Wall clock time and date at job start Mon Mar 30 2020 06:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86797 * 120.00099 * 2 1 4 4 H 1.48500 * 109.46918 * 269.99841 * 3 2 1 5 5 H 1.48498 * 109.47180 * 29.99718 * 3 2 1 6 6 H 1.48499 * 109.47368 * 149.99860 * 3 2 1 7 7 C 1.38656 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99936 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99822 * 359.97438 * 7 2 1 10 10 C 1.35760 * 116.99715 * 185.05388 * 9 7 2 11 11 C 1.38878 * 120.06868 * 354.46842 * 10 9 7 12 12 C 1.38095 * 119.92879 * 179.97438 * 11 10 9 13 13 C 1.38297 * 120.07013 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93318 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.46862 * 19.99681 * 14 13 12 16 16 N 1.46896 * 109.47368 * 139.99687 * 14 13 12 17 17 C 1.53004 * 109.47198 * 259.99929 * 14 13 12 18 18 C 1.53001 * 109.46888 * 174.99958 * 17 14 13 19 19 C 1.52996 * 117.49426 * 243.61801 * 18 17 14 20 20 C 1.52998 * 117.49344 * 174.99905 * 18 17 14 21 21 C 1.38303 * 120.13868 * 359.97438 * 13 12 11 22 22 C 1.38096 * 120.06920 * 0.02562 * 21 13 12 23 23 H 0.96999 * 120.00238 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.03614 * 359.95418 * 11 10 9 25 25 H 1.08000 * 119.96560 * 179.72015 * 12 11 10 26 26 H 1.00901 * 110.99944 * 296.04897 * 16 14 13 27 27 H 1.00899 * 111.00227 * 60.00196 * 16 14 13 28 28 H 1.09002 * 109.46596 * 294.99675 * 17 14 13 29 29 H 1.08995 * 109.46797 * 54.99588 * 17 14 13 30 30 H 1.08996 * 115.55331 * 29.32981 * 18 17 14 31 31 H 1.08999 * 117.50387 * 0.02562 * 19 18 17 32 32 H 1.09003 * 117.49757 * 145.02192 * 19 18 17 33 33 H 1.09005 * 117.50023 * 214.97437 * 20 18 17 34 34 H 1.09007 * 117.50202 * 359.97438 * 20 18 17 35 35 H 1.08002 * 119.96458 * 180.02562 * 21 13 12 36 36 H 1.08001 * 120.03845 * 180.02562 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 3.0887 -1.2008 0.0010 9 8 1.3346 -2.3684 0.0016 10 6 2.0700 -3.5046 0.1086 11 6 3.4571 -3.4395 0.0951 12 6 4.2023 -4.5969 0.2047 13 6 3.5686 -5.8200 0.3273 14 6 4.3849 -7.0813 0.4461 15 1 5.3953 -6.8310 0.7696 16 7 3.7630 -7.9761 1.4312 17 6 4.4433 -7.7810 -0.9133 18 6 5.3729 -8.9929 -0.8235 19 6 6.6390 -8.9770 -1.6823 20 6 5.4746 -9.8976 -2.0531 21 6 2.1874 -5.8882 0.3411 22 6 1.4365 -4.7344 0.2319 23 1 -0.4850 0.8400 -0.0004 24 1 3.9526 -2.4847 -0.0014 25 1 5.2811 -4.5474 0.1897 26 1 3.7709 -7.5623 2.3514 27 1 2.8248 -8.2230 1.1538 28 1 3.4432 -8.1103 -1.1956 29 1 4.8225 -7.0868 -1.6632 30 1 5.4347 -9.4665 0.1562 31 1 6.8100 -8.1031 -2.3108 32 1 7.5343 -9.4401 -1.2674 33 1 5.6039 -10.9664 -1.8823 34 1 4.8790 -9.6297 -2.9259 35 1 1.6954 -6.8448 0.4374 36 1 0.3579 -4.7881 0.2431 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309569417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:05 Heat of formation + Delta-G solvation = -8.032259 kcal Electronic energy + Delta-G solvation = -17101.212519 eV Core-core repulsion = 14357.465684 eV Total energy + Delta-G solvation = -2743.746835 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.93345 -39.28786 -37.98928 -35.56795 -34.21465 -31.91087 -30.21596 -29.35458 -27.41740 -24.32504 -23.57290 -23.13112 -21.68185 -21.01036 -19.80479 -18.86561 -17.20405 -16.70701 -16.40302 -16.15474 -15.83625 -15.54964 -15.32168 -14.99839 -14.71726 -14.42467 -14.05190 -13.58413 -13.31799 -12.92835 -12.76695 -12.70040 -12.35899 -12.28345 -12.15350 -12.09996 -11.92552 -11.20582 -11.02230 -10.80001 -10.65730 -9.84333 -9.63844 -8.89988 -8.49693 -6.18169 0.54549 0.64902 1.33478 1.42603 1.51072 2.15841 2.77880 3.02789 3.12597 3.47352 3.74534 3.83316 4.06273 4.09696 4.15532 4.17699 4.24797 4.48197 4.53645 4.55318 4.71971 4.86014 4.94907 5.00875 5.04844 5.10213 5.14336 5.20746 5.28974 5.34720 5.54099 5.59857 5.68812 5.72686 6.00014 6.18324 6.32347 6.66201 6.94969 7.75438 8.73562 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.041730 B = 0.004181 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.818641 B = 6695.145104 C = 7000.311350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.253 1.253 7 C -0.416 4.416 8 H 0.101 0.899 9 O -0.233 6.233 10 C 0.111 3.889 11 C -0.242 4.242 12 C -0.064 4.064 13 C -0.190 4.190 14 C 0.157 3.843 15 H 0.087 0.913 16 N -0.833 5.833 17 C -0.073 4.073 18 C -0.140 4.140 19 C -0.187 4.187 20 C -0.186 4.186 21 C -0.063 4.063 22 C -0.203 4.203 23 H 0.273 0.727 24 H 0.117 0.883 25 H 0.139 0.861 26 H 0.345 0.655 27 H 0.342 0.658 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.145 0.855 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.395 -15.080 -0.303 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.492 4.492 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.061 3.939 11 C -0.261 4.261 12 C -0.082 4.082 13 C -0.192 4.192 14 C 0.045 3.955 15 H 0.105 0.895 16 N -0.362 5.362 17 C -0.110 4.110 18 C -0.158 4.158 19 C -0.224 4.224 20 C -0.223 4.223 21 C -0.081 4.081 22 C -0.222 4.222 23 H 0.082 0.918 24 H 0.135 0.865 25 H 0.157 0.843 26 H 0.158 0.842 27 H 0.156 0.844 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.162 0.838 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.579 -15.443 -0.500 19.309 hybrid contribution -0.869 1.954 -0.017 2.139 sum 10.710 -13.489 -0.517 17.232 Atomic orbital electron populations 1.70178 1.08043 1.28855 1.48807 1.26597 0.96857 1.02753 0.95793 0.84587 0.77811 0.74521 0.79300 1.18754 1.19509 1.17660 1.21821 0.92499 0.81476 1.53359 0.88173 1.83942 1.35972 1.12627 1.81458 1.19960 0.91641 0.88001 0.94343 1.21276 0.93106 1.00119 1.11598 1.20990 0.99841 0.91059 0.96354 1.20726 0.94160 0.96469 1.07883 1.20105 0.96484 0.85991 0.92875 0.89509 1.59081 1.26232 1.45512 1.05336 1.21148 0.99167 0.95138 0.95583 1.22230 0.98582 0.98722 0.96233 1.23102 0.93005 1.02328 1.03975 1.23010 1.02487 0.97522 0.99274 1.20738 0.93419 0.96666 0.97266 1.20451 0.99896 0.90695 1.11167 0.91789 0.86523 0.84334 0.84218 0.84408 0.91994 0.92297 0.86892 0.89231 0.88271 0.88181 0.89268 0.83753 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.76 13.67 21.61 0.30 -56.47 16 2 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 3 Si 1.02 42.91 29.55 68.60 2.03 44.94 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 7 C -0.42 -24.38 9.49 67.92 0.64 -23.73 16 8 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 9 O -0.23 -14.16 9.76 -22.86 -0.22 -14.38 16 10 C 0.11 5.53 6.65 22.58 0.15 5.68 16 11 C -0.24 -10.51 9.17 22.39 0.21 -10.31 16 12 C -0.06 -2.16 9.66 22.25 0.21 -1.95 16 13 C -0.19 -5.60 4.95 -19.83 -0.10 -5.70 16 14 C 0.16 3.49 2.97 44.17 0.13 3.62 16 15 H 0.09 1.89 8.00 -2.39 -0.02 1.87 16 16 N -0.83 -15.93 8.49 -171.80 -1.46 -17.39 16 17 C -0.07 -1.53 5.12 30.60 0.16 -1.38 16 18 C -0.14 -2.59 5.61 -10.80 -0.06 -2.65 16 19 C -0.19 -3.18 10.18 30.59 0.31 -2.87 16 20 C -0.19 -3.13 10.25 30.59 0.31 -2.82 16 21 C -0.06 -2.00 9.29 22.25 0.21 -1.80 16 22 C -0.20 -8.55 9.99 22.39 0.22 -8.33 16 23 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 24 H 0.12 5.20 5.64 -2.91 -0.02 5.18 16 25 H 0.14 3.80 8.03 -2.91 -0.02 3.77 16 26 H 0.35 6.39 9.06 -89.69 -0.81 5.58 16 27 H 0.34 6.13 7.34 -89.69 -0.66 5.47 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 1.34 7.87 -2.39 -0.02 1.32 16 30 H 0.11 2.18 7.69 -2.39 -0.02 2.16 16 31 H 0.09 1.55 8.03 -2.39 -0.02 1.53 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.14 3.55 6.66 -2.91 -0.02 3.53 16 36 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -67.90 304.07 3.13 -64.76 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: -0.37 Total: 31.59 kcal Atomic # 6 Polarization: -55.91 SS G_CDS: 2.86 Total: -53.05 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -1.16 Total: -73.86 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.22 Total: -14.38 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -67.90 3.13 -64.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309569417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.729 kcal (2) G-P(sol) polarization free energy of solvation -67.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds