Wall clock time and date at job start Mon Mar 30 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 H 1.08993 * 109.46955 * 55.00306 * 3 2 1 5 5 C 1.50698 * 109.47184 * 175.00464 * 3 2 1 6 6 H 1.07993 * 120.00472 * 119.99561 * 5 3 2 7 7 C 1.37884 * 119.99909 * 299.99693 * 5 3 2 8 8 N 1.31522 * 119.99817 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00071 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46971 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46790 * 119.99973 * 9 7 5 12 12 H 1.48501 * 109.47046 * 239.99648 * 9 7 5 13 13 N 1.46500 * 109.46998 * 295.00080 * 3 2 1 14 14 C 1.39138 * 120.00184 * 84.99842 * 13 3 2 15 15 N 1.32422 * 120.36298 * 359.72358 * 14 13 3 16 16 N 1.28221 * 123.00966 * 179.80626 * 15 14 13 17 17 C 1.31743 * 122.70381 * 0.44691 * 16 15 14 18 18 C 1.39614 * 119.18540 * 359.80285 * 17 16 15 19 19 C 1.46244 * 136.08259 * 179.97438 * 18 17 16 20 20 C 1.34228 * 106.15593 * 179.97438 * 19 18 17 21 21 O 1.34469 * 110.11866 * 0.02562 * 20 19 18 22 22 C 1.34306 * 110.88181 * 359.97438 * 21 20 19 23 23 H 1.09006 * 109.46822 * 299.99923 * 1 2 3 24 24 H 1.08997 * 109.47474 * 60.00037 * 1 2 3 25 25 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47145 * 239.99763 * 2 1 3 27 27 H 1.09007 * 109.47521 * 119.99769 * 2 1 3 28 28 H 0.96991 * 120.00052 * 179.97438 * 8 7 5 29 29 H 0.97003 * 119.99995 * 265.00643 * 13 3 2 30 30 H 1.07994 * 120.40812 * 179.77527 * 17 16 15 31 31 H 1.08007 * 126.91748 * 0.04274 * 19 18 17 32 32 H 1.08007 * 124.94329 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0050 0.8813 1.3816 10 1 6.5986 1.5474 0.1946 11 1 6.3990 1.6169 2.6100 12 1 6.4971 -0.5174 1.4629 13 7 1.6524 2.0975 -1.2518 14 6 0.3957 2.6827 -1.3707 15 7 -0.4577 2.6471 -0.3588 16 7 -1.6262 3.1726 -0.4116 17 6 -2.0823 3.7874 -1.4837 18 6 -1.2675 3.8805 -2.6136 19 6 -1.3858 4.4549 -3.9533 20 6 -0.2227 4.2001 -4.5730 21 8 0.6012 3.5262 -3.7513 22 6 0.0183 3.3100 -2.5608 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8293 -0.0617 2.9494 29 1 2.2718 2.1231 -1.9978 30 1 -3.0745 4.2139 -1.4887 31 1 -2.2372 4.9794 -4.3615 32 1 0.0167 4.4937 -5.5844 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309997979.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:02 Heat of formation + Delta-G solvation = 47.815976 kcal Electronic energy + Delta-G solvation = -17774.874300 eV Core-core repulsion = 14930.008882 eV Total energy + Delta-G solvation = -2844.865418 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.73661 -40.86825 -38.22982 -35.10659 -34.02131 -33.18404 -31.45109 -31.13916 -28.55141 -25.48445 -25.22331 -24.18046 -22.38084 -21.70887 -19.82956 -18.87588 -18.47788 -17.70392 -17.51826 -16.88945 -16.37022 -15.86771 -15.41740 -15.09614 -14.64757 -14.36603 -14.04207 -13.59917 -13.41251 -13.16960 -12.91605 -12.75933 -12.32939 -12.13588 -11.90242 -11.80354 -11.52903 -11.13183 -10.90667 -10.67674 -10.47954 -9.88294 -8.66211 -8.17000 -6.34173 -0.14545 0.15863 1.38858 1.42268 1.43264 1.54723 1.56155 2.24753 2.47105 2.75248 3.12039 3.33415 3.41660 3.70367 3.91081 4.13936 4.50873 4.56354 4.57703 4.71294 4.74196 4.82316 5.06892 5.20764 5.28181 5.35042 5.45550 5.56313 5.63084 5.82976 5.89827 6.08303 6.32921 6.67364 6.88462 7.36051 8.10155 8.88366 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.031807 B = 0.006484 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.089884 B = 4317.602263 C = 4848.064190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.119 4.119 3 C 0.287 3.713 4 H 0.015 0.985 5 C -0.552 4.552 6 H 0.064 0.936 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 0.969 3.031 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.277 1.277 13 N -0.690 5.690 14 C 0.381 3.619 15 N -0.333 5.333 16 N -0.252 5.252 17 C 0.027 3.973 18 C -0.118 4.118 19 C -0.198 4.198 20 C 0.027 3.973 21 O -0.189 6.189 22 C -0.056 4.056 23 H 0.041 0.959 24 H 0.031 0.969 25 H 0.041 0.959 26 H 0.031 0.969 27 H 0.076 0.924 28 H 0.266 0.734 29 H 0.407 0.593 30 H 0.206 0.794 31 H 0.207 0.793 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.937 7.451 -14.749 18.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.159 4.159 3 C 0.184 3.816 4 H 0.032 0.968 5 C -0.591 4.591 6 H 0.082 0.918 7 C -0.181 4.181 8 N -0.548 5.548 9 Si 0.794 3.206 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.202 1.202 13 N -0.320 5.320 14 C 0.132 3.868 15 N -0.185 5.185 16 N -0.088 5.088 17 C -0.150 4.150 18 C -0.128 4.128 19 C -0.218 4.218 20 C -0.040 4.040 21 O -0.086 6.086 22 C -0.118 4.118 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.243 0.757 30 H 0.223 0.777 31 H 0.224 0.776 32 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -7.799 6.644 -12.875 16.454 hybrid contribution 1.291 0.301 -1.142 1.750 sum -6.508 6.945 -14.017 16.943 Atomic orbital electron populations 1.21643 0.96738 0.98817 1.00307 1.21800 0.93950 0.99172 1.00942 1.18465 0.93432 0.89123 0.80570 0.96759 1.21568 0.91581 1.39214 1.06707 0.91807 1.25706 1.03185 0.94276 0.94924 1.70038 1.36901 1.38099 1.09801 0.85349 0.79247 0.77925 0.78110 1.18972 1.20728 1.20209 1.45187 1.11040 1.57617 1.18143 1.19718 0.89781 0.90291 0.86963 1.73079 0.99795 1.22874 1.22729 1.72375 1.05867 1.06179 1.24379 1.23995 1.02554 1.00513 0.87933 1.21228 0.93330 1.00037 0.98247 1.22886 1.01847 1.06939 0.90143 1.25392 0.88424 0.93102 0.97046 1.83907 1.42949 1.61856 1.19858 1.20138 0.95820 1.07709 0.88106 0.93981 0.95012 0.94030 0.94998 0.90611 0.92445 0.75710 0.77746 0.77627 0.71801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.45 71.98 0.61 -4.83 16 2 C -0.12 -6.06 5.45 30.60 0.17 -5.89 16 3 C 0.29 15.10 2.25 44.25 0.10 15.20 16 4 H 0.01 0.88 7.57 -2.39 -0.02 0.86 16 5 C -0.55 -30.16 8.73 25.60 0.22 -29.94 16 6 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 7 C 0.02 1.07 5.29 84.66 0.45 1.52 16 8 N -0.91 -52.38 11.29 21.45 0.24 -52.14 16 9 Si 0.97 42.90 29.54 68.60 2.03 44.93 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 13 N -0.69 -31.07 5.16 -327.46 -1.69 -32.76 16 14 C 0.38 16.22 6.14 133.15 0.82 17.04 16 15 N -0.33 -15.13 7.59 -54.93 -0.42 -15.55 16 16 N -0.25 -10.04 11.46 -56.71 -0.65 -10.69 16 17 C 0.03 0.82 11.40 85.04 0.97 1.79 16 18 C -0.12 -3.38 6.49 -20.25 -0.13 -3.51 16 19 C -0.20 -3.42 11.13 23.44 0.26 -3.16 16 20 C 0.03 0.44 11.97 66.90 0.80 1.24 16 21 O -0.19 -5.29 10.56 -4.14 -0.04 -5.33 16 22 C -0.06 -1.96 7.38 23.25 0.17 -1.79 16 23 H 0.04 2.06 7.69 -2.38 -0.02 2.04 16 24 H 0.03 1.43 5.59 -2.39 -0.01 1.42 16 25 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 4.24 5.95 -2.38 -0.01 4.23 16 28 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.41 16.77 8.56 -92.71 -0.79 15.97 16 30 H 0.21 4.12 8.06 -2.91 -0.02 4.09 16 31 H 0.21 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.27 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -70.04 273.47 4.26 -65.78 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.36 Total: 18.11 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 4.43 Total: -12.34 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -2.51 Total: -111.14 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.04 Total: -5.33 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -70.04 4.26 -65.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309997979.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.593 kcal (2) G-P(sol) polarization free energy of solvation -70.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds