Wall clock time and date at job start Mon Mar 30 2020 06:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99949 * 2 1 4 4 H 1.48494 * 109.46979 * 240.00131 * 3 2 1 5 5 H 1.48502 * 109.46674 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47175 * 120.00170 * 3 2 1 7 7 C 1.37879 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47214 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.47160 * 180.02562 * 10 9 7 12 12 C 1.35896 * 116.99941 * 180.02562 * 11 10 9 13 13 C 1.38648 * 119.94748 * 359.97438 * 12 11 10 14 14 C 1.38122 * 119.86827 * 179.97438 * 13 12 11 15 15 C 1.38175 * 120.00010 * 0.02562 * 14 13 12 16 16 C 1.38506 * 120.33087 * 0.02562 * 15 14 13 17 17 C 1.38171 * 119.87973 * 359.97438 * 16 15 14 18 18 C 1.51355 * 109.77553 * 179.97438 * 17 16 15 19 19 H 1.08998 * 110.30796 * 136.09923 * 18 17 16 20 20 N 1.46907 * 110.30302 * 258.15695 * 18 17 16 21 21 C 1.54353 * 105.17020 * 17.17623 * 18 17 16 22 22 C 1.51380 * 130.36397 * 179.97438 * 16 15 14 23 23 H 0.97000 * 120.00086 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47034 * 60.00104 * 9 7 2 25 25 H 1.08994 * 109.47241 * 300.00536 * 9 7 2 26 26 H 1.09003 * 109.47047 * 60.00097 * 10 9 7 27 27 H 1.09005 * 109.47021 * 300.00570 * 10 9 7 28 28 H 1.07993 * 120.06778 * 0.02562 * 13 12 11 29 29 H 1.08005 * 120.00265 * 180.02562 * 14 13 12 30 30 H 1.07995 * 119.83799 * 179.72438 * 15 14 13 31 31 H 1.00899 * 110.99689 * 180.02562 * 20 18 17 32 32 H 1.00901 * 110.99880 * 303.95136 * 20 18 17 33 33 H 1.08997 * 110.82049 * 91.88744 * 21 18 17 34 34 H 1.08995 * 110.82224 * 215.24686 * 21 18 17 35 35 H 1.09000 * 110.30246 * 43.93360 * 22 16 15 36 36 H 1.09002 * 110.38347 * 281.83122 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 8 1.5308 -4.8997 0.0032 12 6 2.2710 -6.0394 0.0047 13 6 3.6555 -5.9655 0.0051 14 6 4.4062 -7.1249 0.0072 15 6 3.7772 -8.3552 0.0083 16 6 2.3944 -8.4338 0.0068 17 6 1.6392 -7.2768 0.0048 18 6 0.1666 -7.6264 0.0028 19 1 -0.3727 -6.9966 0.7103 20 7 -0.3927 -7.4701 -1.3466 21 6 0.1017 -9.1042 0.4438 22 6 1.4810 -9.6410 0.0070 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6247 -2.5563 0.8919 26 1 2.8720 -3.6036 0.8927 27 1 2.8721 -3.6051 -0.8873 28 1 4.1460 -5.0034 0.0047 29 1 5.4848 -7.0699 0.0079 30 1 4.3667 -9.2601 0.0054 31 1 -1.3750 -7.7004 -1.3598 32 1 -0.2356 -6.5372 -1.6973 33 1 -0.0189 -9.1811 1.5244 34 1 -0.7028 -9.6277 -0.0725 35 1 1.8391 -10.3861 0.7175 36 1 1.4201 -10.0712 -0.9927 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379461696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:22 Heat of formation + Delta-G solvation = -29.253904 kcal Electronic energy + Delta-G solvation = -17437.307562 eV Core-core repulsion = 14692.640487 eV Total energy + Delta-G solvation = -2744.667075 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.32882 -38.01622 -35.72653 -33.42520 -32.16983 -30.64912 -29.09308 -28.78327 -25.68041 -25.01443 -22.29565 -21.73501 -20.24692 -19.95891 -17.35717 -16.17575 -16.11718 -15.79032 -15.54939 -15.08884 -14.81385 -14.56903 -13.85235 -13.52470 -13.30446 -12.61133 -12.56996 -12.32434 -11.73006 -11.56267 -11.42441 -11.31792 -11.03816 -11.01172 -10.80450 -10.75155 -10.47203 -9.86300 -9.67608 -9.33755 -8.72269 -8.46801 -8.35680 -7.78664 -6.12466 -4.17218 1.49262 1.70254 3.27390 3.31783 3.33547 3.84315 3.92008 4.39432 4.44642 4.65048 4.81575 5.07941 5.13287 5.22693 5.24005 5.38101 5.45808 5.69585 5.72475 5.82276 5.89729 5.96976 6.01872 6.05255 6.14158 6.21949 6.52993 6.62429 6.69749 6.75109 7.02989 7.24568 7.47353 7.56305 7.60774 7.79289 8.04179 8.21652 8.87993 9.47246 10.99055 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.034715 B = 0.004752 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.380819 B = 5890.786160 C = 6568.487811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.065 3.935 11 O -0.317 6.317 12 C 0.163 3.837 13 C -0.217 4.217 14 C -0.075 4.075 15 C -0.163 4.163 16 C -0.047 4.047 17 C -0.138 4.138 18 C 0.140 3.860 19 H 0.046 0.954 20 N -0.839 5.839 21 C -0.114 4.114 22 C -0.072 4.072 23 H 0.264 0.736 24 H 0.027 0.973 25 H 0.026 0.974 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.132 0.868 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.338 0.662 32 H 0.350 0.650 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.207 -17.378 0.339 17.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.009 4.009 11 O -0.230 6.230 12 C 0.115 3.885 13 C -0.236 4.236 14 C -0.093 4.093 15 C -0.182 4.182 16 C -0.048 4.048 17 C -0.139 4.139 18 C 0.029 3.971 19 H 0.064 0.936 20 N -0.370 5.370 21 C -0.152 4.152 22 C -0.109 4.109 23 H 0.074 0.926 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.149 0.851 29 H 0.140 0.860 30 H 0.134 0.866 31 H 0.150 0.850 32 H 0.163 0.837 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.335 -17.771 0.134 18.082 hybrid contribution 0.205 1.911 0.405 1.964 sum 3.540 -15.861 0.539 16.260 Atomic orbital electron populations 1.69963 1.06114 1.27098 1.49625 1.24983 0.94901 0.99373 0.94848 0.86544 0.79509 0.82567 0.78742 1.20064 1.21091 1.20088 1.20933 0.93022 0.90226 1.52387 0.92421 1.19102 0.94133 0.89048 0.98718 1.23327 0.97084 0.80843 0.99653 1.86146 1.36661 1.13222 1.86999 1.18809 0.89964 0.86290 0.93410 1.21246 0.92727 0.99910 1.09713 1.20798 0.99352 0.91732 0.97425 1.20393 0.93008 0.97511 1.07244 1.20342 0.93146 0.94763 0.96536 1.19614 0.95558 0.90510 1.08214 1.20511 0.90931 0.95443 0.90208 0.93649 1.58816 1.20566 1.34448 1.23141 1.22325 0.97379 0.94924 1.00593 1.20946 0.93049 0.94949 1.01976 0.92647 0.95480 0.95546 0.93188 0.93126 0.85055 0.85980 0.86589 0.85000 0.83664 0.90944 0.90314 0.91084 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 10 C 0.06 1.40 4.68 37.16 0.17 1.57 16 11 O -0.32 -6.54 10.08 -19.41 -0.20 -6.74 16 12 C 0.16 2.95 6.69 -39.17 -0.26 2.69 16 13 C -0.22 -3.55 9.03 -39.47 -0.36 -3.91 16 14 C -0.07 -1.03 10.04 -39.65 -0.40 -1.43 16 15 C -0.16 -2.16 10.04 -39.51 -0.40 -2.56 16 16 C -0.05 -0.67 6.14 -104.21 -0.64 -1.31 16 17 C -0.14 -2.23 5.68 -104.07 -0.59 -2.82 16 18 C 0.14 1.98 3.93 -67.83 -0.27 1.71 16 19 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 20 N -0.84 -11.18 9.27 -4.77 -0.04 -11.23 16 21 C -0.11 -1.25 6.78 -25.33 -0.17 -1.43 16 22 C -0.07 -0.80 6.77 -26.86 -0.18 -0.98 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 1.03 7.66 -51.93 -0.40 0.64 16 27 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 28 H 0.13 2.09 6.29 -52.49 -0.33 1.76 16 29 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.34 3.66 9.08 -39.29 -0.36 3.30 16 32 H 0.35 5.17 9.01 -39.29 -0.35 4.82 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 301.96 15.07 4.55 4.55 Total: -1.00 -30.26 301.96 -8.80 -39.06 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.18 Total: 5.07 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -3.65 Total: -21.28 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.69 Total: -36.88 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.20 Total: -6.74 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.26 -8.80 -39.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379461696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.806 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds