Wall clock time and date at job start Mon Mar 30 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35973 * 117.00078 * 2 1 4 4 C 1.39192 * 119.92396 * 0.02562 * 3 2 1 5 5 C 1.37778 * 120.64062 * 179.97438 * 4 3 2 6 6 C 1.38921 * 120.03495 * 0.23789 * 5 4 3 7 7 O 1.34923 * 133.34193 * 179.73843 * 6 5 4 8 8 C 1.34426 * 110.88838 * 179.97438 * 7 6 5 9 9 C 1.50700 * 124.92324 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.47292 * 269.97963 * 9 8 7 11 11 C 1.36931 * 120.00056 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00271 * 359.97438 * 11 10 9 13 13 C 1.38819 * 119.99884 * 179.97438 * 11 10 9 14 14 N 1.31618 * 120.00056 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00010 * 359.97438 * 13 11 10 16 16 H 1.48508 * 109.46896 * 90.00030 * 15 13 11 17 17 H 1.48493 * 109.47245 * 209.99981 * 15 13 11 18 18 H 1.48498 * 109.46994 * 330.00503 * 15 13 11 19 19 C 1.34004 * 110.15195 * 359.47002 * 8 7 6 20 20 C 1.40456 * 119.40953 * 359.49694 * 6 5 4 21 21 C 1.38168 * 119.92213 * 179.97438 * 3 2 1 22 22 H 1.08997 * 109.47538 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47023 * 299.99665 * 1 2 3 24 24 H 1.08998 * 109.47374 * 59.99431 * 1 2 3 25 25 H 1.07999 * 119.67650 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.97971 * 179.97438 * 5 4 3 27 27 H 1.09007 * 109.46880 * 29.97323 * 9 8 7 28 28 H 1.08995 * 109.47462 * 149.97639 * 9 8 7 29 29 H 0.97001 * 119.99932 * 359.97438 * 10 9 8 30 30 H 0.96995 * 120.00072 * 179.97438 * 14 13 11 31 31 H 1.08004 * 126.89809 * 179.90116 * 19 8 7 32 32 H 1.08002 * 120.22570 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2867 2.3779 0.0005 5 6 1.8968 3.6132 0.0011 6 6 3.2830 3.7041 -0.0039 7 8 4.1429 4.7438 -0.0092 8 6 5.4161 4.3128 -0.0121 9 6 6.6295 5.2065 -0.0176 10 7 7.0189 5.4928 -1.4006 11 6 8.1025 6.2902 -1.6557 12 1 8.6698 6.7084 -0.8374 13 6 8.4718 6.5610 -2.9662 14 7 9.5130 7.3279 -3.2114 15 14 7.4910 5.8371 -4.3816 16 1 6.4006 6.7726 -4.7577 17 1 8.3862 5.6261 -5.5473 18 1 6.9062 4.5373 -3.9648 19 6 5.4501 2.9733 0.0029 20 6 4.0513 2.5283 0.0013 21 6 3.4262 1.2819 0.0005 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 0.2086 2.3139 0.0005 26 1 1.2970 4.5114 0.0011 27 1 6.3956 6.1399 0.4946 28 1 7.4513 4.7068 0.4952 29 1 6.5096 5.1169 -2.1356 30 1 9.7713 7.5168 -4.1270 31 1 6.3300 2.3469 0.0031 32 1 4.0167 0.3777 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309934434.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:35 Heat of formation + Delta-G solvation = -10.788513 kcal Electronic energy + Delta-G solvation = -16854.062196 eV Core-core repulsion = 13974.362745 eV Total energy + Delta-G solvation = -2879.699450 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.47203 -40.63637 -37.62033 -36.87616 -34.22936 -33.31290 -31.27658 -30.66972 -28.00974 -27.52951 -24.58835 -23.61754 -22.68124 -22.02733 -20.01631 -18.99824 -18.51251 -17.38739 -17.20703 -16.64809 -16.43131 -16.37559 -15.52991 -15.23210 -14.92802 -14.52305 -14.29974 -14.08322 -13.84804 -13.73780 -13.31244 -13.16632 -12.92219 -12.63698 -12.19793 -11.86523 -11.81417 -11.75469 -11.20703 -11.09612 -9.43389 -9.31805 -9.02860 -8.07731 -5.43960 -0.22131 0.32077 1.24310 1.36328 1.37295 1.44959 1.68139 2.29494 2.43713 2.60738 3.23847 3.39730 3.64400 3.69559 3.83359 4.05187 4.14525 4.25003 4.38262 4.45090 4.49590 4.61702 4.71020 4.76238 4.85488 5.01097 5.14209 5.17421 5.37610 5.43364 5.68028 6.11482 6.14640 6.40150 6.97567 7.70085 7.89589 9.12813 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.039285 B = 0.004673 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.567214 B = 5991.012798 C = 6219.899353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.109 3.891 4 C -0.166 4.166 5 C -0.069 4.069 6 C -0.009 4.009 7 O -0.206 6.206 8 C 0.031 3.969 9 C 0.226 3.774 10 N -0.756 5.756 11 C -0.240 4.240 12 H 0.070 0.930 13 C -0.053 4.053 14 N -0.976 5.976 15 Si 0.948 3.052 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.260 1.260 19 C -0.201 4.201 20 C -0.108 4.108 21 C -0.126 4.126 22 H 0.119 0.881 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.177 0.823 26 H 0.158 0.842 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.366 0.634 30 H 0.261 0.739 31 H 0.175 0.825 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.491 -15.116 7.853 27.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.063 3.937 4 C -0.184 4.184 5 C -0.087 4.087 6 C -0.055 4.055 7 O -0.108 6.108 8 C -0.016 4.016 9 C 0.101 3.899 10 N -0.402 5.402 11 C -0.370 4.370 12 H 0.088 0.912 13 C -0.245 4.245 14 N -0.626 5.626 15 Si 0.775 3.225 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.185 1.185 19 C -0.221 4.221 20 C -0.109 4.109 21 C -0.145 4.145 22 H 0.137 0.863 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.194 0.806 26 H 0.176 0.824 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.199 0.801 30 H 0.070 0.930 31 H 0.192 0.808 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -21.321 -14.897 7.925 27.190 hybrid contribution -0.083 0.030 -1.022 1.026 sum -21.404 -14.867 6.903 26.959 Atomic orbital electron populations 1.23416 0.76085 1.05820 1.02610 1.86075 1.23722 1.25833 1.88906 1.18773 0.91600 0.85261 0.98044 1.21353 1.01755 0.89727 1.05590 1.20074 0.88039 0.99843 1.00756 1.20094 0.93014 0.84965 1.07465 1.83971 1.15238 1.34834 1.76798 1.22670 0.83297 0.94466 1.01213 1.19362 0.88020 0.95572 0.86953 1.42700 1.34462 1.60460 1.02615 1.19025 1.03635 1.21170 0.93200 0.91171 1.25398 0.99006 1.00448 0.99667 1.69847 1.29627 1.43039 1.20071 0.85516 0.78278 0.79088 0.79586 1.20547 1.21470 1.18465 1.22514 0.96416 0.93655 1.09491 1.19818 0.93257 0.93748 1.04034 1.19739 0.92242 0.96342 1.06144 0.86284 0.91170 0.91441 0.80629 0.82411 0.93076 0.90004 0.80139 0.93021 0.80785 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -6.34 10.49 -93.25 -0.98 -7.32 16 3 C 0.11 2.42 6.68 22.48 0.15 2.57 16 4 C -0.17 -3.11 9.01 22.39 0.20 -2.91 16 5 C -0.07 -1.59 10.05 22.32 0.22 -1.36 16 6 C -0.01 -0.27 7.41 22.97 0.17 -0.10 16 7 O -0.21 -7.44 10.59 -9.87 -0.10 -7.55 16 8 C 0.03 1.13 6.60 24.72 0.16 1.29 16 9 C 0.23 8.86 6.76 85.63 0.58 9.44 16 10 N -0.76 -36.53 5.40 -347.17 -1.87 -38.40 16 11 C -0.24 -13.74 10.47 84.04 0.88 -12.86 16 12 H 0.07 4.28 8.06 -2.91 -0.02 4.25 16 13 C -0.05 -3.13 5.50 84.86 0.47 -2.66 16 14 N -0.98 -62.33 13.97 21.65 0.30 -62.03 16 15 Si 0.95 46.44 27.74 68.60 1.90 48.34 16 16 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 17 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 18 H -0.26 -11.88 6.52 99.48 0.65 -11.23 16 19 C -0.20 -6.48 11.01 23.54 0.26 -6.22 16 20 C -0.11 -3.31 6.39 -20.21 -0.13 -3.44 16 21 C -0.13 -3.31 10.03 22.54 0.23 -3.08 16 22 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.07 0.46 7.65 -2.39 -0.02 0.44 16 24 H 0.07 0.48 7.65 -2.39 -0.02 0.47 16 25 H 0.18 1.84 6.26 -2.91 -0.02 1.83 16 26 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 27 H 0.05 1.99 8.14 -2.38 -0.02 1.98 16 28 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 29 H 0.37 17.50 5.52 -92.71 -0.51 16.99 16 30 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 31 H 0.17 4.88 8.06 -2.91 -0.02 4.86 16 32 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -70.98 280.70 4.12 -66.85 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.57 Total: 18.19 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 4.30 Total: -18.09 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -1.57 Total: -100.43 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -1.08 Total: -14.86 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.90 Total: 48.34 kcal Total: -70.98 4.12 -66.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309934434.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.065 kcal (2) G-P(sol) polarization free energy of solvation -70.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds