.08 Total: -40.42 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.59 Total: 16.25 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.54 -7.58 -37.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309553023.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.105 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds