Wall clock time and date at job start Mon Mar 30 2020 06:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86801 * 119.99949 * 2 1 4 4 H 1.48503 * 109.47421 * 270.00361 * 3 2 1 5 5 H 1.48502 * 109.47010 * 30.00240 * 3 2 1 6 6 H 1.48498 * 109.47443 * 150.00509 * 3 2 1 7 7 C 1.38650 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00048 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00326 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00101 * 185.05731 * 9 7 2 11 11 C 1.38878 * 120.07147 * 354.46447 * 10 9 7 12 12 C 1.38094 * 119.92859 * 179.72501 * 11 10 9 13 13 C 1.38302 * 120.07461 * 0.27306 * 12 11 10 14 14 C 1.50696 * 119.93469 * 180.02562 * 13 12 11 15 15 H 1.08996 * 109.46944 * 340.00056 * 14 13 12 16 16 N 1.46899 * 109.47321 * 219.99978 * 14 13 12 17 17 C 1.52997 * 109.47313 * 99.99754 * 14 13 12 18 18 C 1.53003 * 109.47174 * 185.00240 * 17 14 13 19 19 C 1.53000 * 117.49619 * 243.74557 * 18 17 14 20 20 C 1.52999 * 117.49816 * 175.08654 * 18 17 14 21 21 C 1.38300 * 120.13466 * 359.97438 * 13 12 11 22 22 C 1.38104 * 120.06821 * 0.02846 * 21 13 12 23 23 H 0.97006 * 120.00005 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.03039 * 359.97438 * 11 10 9 25 25 H 1.08002 * 119.96210 * 180.25485 * 12 11 10 26 26 H 1.00896 * 110.99922 * 176.04456 * 16 14 13 27 27 H 1.00900 * 110.99836 * 300.00235 * 16 14 13 28 28 H 1.09008 * 109.47317 * 305.00341 * 17 14 13 29 29 H 1.08999 * 109.47444 * 64.99726 * 17 14 13 30 30 H 1.08997 * 115.54918 * 29.41722 * 18 17 14 31 31 H 1.09003 * 117.50303 * 0.02562 * 19 18 17 32 32 H 1.08998 * 117.49539 * 145.01823 * 19 18 17 33 33 H 1.08997 * 117.50052 * 214.97711 * 20 18 17 34 34 H 1.09005 * 117.49707 * 359.97438 * 20 18 17 35 35 H 1.07996 * 119.96723 * 179.97438 * 21 13 12 36 36 H 1.08003 * 120.03296 * 179.97438 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0466 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4403 0.6999 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1055 11 6 3.4573 -3.4394 0.0921 12 6 4.2025 -4.5965 0.2059 13 6 3.5689 -5.8198 0.3275 14 6 4.3852 -7.0803 0.4521 15 1 5.3936 -6.8984 0.0804 16 7 3.7582 -8.1497 -0.3361 17 6 4.4517 -7.5018 1.9214 18 6 5.3816 -8.7084 2.0643 19 6 4.7651 -10.0217 2.5501 20 6 5.6729 -9.2121 3.4793 21 6 2.1877 -5.8884 0.3361 22 6 1.4368 -4.7349 0.2226 23 1 -0.4850 0.8401 0.0004 24 1 3.9527 -2.4845 -0.0033 25 1 5.2814 -4.5460 0.1996 26 1 4.3207 -8.9872 -0.3212 27 1 2.8217 -8.3372 -0.0107 28 1 4.8348 -6.6749 2.5196 29 1 3.4536 -7.7691 2.2683 30 1 6.1867 -8.7708 1.3322 31 1 3.6970 -10.0263 2.7675 32 1 5.1648 -10.9481 2.1378 33 1 6.6695 -9.6062 3.6781 34 1 5.2025 -8.6835 4.3085 35 1 1.6957 -6.8452 0.4308 36 1 0.3581 -4.7893 0.2290 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309569416.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:02 Heat of formation + Delta-G solvation = 11.774051 kcal Electronic energy + Delta-G solvation = -17113.330932 eV Core-core repulsion = 14370.442963 eV Total energy + Delta-G solvation = -2742.887969 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.26290 -38.15725 -36.66733 -34.31338 -32.20333 -30.23447 -28.99252 -28.03116 -25.41803 -22.99472 -22.57408 -21.96869 -20.55997 -19.97163 -17.92958 -16.94523 -16.10686 -15.84286 -14.78757 -14.45777 -14.29774 -14.13483 -13.65966 -13.59892 -13.36164 -13.10271 -12.64169 -12.33328 -11.90184 -11.73833 -11.60149 -11.36256 -11.20047 -10.83090 -10.71639 -10.50613 -10.39472 -10.26372 -10.09628 -9.30191 -8.81816 -8.51121 -8.13740 -7.12046 -6.42588 -4.01387 2.25666 2.35496 3.14226 3.14931 3.19791 3.59759 3.98692 4.42548 4.58464 4.73067 4.76744 4.92510 5.10231 5.13229 5.25139 5.35117 5.42227 5.54212 5.60335 5.70551 5.73063 5.87450 5.89970 5.91718 6.02431 6.22848 6.24453 6.48988 6.73075 6.92573 7.09143 7.20211 7.34523 7.45459 7.48106 7.61100 7.86593 8.02646 9.03224 9.74187 10.75629 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.044491 B = 0.004128 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.184053 B = 6782.002467 C = 7019.875538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.180 6.180 10 C 0.153 3.847 11 C -0.232 4.232 12 C -0.066 4.066 13 C -0.171 4.171 14 C 0.152 3.848 15 H 0.077 0.923 16 N -0.838 5.838 17 C -0.120 4.120 18 C -0.152 4.152 19 C -0.184 4.184 20 C -0.182 4.182 21 C -0.061 4.061 22 C -0.193 4.193 23 H 0.269 0.731 24 H 0.126 0.874 25 H 0.105 0.895 26 H 0.334 0.666 27 H 0.337 0.663 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.322 -14.572 3.993 17.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.100 3.900 11 C -0.252 4.252 12 C -0.085 4.085 13 C -0.172 4.172 14 C 0.041 3.959 15 H 0.096 0.904 16 N -0.367 5.367 17 C -0.160 4.160 18 C -0.170 4.170 19 C -0.221 4.221 20 C -0.219 4.219 21 C -0.079 4.079 22 C -0.212 4.212 23 H 0.079 0.921 24 H 0.144 0.856 25 H 0.123 0.877 26 H 0.147 0.853 27 H 0.150 0.850 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.125 0.875 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.967 -13.854 3.344 16.838 hybrid contribution 0.488 0.303 0.964 1.122 sum 9.456 -13.551 4.307 17.076 Atomic orbital electron populations 1.70042 1.05949 1.27600 1.46312 1.25280 0.95833 0.98803 0.96620 0.85721 0.78909 0.80140 0.78707 1.19886 1.20277 1.19218 1.21321 0.91787 0.80876 1.52799 0.89110 1.83977 1.34316 1.11440 1.78572 1.19385 0.90291 0.88043 0.92321 1.21126 0.93805 0.98841 1.11385 1.20551 0.98211 0.91777 0.97935 1.19086 0.93461 0.93230 1.11452 1.20058 0.97036 0.89543 0.89269 0.90448 1.58969 1.06590 1.11367 1.59735 1.22086 0.98387 0.96155 0.99333 1.22421 1.01850 0.95127 0.97573 1.23054 0.99195 0.95221 1.04631 1.22949 1.00690 1.04333 0.93939 1.20304 0.92962 0.96293 0.98377 1.20189 0.99481 0.90393 1.11153 0.92067 0.85613 0.87652 0.85347 0.84979 0.90965 0.91837 0.87907 0.88950 0.89057 0.89050 0.88858 0.87538 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.58 13.67 55.48 0.76 -24.82 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.39 -11.08 9.49 30.88 0.29 -10.78 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 9 O -0.18 -5.20 9.76 0.05 0.00 -5.20 16 10 C 0.15 3.76 6.65 -39.11 -0.26 3.50 16 11 C -0.23 -5.12 9.17 -39.40 -0.36 -5.48 16 12 C -0.07 -1.23 9.66 -39.61 -0.38 -1.61 16 13 C -0.17 -2.92 4.96 -104.58 -0.52 -3.43 16 14 C 0.15 2.00 3.00 -68.87 -0.21 1.79 16 15 H 0.08 1.01 8.00 -51.93 -0.42 0.60 16 16 N -0.84 -10.03 9.02 -5.66 -0.05 -10.08 16 17 C -0.12 -1.38 5.12 -26.73 -0.14 -1.52 16 18 C -0.15 -1.43 4.92 -90.62 -0.45 -1.87 16 19 C -0.18 -1.54 10.18 -26.69 -0.27 -1.81 16 20 C -0.18 -1.60 10.25 -26.69 -0.27 -1.87 16 21 C -0.06 -1.09 9.29 -39.61 -0.37 -1.46 16 22 C -0.19 -4.14 9.99 -39.39 -0.39 -4.54 16 23 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 25 H 0.11 1.67 8.03 -52.49 -0.42 1.25 16 26 H 0.33 3.31 8.30 -39.29 -0.33 2.98 16 27 H 0.34 3.84 7.34 -39.29 -0.29 3.55 16 28 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 29 H 0.06 0.75 7.88 -51.93 -0.41 0.34 16 30 H 0.10 0.93 8.08 -51.93 -0.42 0.52 16 31 H 0.09 0.78 8.03 -51.93 -0.42 0.36 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.11 1.60 6.66 -52.49 -0.35 1.25 16 36 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 303.57 15.07 4.57 4.57 Total: -1.00 -30.41 303.57 -8.03 -38.44 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -4.86 Total: 9.54 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -3.42 Total: -28.11 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.71 Total: -34.91 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: 0.00 Total: -5.20 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.41 -8.03 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309569416.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.210 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds