Wall clock time and date at job start Mon Mar 30 2020 06:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86801 * 119.99949 * 2 1 4 4 H 1.48503 * 109.47421 * 270.00361 * 3 2 1 5 5 H 1.48502 * 109.47010 * 30.00240 * 3 2 1 6 6 H 1.48498 * 109.47443 * 150.00509 * 3 2 1 7 7 C 1.38650 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00048 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00326 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00101 * 185.05731 * 9 7 2 11 11 C 1.38878 * 120.07147 * 354.46447 * 10 9 7 12 12 C 1.38094 * 119.92859 * 179.72501 * 11 10 9 13 13 C 1.38302 * 120.07461 * 0.27306 * 12 11 10 14 14 C 1.50696 * 119.93469 * 180.02562 * 13 12 11 15 15 H 1.08996 * 109.46944 * 340.00056 * 14 13 12 16 16 N 1.46899 * 109.47321 * 219.99978 * 14 13 12 17 17 C 1.52997 * 109.47313 * 99.99754 * 14 13 12 18 18 C 1.53003 * 109.47174 * 185.00240 * 17 14 13 19 19 C 1.53000 * 117.49619 * 243.74557 * 18 17 14 20 20 C 1.52999 * 117.49816 * 175.08654 * 18 17 14 21 21 C 1.38300 * 120.13466 * 359.97438 * 13 12 11 22 22 C 1.38104 * 120.06821 * 0.02846 * 21 13 12 23 23 H 0.97006 * 120.00005 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.03039 * 359.97438 * 11 10 9 25 25 H 1.08002 * 119.96210 * 180.25485 * 12 11 10 26 26 H 1.00896 * 110.99922 * 176.04456 * 16 14 13 27 27 H 1.00900 * 110.99836 * 300.00235 * 16 14 13 28 28 H 1.09008 * 109.47317 * 305.00341 * 17 14 13 29 29 H 1.08999 * 109.47444 * 64.99726 * 17 14 13 30 30 H 1.08997 * 115.54918 * 29.41722 * 18 17 14 31 31 H 1.09003 * 117.50303 * 0.02562 * 19 18 17 32 32 H 1.08998 * 117.49539 * 145.01823 * 19 18 17 33 33 H 1.08997 * 117.50052 * 214.97711 * 20 18 17 34 34 H 1.09005 * 117.49707 * 359.97438 * 20 18 17 35 35 H 1.07996 * 119.96723 * 179.97438 * 21 13 12 36 36 H 1.08003 * 120.03296 * 179.97438 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0466 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4403 0.6999 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1055 11 6 3.4573 -3.4394 0.0921 12 6 4.2025 -4.5965 0.2059 13 6 3.5689 -5.8198 0.3275 14 6 4.3852 -7.0803 0.4521 15 1 5.3936 -6.8984 0.0804 16 7 3.7582 -8.1497 -0.3361 17 6 4.4517 -7.5018 1.9214 18 6 5.3816 -8.7084 2.0643 19 6 4.7651 -10.0217 2.5501 20 6 5.6729 -9.2121 3.4793 21 6 2.1877 -5.8884 0.3361 22 6 1.4368 -4.7349 0.2226 23 1 -0.4850 0.8401 0.0004 24 1 3.9527 -2.4845 -0.0033 25 1 5.2814 -4.5460 0.1996 26 1 4.3207 -8.9872 -0.3212 27 1 2.8217 -8.3372 -0.0107 28 1 4.8348 -6.6749 2.5196 29 1 3.4536 -7.7691 2.2683 30 1 6.1867 -8.7708 1.3322 31 1 3.6970 -10.0263 2.7675 32 1 5.1648 -10.9481 2.1378 33 1 6.6695 -9.6062 3.6781 34 1 5.2025 -8.6835 4.3085 35 1 1.6957 -6.8452 0.4308 36 1 0.3581 -4.7893 0.2290 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309569416.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:02 Heat of formation + Delta-G solvation = -7.517131 kcal Electronic energy + Delta-G solvation = -17114.167461 eV Core-core repulsion = 14370.442963 eV Total energy + Delta-G solvation = -2743.724498 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.87758 -39.36278 -38.02433 -35.53491 -34.19543 -31.85505 -30.35671 -29.20043 -27.38917 -24.34798 -23.59400 -23.20874 -21.66278 -21.19720 -19.76480 -18.81706 -17.29080 -16.61774 -16.45483 -16.11657 -15.73351 -15.50247 -15.04032 -14.95835 -14.64082 -14.40589 -14.19880 -13.83461 -13.54911 -13.04345 -12.75190 -12.58370 -12.40787 -12.35003 -12.15557 -12.08990 -11.71903 -11.16603 -11.15336 -10.83071 -10.78238 -9.76416 -9.51158 -8.84819 -8.46668 -6.14831 0.61213 0.72026 1.34905 1.44395 1.52626 2.18231 2.81562 2.91920 3.16352 3.52411 3.65911 3.87249 4.00635 4.08623 4.10580 4.15784 4.23249 4.38770 4.51677 4.59913 4.71298 4.80412 4.82130 5.00807 5.03407 5.07133 5.09411 5.20264 5.28128 5.31152 5.41632 5.58896 5.72933 5.83581 6.03761 6.23156 6.37946 6.75377 6.98099 7.79769 8.76822 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.044491 B = 0.004128 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.184053 B = 6782.002467 C = 7019.875538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.110 3.890 11 C -0.241 4.241 12 C -0.067 4.067 13 C -0.147 4.147 14 C 0.158 3.842 15 H 0.088 0.912 16 N -0.842 5.842 17 C -0.113 4.113 18 C -0.155 4.155 19 C -0.176 4.176 20 C -0.186 4.186 21 C -0.054 4.054 22 C -0.205 4.205 23 H 0.272 0.728 24 H 0.118 0.882 25 H 0.140 0.860 26 H 0.351 0.649 27 H 0.341 0.659 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.143 0.857 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.891 -16.801 4.267 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.060 3.940 11 C -0.261 4.261 12 C -0.086 4.086 13 C -0.148 4.148 14 C 0.047 3.953 15 H 0.106 0.894 16 N -0.374 5.374 17 C -0.152 4.152 18 C -0.173 4.173 19 C -0.213 4.213 20 C -0.223 4.223 21 C -0.073 4.073 22 C -0.225 4.225 23 H 0.081 0.919 24 H 0.136 0.864 25 H 0.157 0.843 26 H 0.165 0.835 27 H 0.155 0.845 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.130 0.870 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.160 0.840 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.572 -16.154 3.620 20.198 hybrid contribution -0.202 0.619 0.908 1.117 sum 11.370 -15.535 4.527 19.776 Atomic orbital electron populations 1.70190 1.08041 1.28768 1.49042 1.26598 0.96863 1.02745 0.95888 0.84585 0.77804 0.74527 0.79271 1.18791 1.19529 1.17643 1.21825 0.92511 0.81513 1.53193 0.88178 1.83938 1.35945 1.12593 1.81660 1.19935 0.91644 0.87950 0.94505 1.21233 0.93072 1.00021 1.11737 1.20938 0.99860 0.91015 0.96772 1.19676 0.93564 0.94693 1.06891 1.20004 0.96572 0.88009 0.90742 0.89412 1.58900 1.07159 1.11933 1.59371 1.21942 0.98872 0.96845 0.97574 1.22300 1.01908 0.94727 0.98362 1.23118 0.99162 0.95211 1.03795 1.23022 1.01473 1.04363 0.93425 1.20693 0.93481 0.96429 0.96665 1.20457 0.99867 0.90706 1.11430 0.91856 0.86431 0.84253 0.83485 0.84464 0.92127 0.92112 0.87036 0.89068 0.87633 0.87942 0.89454 0.83977 0.87084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.50 13.67 21.61 0.30 -57.20 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 3 Si 1.02 43.47 29.55 68.60 2.03 45.50 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 6 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.41 -24.65 9.49 67.92 0.64 -24.01 16 8 H 0.10 5.47 5.20 -2.91 -0.02 5.46 16 9 O -0.23 -14.48 9.76 -22.72 -0.22 -14.70 16 10 C 0.11 5.62 6.65 22.58 0.15 5.77 16 11 C -0.24 -10.79 9.17 22.39 0.21 -10.59 16 12 C -0.07 -2.38 9.66 22.25 0.21 -2.16 16 13 C -0.15 -4.62 4.96 -19.84 -0.10 -4.72 16 14 C 0.16 3.55 3.00 44.17 0.13 3.68 16 15 H 0.09 1.89 8.00 -2.39 -0.02 1.87 16 16 N -0.84 -16.71 9.02 -171.82 -1.55 -18.26 16 17 C -0.11 -2.22 5.12 30.59 0.16 -2.06 16 18 C -0.15 -2.34 4.92 -10.79 -0.05 -2.39 16 19 C -0.18 -2.30 10.18 30.62 0.31 -1.99 16 20 C -0.19 -2.68 10.25 30.62 0.31 -2.37 16 21 C -0.05 -1.85 9.29 22.25 0.21 -1.65 16 22 C -0.21 -8.99 9.99 22.39 0.22 -8.77 16 23 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 24 H 0.12 5.34 5.64 -2.91 -0.02 5.33 16 25 H 0.14 3.95 8.03 -2.91 -0.02 3.92 16 26 H 0.35 5.37 8.30 -89.70 -0.74 4.62 16 27 H 0.34 6.37 7.34 -89.69 -0.66 5.71 16 28 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.06 1.24 7.88 -2.39 -0.02 1.22 16 30 H 0.11 1.54 8.08 -2.39 -0.02 1.52 16 31 H 0.09 1.24 8.03 -2.39 -0.02 1.22 16 32 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.36 8.14 -2.38 -0.02 1.35 16 35 H 0.14 3.81 6.66 -2.91 -0.02 3.79 16 36 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -70.34 303.57 3.12 -67.22 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -0.30 Total: 29.59 kcal Atomic # 6 Polarization: -55.03 SS G_CDS: 2.87 Total: -52.15 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -1.25 Total: -75.46 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.22 Total: -14.70 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -70.34 3.12 -67.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309569416.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.704 kcal (2) G-P(sol) polarization free energy of solvation -70.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds