Wall clock time and date at job start Mon Mar 30 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 H 1.08993 * 109.46955 * 55.00306 * 3 2 1 5 5 C 1.50698 * 109.47184 * 175.00464 * 3 2 1 6 6 H 1.07993 * 120.00472 * 119.99561 * 5 3 2 7 7 C 1.37884 * 119.99909 * 299.99693 * 5 3 2 8 8 N 1.31522 * 119.99817 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00071 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46971 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46790 * 119.99973 * 9 7 5 12 12 H 1.48501 * 109.47046 * 239.99648 * 9 7 5 13 13 N 1.46500 * 109.46998 * 295.00080 * 3 2 1 14 14 C 1.39138 * 120.00184 * 84.99842 * 13 3 2 15 15 N 1.32422 * 120.36298 * 359.72358 * 14 13 3 16 16 N 1.28221 * 123.00966 * 179.80626 * 15 14 13 17 17 C 1.31743 * 122.70381 * 0.44691 * 16 15 14 18 18 C 1.39614 * 119.18540 * 359.80285 * 17 16 15 19 19 C 1.46244 * 136.08259 * 179.97438 * 18 17 16 20 20 C 1.34228 * 106.15593 * 179.97438 * 19 18 17 21 21 O 1.34469 * 110.11866 * 0.02562 * 20 19 18 22 22 C 1.34306 * 110.88181 * 359.97438 * 21 20 19 23 23 H 1.09006 * 109.46822 * 299.99923 * 1 2 3 24 24 H 1.08997 * 109.47474 * 60.00037 * 1 2 3 25 25 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47145 * 239.99763 * 2 1 3 27 27 H 1.09007 * 109.47521 * 119.99769 * 2 1 3 28 28 H 0.96991 * 120.00052 * 179.97438 * 8 7 5 29 29 H 0.97003 * 119.99995 * 265.00643 * 13 3 2 30 30 H 1.07994 * 120.40812 * 179.77527 * 17 16 15 31 31 H 1.08007 * 126.91748 * 0.04274 * 19 18 17 32 32 H 1.08007 * 124.94329 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0050 0.8813 1.3816 10 1 6.5986 1.5474 0.1946 11 1 6.3990 1.6169 2.6100 12 1 6.4971 -0.5174 1.4629 13 7 1.6524 2.0975 -1.2518 14 6 0.3957 2.6827 -1.3707 15 7 -0.4577 2.6471 -0.3588 16 7 -1.6262 3.1726 -0.4116 17 6 -2.0823 3.7874 -1.4837 18 6 -1.2675 3.8805 -2.6136 19 6 -1.3858 4.4549 -3.9533 20 6 -0.2227 4.2001 -4.5730 21 8 0.6012 3.5262 -3.7513 22 6 0.0183 3.3100 -2.5608 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8293 -0.0617 2.9494 29 1 2.2718 2.1231 -1.9978 30 1 -3.0745 4.2139 -1.4887 31 1 -2.2372 4.9794 -4.3615 32 1 0.0167 4.4937 -5.5844 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309997979.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:02 Heat of formation + Delta-G solvation = 67.808276 kcal Electronic energy + Delta-G solvation = -17774.007369 eV Core-core repulsion = 14930.008882 eV Total energy + Delta-G solvation = -2843.998487 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.58375 -39.49822 -36.52789 -33.40135 -32.74420 -31.34667 -30.22434 -29.60866 -26.69190 -24.16312 -23.54497 -22.61290 -21.25657 -19.90049 -18.45691 -17.52518 -16.89110 -16.34944 -16.12733 -15.19274 -14.81074 -14.29904 -14.00589 -13.70896 -13.18835 -12.77850 -12.64477 -12.25148 -11.69647 -11.26939 -11.11473 -10.95714 -10.64527 -10.51714 -10.25882 -10.16080 -9.66521 -9.58494 -9.27131 -8.98664 -8.82996 -8.45108 -7.07603 -6.14402 -4.23923 1.07585 1.45664 2.39699 2.65229 3.22890 3.30839 3.33494 3.80913 4.13367 4.33203 4.41532 4.57026 4.89145 5.07617 5.17126 5.29474 5.40949 5.84607 6.03054 6.21369 6.38985 6.41484 6.46220 6.64781 6.89640 7.03161 7.17873 7.36380 7.48409 7.64132 7.81070 7.97783 8.19131 8.45048 8.81042 9.41376 9.51428 10.90901 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.031807 B = 0.006484 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.089884 B = 4317.602263 C = 4848.064190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.058 0.942 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.679 5.679 14 C 0.400 3.600 15 N -0.291 5.291 16 N -0.211 5.211 17 C 0.007 3.993 18 C -0.111 4.111 19 C -0.206 4.206 20 C 0.012 3.988 21 O -0.176 6.176 22 C -0.035 4.035 23 H 0.059 0.941 24 H 0.029 0.971 25 H 0.023 0.977 26 H 0.029 0.971 27 H 0.102 0.898 28 H 0.265 0.735 29 H 0.402 0.598 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 6.030 -11.797 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.076 0.924 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.306 5.306 14 C 0.151 3.849 15 N -0.145 5.145 16 N -0.049 5.049 17 C -0.169 4.169 18 C -0.121 4.121 19 C -0.227 4.227 20 C -0.056 4.056 21 O -0.072 6.072 22 C -0.097 4.097 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.048 0.952 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.237 0.763 30 H 0.180 0.820 31 H 0.180 0.820 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.092 5.205 -9.917 13.256 hybrid contribution 1.262 0.577 -1.865 2.325 sum -5.829 5.782 -11.782 14.361 Atomic orbital electron populations 1.21848 0.98220 0.98093 1.01133 1.21964 0.92729 0.99621 1.02336 1.18973 0.94368 0.89295 0.80206 0.92393 1.21238 0.90579 1.39259 1.06438 0.92087 1.24860 0.98638 0.94699 0.95306 1.69898 1.35054 1.37418 1.09311 0.86395 0.84791 0.77804 0.78133 1.19807 1.20805 1.20812 1.45633 1.09924 1.55843 1.19161 1.19703 0.90323 0.89349 0.85494 1.73208 0.98719 1.21371 1.21244 1.72442 1.06169 1.04004 1.22259 1.23276 1.01284 1.03412 0.88975 1.20710 0.94546 1.00462 0.96407 1.22380 1.00167 1.07338 0.92782 1.24171 0.89464 0.95943 0.96045 1.83888 1.41737 1.61190 1.20399 1.20272 0.94578 1.07113 0.87734 0.92164 0.95179 0.95802 0.95185 0.87986 0.92514 0.76292 0.81997 0.81982 0.77266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.45 37.16 0.31 -2.70 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.81 2.25 -69.08 -0.16 6.65 16 4 H 0.06 1.63 7.57 -51.93 -0.39 1.24 16 5 C -0.54 -14.17 8.73 -34.44 -0.30 -14.47 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.83 5.29 -17.81 -0.09 1.73 16 8 N -0.88 -24.38 11.29 55.43 0.63 -23.76 16 9 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.68 -14.63 5.16 -54.85 -0.28 -14.92 16 14 C 0.40 8.26 6.14 -154.65 -0.95 7.32 16 15 N -0.29 -6.34 7.59 31.29 0.24 -6.10 16 16 N -0.21 -4.15 11.46 30.72 0.35 -3.79 16 17 C 0.01 0.11 11.40 -17.08 -0.19 -0.08 16 18 C -0.11 -1.74 6.49 -105.21 -0.68 -2.42 16 19 C -0.21 -2.31 11.13 -37.78 -0.42 -2.73 16 20 C 0.01 0.12 11.97 29.32 0.35 0.47 16 21 O -0.18 -2.67 10.56 5.25 0.06 -2.61 16 22 C -0.04 -0.63 7.38 -38.07 -0.28 -0.91 16 23 H 0.06 1.40 7.69 -51.93 -0.40 1.00 16 24 H 0.03 0.65 5.59 -51.93 -0.29 0.36 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.40 7.97 8.56 -40.82 -0.35 7.62 16 30 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.21 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 273.47 15.07 4.12 4.12 Total: -1.00 -30.01 273.47 -5.87 -35.88 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -3.40 Total: 5.98 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -2.56 Total: -10.37 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.93 Total: -48.57 kcal Atomic # 8 Polarization: -2.67 SS G_CDS: 0.06 Total: -2.61 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.01 -5.87 -35.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309997979.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.684 kcal (2) G-P(sol) polarization free energy of solvation -30.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds