Wall clock time and date at job start Mon Mar 30 2020 06:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99949 * 2 1 4 4 H 1.48494 * 109.46979 * 240.00131 * 3 2 1 5 5 H 1.48502 * 109.46674 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47175 * 120.00170 * 3 2 1 7 7 C 1.37879 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47214 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.47160 * 180.02562 * 10 9 7 12 12 C 1.35896 * 116.99941 * 180.02562 * 11 10 9 13 13 C 1.38648 * 119.94748 * 359.97438 * 12 11 10 14 14 C 1.38122 * 119.86827 * 179.97438 * 13 12 11 15 15 C 1.38175 * 120.00010 * 0.02562 * 14 13 12 16 16 C 1.38506 * 120.33087 * 0.02562 * 15 14 13 17 17 C 1.38171 * 119.87973 * 359.97438 * 16 15 14 18 18 C 1.51355 * 109.77553 * 179.97438 * 17 16 15 19 19 H 1.08998 * 110.30796 * 136.09923 * 18 17 16 20 20 N 1.46907 * 110.30302 * 258.15695 * 18 17 16 21 21 C 1.54353 * 105.17020 * 17.17623 * 18 17 16 22 22 C 1.51380 * 130.36397 * 179.97438 * 16 15 14 23 23 H 0.97000 * 120.00086 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47034 * 60.00104 * 9 7 2 25 25 H 1.08994 * 109.47241 * 300.00536 * 9 7 2 26 26 H 1.09003 * 109.47047 * 60.00097 * 10 9 7 27 27 H 1.09005 * 109.47021 * 300.00570 * 10 9 7 28 28 H 1.07993 * 120.06778 * 0.02562 * 13 12 11 29 29 H 1.08005 * 120.00265 * 180.02562 * 14 13 12 30 30 H 1.07995 * 119.83799 * 179.72438 * 15 14 13 31 31 H 1.00899 * 110.99689 * 180.02562 * 20 18 17 32 32 H 1.00901 * 110.99880 * 303.95136 * 20 18 17 33 33 H 1.08997 * 110.82049 * 91.88744 * 21 18 17 34 34 H 1.08995 * 110.82224 * 215.24686 * 21 18 17 35 35 H 1.09000 * 110.30246 * 43.93360 * 22 16 15 36 36 H 1.09002 * 110.38347 * 281.83122 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 8 1.5308 -4.8997 0.0032 12 6 2.2710 -6.0394 0.0047 13 6 3.6555 -5.9655 0.0051 14 6 4.4062 -7.1249 0.0072 15 6 3.7772 -8.3552 0.0083 16 6 2.3944 -8.4338 0.0068 17 6 1.6392 -7.2768 0.0048 18 6 0.1666 -7.6264 0.0028 19 1 -0.3727 -6.9966 0.7103 20 7 -0.3927 -7.4701 -1.3466 21 6 0.1017 -9.1042 0.4438 22 6 1.4810 -9.6410 0.0070 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6247 -2.5563 0.8919 26 1 2.8720 -3.6036 0.8927 27 1 2.8721 -3.6051 -0.8873 28 1 4.1460 -5.0034 0.0047 29 1 5.4848 -7.0699 0.0079 30 1 4.3667 -9.2601 0.0054 31 1 -1.3750 -7.7004 -1.3598 32 1 -0.2356 -6.5372 -1.6973 33 1 -0.0189 -9.1811 1.5244 34 1 -0.7028 -9.6277 -0.0725 35 1 1.8391 -10.3861 0.7175 36 1 1.4201 -10.0712 -0.9927 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379461696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:21 Heat of formation + Delta-G solvation = -48.540346 kcal Electronic energy + Delta-G solvation = -17438.143885 eV Core-core repulsion = 14692.640487 eV Total energy + Delta-G solvation = -2745.503398 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.52524 -39.39274 -36.85142 -35.50330 -33.28472 -32.44090 -30.49320 -29.84580 -27.00187 -26.69619 -23.70979 -23.20311 -21.43006 -21.27843 -18.97417 -17.98293 -17.29751 -17.01621 -16.97530 -16.52857 -16.37326 -15.91711 -15.04260 -14.64989 -14.45132 -14.30794 -14.16369 -13.87913 -13.15103 -13.08156 -12.69982 -12.57686 -12.54857 -12.36286 -12.11292 -12.00158 -11.87317 -11.58521 -11.54384 -11.42424 -10.63760 -9.83228 -9.46977 -9.06535 -8.28897 -6.42910 0.35578 0.51109 1.39421 1.43329 1.51381 2.26020 2.50643 2.76903 3.05504 3.42440 3.61386 3.79529 4.03790 4.06115 4.18573 4.22711 4.25458 4.37925 4.45817 4.65072 4.69362 4.77435 4.84664 4.97980 5.07597 5.13266 5.26495 5.29318 5.42958 5.43507 5.51779 5.62200 5.67447 5.93369 6.05488 6.11907 6.48854 6.57500 6.71218 7.27391 8.83947 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.034715 B = 0.004752 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.380819 B = 5890.786160 C = 6568.487811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.549 4.549 8 H 0.069 0.931 9 C 0.032 3.968 10 C 0.085 3.915 11 O -0.339 6.339 12 C 0.122 3.878 13 C -0.232 4.232 14 C -0.074 4.074 15 C -0.155 4.155 16 C -0.052 4.052 17 C -0.158 4.158 18 C 0.132 3.868 19 H 0.022 0.978 20 N -0.836 5.836 21 C -0.107 4.107 22 C -0.068 4.068 23 H 0.267 0.733 24 H -0.002 1.002 25 H -0.004 1.004 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.128 0.872 29 H 0.154 0.846 30 H 0.152 0.848 31 H 0.350 0.650 32 H 0.338 0.662 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.122 -19.104 0.389 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.586 4.586 8 H 0.088 0.912 9 C -0.005 4.005 10 C 0.011 3.989 11 O -0.253 6.253 12 C 0.076 3.924 13 C -0.251 4.251 14 C -0.092 4.092 15 C -0.173 4.173 16 C -0.052 4.052 17 C -0.159 4.159 18 C 0.021 3.979 19 H 0.040 0.960 20 N -0.367 5.367 21 C -0.144 4.144 22 C -0.104 4.104 23 H 0.076 0.924 24 H 0.017 0.983 25 H 0.014 0.986 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.146 0.854 29 H 0.172 0.828 30 H 0.170 0.830 31 H 0.164 0.836 32 H 0.149 0.851 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.253 -19.537 0.186 20.232 hybrid contribution -0.405 2.311 0.386 2.378 sum 4.848 -17.226 0.571 17.904 Atomic orbital electron populations 1.70110 1.08040 1.28319 1.50461 1.26028 0.95814 1.03638 0.94027 0.85343 0.78149 0.77192 0.79430 1.18827 1.20658 1.18869 1.21361 0.93789 0.91060 1.52427 0.91238 1.18924 0.94428 0.91316 0.95838 1.22837 0.95428 0.80408 1.00230 1.86066 1.37392 1.13631 1.88242 1.19216 0.90976 0.85810 0.96365 1.21394 0.92219 1.01045 1.10428 1.21190 1.00873 0.91015 0.96117 1.20865 0.93007 0.98606 1.04842 1.20850 0.93935 0.95096 0.95366 1.20008 0.97018 0.90560 1.08361 1.20659 0.89861 0.97423 0.89923 0.96036 1.58859 1.21630 1.33454 1.22715 1.22349 0.98329 0.92335 1.01438 1.21023 0.92016 0.94160 1.03232 0.92410 0.98324 0.98560 0.92526 0.92430 0.85407 0.82820 0.82992 0.83577 0.85065 0.89932 0.88508 0.88274 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.98 43.64 29.54 68.60 2.03 45.67 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.55 -31.30 9.11 25.60 0.23 -31.06 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 9 C 0.03 1.78 5.34 29.85 0.16 1.94 16 10 C 0.09 3.85 4.68 71.98 0.34 4.19 16 11 O -0.34 -14.82 10.08 -92.39 -0.93 -15.75 16 12 C 0.12 4.55 6.69 22.54 0.15 4.70 16 13 C -0.23 -7.53 9.03 22.34 0.20 -7.33 16 14 C -0.07 -1.87 10.04 22.23 0.22 -1.64 16 15 C -0.16 -3.59 10.04 22.32 0.22 -3.36 16 16 C -0.05 -1.34 6.14 -19.60 -0.12 -1.46 16 17 C -0.16 -5.11 5.68 -19.50 -0.11 -5.23 16 18 C 0.13 3.75 3.93 44.84 0.18 3.93 16 19 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 20 N -0.84 -22.51 9.27 -169.00 -1.57 -24.08 16 21 C -0.11 -2.11 6.78 31.50 0.21 -1.90 16 22 C -0.07 -1.27 6.77 30.51 0.21 -1.07 16 23 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 24 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 25 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.06 2.43 7.66 -2.39 -0.02 2.41 16 27 H 0.06 2.47 7.66 -2.38 -0.02 2.45 16 28 H 0.13 4.10 6.29 -2.91 -0.02 4.08 16 29 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 30 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.35 7.57 9.08 -89.69 -0.81 6.75 16 32 H 0.34 10.52 9.01 -89.69 -0.81 9.71 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.10 1.57 8.08 -2.39 -0.02 1.55 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -67.62 301.96 1.64 -65.98 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -0.53 Total: 22.31 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 2.36 Total: -37.62 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.28 Total: -80.59 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.93 Total: -15.75 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -67.62 1.64 -65.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379461696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.442 kcal (2) G-P(sol) polarization free energy of solvation -67.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds