Wall clock time and date at job start Mon Mar 30 2020 06:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86797 * 120.00099 * 2 1 4 4 H 1.48500 * 109.46918 * 269.99841 * 3 2 1 5 5 H 1.48498 * 109.47180 * 29.99718 * 3 2 1 6 6 H 1.48499 * 109.47368 * 149.99860 * 3 2 1 7 7 C 1.38656 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99936 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99822 * 359.97438 * 7 2 1 10 10 C 1.35760 * 116.99715 * 185.05388 * 9 7 2 11 11 C 1.38878 * 120.06868 * 354.46842 * 10 9 7 12 12 C 1.38095 * 119.92879 * 179.97438 * 11 10 9 13 13 C 1.38297 * 120.07013 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93318 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.46862 * 19.99681 * 14 13 12 16 16 N 1.46896 * 109.47368 * 139.99687 * 14 13 12 17 17 C 1.53004 * 109.47198 * 259.99929 * 14 13 12 18 18 C 1.53001 * 109.46888 * 174.99958 * 17 14 13 19 19 C 1.52996 * 117.49426 * 243.61801 * 18 17 14 20 20 C 1.52998 * 117.49344 * 174.99905 * 18 17 14 21 21 C 1.38303 * 120.13868 * 359.97438 * 13 12 11 22 22 C 1.38096 * 120.06920 * 0.02562 * 21 13 12 23 23 H 0.96999 * 120.00238 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.03614 * 359.95418 * 11 10 9 25 25 H 1.08000 * 119.96560 * 179.72015 * 12 11 10 26 26 H 1.00901 * 110.99944 * 296.04897 * 16 14 13 27 27 H 1.00899 * 111.00227 * 60.00196 * 16 14 13 28 28 H 1.09002 * 109.46596 * 294.99675 * 17 14 13 29 29 H 1.08995 * 109.46797 * 54.99588 * 17 14 13 30 30 H 1.08996 * 115.55331 * 29.32981 * 18 17 14 31 31 H 1.08999 * 117.50387 * 0.02562 * 19 18 17 32 32 H 1.09003 * 117.49757 * 145.02192 * 19 18 17 33 33 H 1.09005 * 117.50023 * 214.97437 * 20 18 17 34 34 H 1.09007 * 117.50202 * 359.97438 * 20 18 17 35 35 H 1.08002 * 119.96458 * 180.02562 * 21 13 12 36 36 H 1.08001 * 120.03845 * 180.02562 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 3.0887 -1.2008 0.0010 9 8 1.3346 -2.3684 0.0016 10 6 2.0700 -3.5046 0.1086 11 6 3.4571 -3.4395 0.0951 12 6 4.2023 -4.5969 0.2047 13 6 3.5686 -5.8200 0.3273 14 6 4.3849 -7.0813 0.4461 15 1 5.3953 -6.8310 0.7696 16 7 3.7630 -7.9761 1.4312 17 6 4.4433 -7.7810 -0.9133 18 6 5.3729 -8.9929 -0.8235 19 6 6.6390 -8.9770 -1.6823 20 6 5.4746 -9.8976 -2.0531 21 6 2.1874 -5.8882 0.3411 22 6 1.4365 -4.7344 0.2319 23 1 -0.4850 0.8400 -0.0004 24 1 3.9526 -2.4847 -0.0014 25 1 5.2811 -4.5474 0.1897 26 1 3.7709 -7.5623 2.3514 27 1 2.8248 -8.2230 1.1538 28 1 3.4432 -8.1103 -1.1956 29 1 4.8225 -7.0868 -1.6632 30 1 5.4347 -9.4665 0.1562 31 1 6.8100 -8.1031 -2.3108 32 1 7.5343 -9.4401 -1.2674 33 1 5.6039 -10.9664 -1.8823 34 1 4.8790 -9.6297 -2.9259 35 1 1.6954 -6.8448 0.4374 36 1 0.3579 -4.7881 0.2431 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309569417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:05 Heat of formation + Delta-G solvation = 10.137330 kcal Electronic energy + Delta-G solvation = -17100.424627 eV Core-core repulsion = 14357.465684 eV Total energy + Delta-G solvation = -2742.958943 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.32010 -37.98307 -36.71130 -34.29692 -32.25929 -30.33159 -28.93652 -28.09392 -25.47602 -22.97473 -22.35307 -21.98789 -20.38739 -19.92148 -18.01026 -17.03201 -16.18927 -15.30866 -15.07743 -14.68376 -14.46772 -13.91315 -13.85707 -13.65982 -13.49281 -12.80197 -12.48820 -12.12456 -11.81747 -11.63691 -11.47237 -11.36300 -11.21027 -10.96812 -10.80797 -10.63020 -10.46441 -10.11112 -9.82213 -9.38125 -8.87377 -8.58850 -8.24637 -7.21207 -6.49109 -4.08182 2.14359 2.24473 3.09907 3.10971 3.15824 3.83444 3.93235 4.44880 4.72390 4.80573 4.97552 5.00271 5.05076 5.21070 5.33624 5.43605 5.52139 5.59877 5.65985 5.75655 5.81220 5.98356 6.01183 6.08328 6.12995 6.19003 6.40663 6.47464 6.63645 6.84140 6.98754 7.14922 7.21740 7.38014 7.42221 7.60165 7.76619 7.95690 8.96443 9.65923 10.68845 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.041730 B = 0.004181 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.818641 B = 6695.145104 C = 7000.311350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.153 3.847 11 C -0.232 4.232 12 C -0.063 4.063 13 C -0.219 4.219 14 C 0.150 3.850 15 H 0.078 0.922 16 N -0.840 5.840 17 C -0.076 4.076 18 C -0.135 4.135 19 C -0.188 4.188 20 C -0.189 4.189 21 C -0.072 4.072 22 C -0.191 4.191 23 H 0.270 0.730 24 H 0.126 0.874 25 H 0.106 0.894 26 H 0.340 0.660 27 H 0.336 0.664 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.930 -13.009 -0.510 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.099 3.901 11 C -0.252 4.252 12 C -0.082 4.082 13 C -0.222 4.222 14 C 0.038 3.962 15 H 0.096 0.904 16 N -0.369 5.369 17 C -0.114 4.114 18 C -0.153 4.153 19 C -0.225 4.225 20 C -0.226 4.226 21 C -0.091 4.091 22 C -0.210 4.210 23 H 0.080 0.920 24 H 0.144 0.856 25 H 0.124 0.876 26 H 0.152 0.848 27 H 0.149 0.851 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.085 -13.306 -0.714 16.127 hybrid contribution -0.225 1.705 0.027 1.720 sum 8.860 -11.601 -0.686 14.613 Atomic orbital electron populations 1.70034 1.05983 1.27742 1.45925 1.25297 0.95850 0.98863 0.96477 0.85707 0.78932 0.80023 0.78755 1.19835 1.20200 1.19173 1.21333 0.91807 0.80816 1.52984 0.89065 1.83979 1.34367 1.11483 1.78249 1.19398 0.90309 0.88067 0.92277 1.21175 0.93822 0.98969 1.11221 1.20615 0.98270 0.91815 0.97498 1.20151 0.94114 0.95389 1.12529 1.20088 0.96711 0.87587 0.91790 0.90398 1.59108 1.25802 1.46476 1.05475 1.21219 0.98806 0.94733 0.96595 1.22365 0.98132 0.98950 0.95855 1.23029 0.92805 1.02252 1.04449 1.22937 1.02760 0.96928 0.99957 1.20360 0.93005 0.96520 0.99196 1.20185 0.99504 0.90407 1.10897 0.91966 0.85593 0.87568 0.84801 0.85067 0.91811 0.91634 0.86770 0.89095 0.89339 0.89302 0.89196 0.87471 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.22 13.67 55.48 0.76 -24.46 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 8 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 9 O -0.18 -5.06 9.76 0.02 0.00 -5.06 16 10 C 0.15 3.69 6.65 -39.11 -0.26 3.43 16 11 C -0.23 -5.01 9.17 -39.40 -0.36 -5.37 16 12 C -0.06 -1.14 9.66 -39.61 -0.38 -1.52 16 13 C -0.22 -3.57 4.95 -104.58 -0.52 -4.09 16 14 C 0.15 1.96 2.97 -68.86 -0.20 1.75 16 15 H 0.08 1.03 8.00 -51.93 -0.42 0.61 16 16 N -0.84 -9.76 8.49 -5.65 -0.05 -9.81 16 17 C -0.08 -0.93 5.12 -26.73 -0.14 -1.07 16 18 C -0.13 -1.49 5.61 -90.62 -0.51 -2.00 16 19 C -0.19 -1.90 10.18 -26.73 -0.27 -2.18 16 20 C -0.19 -1.89 10.25 -26.73 -0.27 -2.16 16 21 C -0.07 -1.24 9.29 -39.61 -0.37 -1.60 16 22 C -0.19 -3.98 9.99 -39.40 -0.39 -4.37 16 23 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16 25 H 0.11 1.65 8.03 -52.49 -0.42 1.22 16 26 H 0.34 3.84 9.06 -39.29 -0.36 3.48 16 27 H 0.34 3.74 7.34 -39.29 -0.29 3.45 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 30 H 0.11 1.32 7.69 -51.93 -0.40 0.92 16 31 H 0.09 0.92 8.03 -51.93 -0.42 0.50 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.11 1.52 6.66 -52.49 -0.35 1.17 16 36 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 304.07 15.07 4.58 4.58 Total: -1.00 -29.38 304.07 -8.09 -37.47 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -4.87 Total: 10.76 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: -3.48 Total: -28.87 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.71 Total: -34.27 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: 0.00 Total: -5.06 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.38 -8.09 -37.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309569417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.602 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds