Wall clock time and date at job start Mon Mar 30 2020 05:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.39133 * 120.00152 * 275.00048 * 13 3 2 15 15 N 1.32421 * 120.36824 * 359.72119 * 14 13 3 16 16 N 1.28224 * 123.01294 * 179.80641 * 15 14 13 17 17 C 1.31738 * 122.70306 * 0.44914 * 16 15 14 18 18 C 1.39610 * 119.18959 * 359.80230 * 17 16 15 19 19 C 1.46238 * 136.08525 * 179.97438 * 18 17 16 20 20 C 1.34239 * 106.15822 * 179.97438 * 19 18 17 21 21 O 1.34463 * 110.11270 * 0.02562 * 20 19 18 22 22 C 1.34302 * 110.88684 * 359.97438 * 21 20 19 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 29 29 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 30 30 H 1.08003 * 120.40125 * 179.77509 * 17 16 15 31 31 H 1.08003 * 126.91838 * 0.04542 * 19 18 17 32 32 H 1.07998 * 124.94006 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.3958 2.6827 1.3705 15 7 -0.4536 2.6568 0.3549 16 7 -1.6245 3.1765 0.4100 17 6 -2.0811 3.7903 1.4825 18 6 -1.2671 3.8816 2.6131 19 6 -1.3858 4.4551 3.9531 20 6 -0.2239 4.1974 4.5740 21 8 0.5999 3.5233 3.7524 22 6 0.0179 3.3089 2.5611 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0604 -2.9502 29 1 2.2719 2.1232 1.9977 30 1 -3.0727 4.2182 1.4868 31 1 -2.2372 4.9794 4.3613 32 1 0.0149 4.4897 5.5859 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309997978.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:59 Heat of formation + Delta-G solvation = 67.694392 kcal Electronic energy + Delta-G solvation = -17773.254258 eV Core-core repulsion = 14929.250833 eV Total energy + Delta-G solvation = -2844.003425 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.58419 -39.49722 -36.52792 -33.40078 -32.74370 -31.34659 -30.22400 -29.60787 -26.69040 -24.16315 -23.54426 -22.60974 -21.25708 -19.90089 -18.45657 -17.52493 -16.88958 -16.34922 -16.12475 -15.18653 -14.81303 -14.29763 -14.00663 -13.71442 -13.18748 -12.77167 -12.64609 -12.24976 -11.69458 -11.25740 -11.12612 -10.94362 -10.65928 -10.52610 -10.25908 -10.15524 -9.66851 -9.58864 -9.27159 -8.99977 -8.82918 -8.44478 -7.07566 -6.13867 -4.23600 1.07618 1.45687 2.39710 2.65201 3.25154 3.30487 3.31599 3.80862 4.13414 4.33448 4.41586 4.57045 4.89157 5.07652 5.17460 5.29503 5.40989 5.84617 6.03124 6.21380 6.38827 6.41395 6.45947 6.64605 6.89634 7.03021 7.17773 7.36210 7.48290 7.63807 7.81169 7.98060 8.19291 8.45113 8.80803 9.41540 9.51514 10.91334 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.031806 B = 0.006482 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.113217 B = 4318.309150 C = 4847.238318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.274 3.726 4 H 0.058 0.942 5 C -0.538 4.538 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.679 5.679 14 C 0.400 3.600 15 N -0.291 5.291 16 N -0.211 5.211 17 C 0.007 3.993 18 C -0.111 4.111 19 C -0.206 4.206 20 C 0.012 3.988 21 O -0.176 6.176 22 C -0.035 4.035 23 H 0.023 0.977 24 H 0.059 0.941 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.102 0.898 28 H 0.266 0.734 29 H 0.402 0.598 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 6.003 11.773 15.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.076 0.924 5 C -0.577 4.577 6 H 0.078 0.922 7 C -0.134 4.134 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.202 1.202 13 N -0.306 5.306 14 C 0.152 3.848 15 N -0.146 5.146 16 N -0.049 5.049 17 C -0.170 4.170 18 C -0.121 4.121 19 C -0.227 4.227 20 C -0.056 4.056 21 O -0.072 6.072 22 C -0.097 4.097 23 H 0.042 0.958 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.120 0.880 28 H 0.076 0.924 29 H 0.237 0.763 30 H 0.180 0.820 31 H 0.180 0.820 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.091 5.179 9.882 13.220 hybrid contribution 1.267 0.581 1.891 2.349 sum -5.824 5.759 11.774 14.342 Atomic orbital electron populations 1.21847 0.98239 0.98111 1.01108 1.21963 0.92711 0.99638 1.02339 1.18963 0.94329 0.89280 0.80210 0.92381 1.21165 0.90576 1.39455 1.06483 0.92195 1.24851 0.98622 0.94679 0.95292 1.69878 1.35235 1.37301 1.09257 0.86506 0.84783 0.78327 0.77479 1.20189 1.21030 1.20192 1.45629 1.09923 1.55835 1.19170 1.19703 0.90335 0.89367 0.85442 1.73200 0.98728 1.21560 1.21078 1.72442 1.06046 1.04047 1.22323 1.23276 1.01329 1.03348 0.89003 1.20707 0.94567 1.00447 0.96397 1.22381 1.00191 1.07344 0.92754 1.24171 0.89475 0.95941 0.96038 1.83885 1.41771 1.61197 1.20359 1.20277 0.94615 1.07103 0.87714 0.95784 0.92162 0.95212 0.95184 0.87985 0.92400 0.76298 0.81995 0.81984 0.77265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.46 37.16 0.31 -2.70 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.82 2.25 -69.08 -0.16 6.67 16 4 H 0.06 1.64 7.56 -51.93 -0.39 1.24 16 5 C -0.54 -14.22 8.73 -34.44 -0.30 -14.52 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.38 11.29 55.43 0.63 -23.76 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.68 -14.64 5.16 -54.86 -0.28 -14.92 16 14 C 0.40 8.27 6.12 -154.65 -0.95 7.33 16 15 N -0.29 -6.35 7.64 31.29 0.24 -6.11 16 16 N -0.21 -4.15 11.46 30.72 0.35 -3.79 16 17 C 0.01 0.11 11.40 -17.08 -0.19 -0.09 16 18 C -0.11 -1.74 6.49 -105.21 -0.68 -2.42 16 19 C -0.21 -2.31 11.13 -37.78 -0.42 -2.73 16 20 C 0.01 0.12 11.97 29.32 0.35 0.47 16 21 O -0.18 -2.67 10.56 5.27 0.06 -2.61 16 22 C -0.04 -0.63 7.38 -38.07 -0.28 -0.91 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.06 1.40 7.69 -51.93 -0.40 1.00 16 25 H 0.03 0.65 5.60 -51.93 -0.29 0.36 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 28 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 29 H 0.40 7.97 8.56 -40.82 -0.35 7.62 16 30 H 0.16 1.93 8.06 -52.48 -0.42 1.51 16 31 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.21 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 273.52 15.07 4.12 4.12 Total: -1.00 -29.97 273.52 -5.86 -35.83 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -3.40 Total: 6.03 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -2.56 Total: -10.38 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.93 Total: -48.58 kcal Atomic # 8 Polarization: -2.67 SS G_CDS: 0.06 Total: -2.61 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.97 -5.86 -35.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309997978.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.528 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds