Wall clock time and date at job start Mon Mar 30 2020 06:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00010 * 2 1 4 4 H 1.48506 * 109.46551 * 89.99877 * 3 2 1 5 5 H 1.48497 * 109.47077 * 330.00734 * 3 2 1 6 6 H 1.48494 * 109.47590 * 210.00036 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00154 * 6.63089 * 7 2 1 9 9 C 1.50707 * 119.99660 * 186.63254 * 7 2 1 10 10 H 1.08992 * 109.47212 * 305.18342 * 9 7 2 11 11 N 1.46901 * 109.46870 * 65.18515 * 9 7 2 12 12 C 1.50701 * 109.46959 * 185.17970 * 9 7 2 13 13 C 1.38166 * 120.08559 * 279.72700 * 12 9 7 14 14 C 1.38431 * 119.71105 * 179.88828 * 13 12 9 15 15 O 1.35901 * 119.79137 * 180.25785 * 14 13 12 16 16 C 1.39405 * 120.42272 * 0.49136 * 14 13 12 17 17 C 1.37563 * 119.65115 * 359.52192 * 16 14 13 18 18 C 1.37965 * 120.07793 * 100.00183 * 12 9 7 19 19 C 1.50643 * 122.55422 * 180.75202 * 17 16 14 20 20 C 1.52723 * 110.60143 * 342.16874 * 19 17 16 21 21 C 1.53327 * 108.40034 * 51.07248 * 20 19 17 22 22 C 1.50622 * 117.75792 * 179.40739 * 16 14 13 23 23 H 0.97006 * 119.99799 * 174.92755 * 1 2 3 24 24 H 1.00905 * 110.99836 * 293.56107 * 11 9 7 25 25 H 1.00902 * 111.00509 * 57.51651 * 11 9 7 26 26 H 1.08007 * 120.14534 * 0.11061 * 13 12 9 27 27 H 0.96707 * 113.99922 * 270.23009 * 15 14 13 28 28 H 1.08003 * 119.66811 * 359.97285 * 18 12 9 29 29 H 1.08996 * 109.25520 * 102.45670 * 19 17 16 30 30 H 1.09000 * 109.25122 * 221.88374 * 19 17 16 31 31 H 1.09007 * 109.67553 * 291.34849 * 20 19 17 32 32 H 1.08997 * 109.71520 * 170.82066 * 20 19 17 33 33 H 1.09003 * 109.68167 * 170.46112 * 21 20 19 34 34 H 1.08995 * 109.68538 * 49.90377 * 21 20 19 35 35 H 1.08999 * 109.25588 * 282.49226 * 22 16 14 36 36 H 1.09005 * 109.24984 * 41.95687 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0463 1.4002 5 1 1.4465 2.6527 -0.6999 6 1 3.5467 1.4403 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4700 -2.1262 -0.1089 9 6 3.5040 -1.1985 0.1502 10 1 3.9478 -0.5595 -0.6132 11 7 3.8637 -0.6927 1.4817 12 6 4.0208 -2.6051 -0.0093 13 6 3.9526 -3.4921 1.0479 14 6 4.4274 -4.7830 0.8921 15 8 4.3563 -5.6584 1.9292 16 6 4.9826 -5.1894 -0.3204 17 6 5.0486 -4.3026 -1.3699 18 6 4.5684 -3.0086 -1.2096 19 6 5.6196 -4.6770 -2.7128 20 6 6.4720 -5.9392 -2.6013 21 6 5.6510 -7.0157 -1.8814 22 6 5.4929 -6.6031 -0.4194 23 1 -0.4850 -0.8368 -0.0743 24 1 3.6214 0.2823 1.5758 25 1 3.4310 -1.2445 2.2072 26 1 3.5273 -3.1807 1.9906 27 1 5.1325 -5.6487 2.5059 28 1 4.6240 -2.3118 -2.0329 29 1 4.8038 -4.8550 -3.4133 30 1 6.2370 -3.8579 -3.0817 31 1 7.3750 -5.7231 -2.0301 32 1 6.7429 -6.2892 -3.5974 33 1 6.1698 -7.9726 -1.9388 34 1 4.6692 -7.1012 -2.3470 35 1 6.4592 -6.6723 0.0802 36 1 4.7870 -7.2751 0.0688 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380597351.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:33 Heat of formation + Delta-G solvation = -44.406158 kcal Electronic energy + Delta-G solvation = -17954.490899 eV Core-core repulsion = 15209.166773 eV Total energy + Delta-G solvation = -2745.324126 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.99068 -37.02951 -36.48902 -33.92841 -31.78945 -31.37293 -29.42727 -28.18921 -25.71016 -23.50475 -22.80486 -21.66480 -20.67763 -18.61466 -17.75742 -17.45153 -15.93649 -15.64261 -15.22562 -14.38056 -14.12787 -13.86441 -13.69014 -13.54778 -13.22207 -12.64517 -12.46932 -12.41438 -12.23014 -11.80058 -11.40048 -11.11343 -10.92602 -10.82116 -10.71135 -10.45706 -10.30016 -10.00692 -9.66464 -9.23149 -8.64462 -8.01126 -7.97470 -7.58235 -6.49898 -4.28721 1.79766 1.93206 3.24123 3.33563 3.46261 4.15144 4.31920 4.59021 4.81498 4.89463 4.94370 5.13151 5.28907 5.38546 5.57620 5.62314 5.63615 5.71240 5.85939 5.88907 5.99721 6.04095 6.10865 6.23478 6.26533 6.30930 6.37288 6.57169 6.84533 6.97718 7.03523 7.33794 7.43279 7.74521 8.03823 8.16352 8.28161 8.39750 8.77746 9.45349 10.79794 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.031106 B = 0.006333 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.943646 B = 4420.489319 C = 4805.937447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.028 3.972 3 Si 1.048 2.952 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.619 4.619 8 H 0.058 0.942 9 C 0.205 3.795 10 H 0.051 0.949 11 N -0.851 5.851 12 C -0.003 4.003 13 C -0.131 4.131 14 C 0.094 3.906 15 O -0.500 6.500 16 C -0.127 4.127 17 C -0.067 4.067 18 C -0.134 4.134 19 C -0.077 4.077 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.068 4.068 23 H 0.269 0.731 24 H 0.321 0.679 25 H 0.329 0.671 26 H 0.123 0.877 27 H 0.380 0.620 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.146 -10.057 -1.831 16.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.877 3.123 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.659 4.659 8 H 0.076 0.924 9 C 0.095 3.905 10 H 0.068 0.932 11 N -0.381 5.381 12 C -0.003 4.003 13 C -0.150 4.150 14 C 0.050 3.950 15 O -0.309 6.309 16 C -0.128 4.128 17 C -0.067 4.067 18 C -0.152 4.152 19 C -0.114 4.114 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.105 4.105 23 H 0.080 0.920 24 H 0.135 0.865 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.234 0.766 28 H 0.135 0.865 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.141 -8.725 -2.228 15.930 hybrid contribution -0.690 -1.348 0.315 1.547 sum 12.450 -10.073 -1.913 16.129 Atomic orbital electron populations 1.70797 1.06731 1.30859 1.45316 1.25870 0.96449 1.02462 0.92975 0.83913 0.75371 0.75583 0.77464 1.20706 1.21132 1.20080 1.22685 0.91322 0.95580 1.56301 0.92403 1.18515 0.94742 0.88433 0.88761 0.93151 1.59714 1.66151 1.06426 1.05847 1.19877 0.91842 0.96738 0.91892 1.21082 1.01827 0.91746 1.00312 1.18433 1.00404 0.88618 0.87579 1.84797 1.45219 1.60761 1.40096 1.19589 1.03182 0.96121 0.93871 1.19322 0.99503 0.93207 0.94669 1.21008 1.00876 0.95540 0.97817 1.20419 0.99028 0.97757 0.94207 1.21530 0.98430 0.95297 1.00238 1.21537 1.00463 0.97933 0.95675 1.20211 1.00490 0.93121 0.96701 0.92041 0.86530 0.85873 0.85931 0.76612 0.86466 0.90907 0.90951 0.91824 0.91855 0.91929 0.91751 0.91724 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.70 55.43 0.76 -26.68 16 2 C 0.03 0.80 5.46 -17.82 -0.10 0.71 16 3 Si 1.05 24.49 25.54 -169.99 -4.34 20.15 16 4 H -0.28 -6.12 6.93 56.52 0.39 -5.73 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.05 6.36 56.52 0.36 -5.69 16 7 C -0.62 -17.20 9.06 -34.44 -0.31 -17.51 16 8 H 0.06 1.78 7.97 -52.49 -0.42 1.37 16 9 C 0.20 4.87 2.47 -70.01 -0.17 4.70 16 10 H 0.05 1.23 6.47 -51.93 -0.34 0.89 16 11 N -0.85 -18.59 8.99 -6.65 -0.06 -18.65 16 12 C 0.00 -0.06 4.89 -104.75 -0.51 -0.57 16 13 C -0.13 -2.66 9.23 -39.54 -0.37 -3.02 16 14 C 0.09 1.68 6.66 -39.08 -0.26 1.42 16 15 O -0.50 -7.74 12.52 -19.43 -0.24 -7.98 16 16 C -0.13 -2.11 5.75 -104.47 -0.60 -2.71 16 17 C -0.07 -1.13 5.74 -104.63 -0.60 -1.73 16 18 C -0.13 -2.61 9.23 -39.42 -0.36 -2.97 16 19 C -0.08 -1.02 5.67 -28.05 -0.16 -1.18 16 20 C -0.12 -1.29 5.98 -26.70 -0.16 -1.45 16 21 C -0.12 -1.34 5.98 -26.70 -0.16 -1.50 16 22 C -0.07 -0.89 5.28 -28.06 -0.15 -1.04 16 23 H 0.27 8.24 8.72 -40.82 -0.36 7.89 16 24 H 0.32 6.98 5.48 -39.29 -0.22 6.77 16 25 H 0.33 6.99 7.43 -39.29 -0.29 6.70 16 26 H 0.12 2.49 6.73 -52.48 -0.35 2.14 16 27 H 0.38 3.97 9.06 45.56 0.41 4.38 16 28 H 0.12 2.16 8.02 -52.48 -0.42 1.74 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.98 7.75 -51.93 -0.40 0.58 16 LS Contribution 287.09 15.07 4.33 4.33 Total: -1.00 -31.09 287.09 -7.65 -38.74 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -4.18 Total: 16.95 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -3.91 Total: -26.85 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.70 Total: -45.33 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.24 Total: -7.98 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -4.34 Total: 20.15 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.09 -7.65 -38.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380597351.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.666 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds