Wall clock time and date at job start Mon Mar 30 2020 06:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00010 * 2 1 4 4 H 1.48506 * 109.46551 * 89.99877 * 3 2 1 5 5 H 1.48497 * 109.47077 * 330.00734 * 3 2 1 6 6 H 1.48494 * 109.47590 * 210.00036 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00154 * 6.63089 * 7 2 1 9 9 C 1.50707 * 119.99660 * 186.63254 * 7 2 1 10 10 H 1.08992 * 109.47212 * 305.18342 * 9 7 2 11 11 N 1.46901 * 109.46870 * 65.18515 * 9 7 2 12 12 C 1.50701 * 109.46959 * 185.17970 * 9 7 2 13 13 C 1.38166 * 120.08559 * 279.72700 * 12 9 7 14 14 C 1.38431 * 119.71105 * 179.88828 * 13 12 9 15 15 O 1.35901 * 119.79137 * 180.25785 * 14 13 12 16 16 C 1.39405 * 120.42272 * 0.49136 * 14 13 12 17 17 C 1.37563 * 119.65115 * 359.52192 * 16 14 13 18 18 C 1.37965 * 120.07793 * 100.00183 * 12 9 7 19 19 C 1.50643 * 122.55422 * 180.75202 * 17 16 14 20 20 C 1.52723 * 110.60143 * 342.16874 * 19 17 16 21 21 C 1.53327 * 108.40034 * 51.07248 * 20 19 17 22 22 C 1.50622 * 117.75792 * 179.40739 * 16 14 13 23 23 H 0.97006 * 119.99799 * 174.92755 * 1 2 3 24 24 H 1.00905 * 110.99836 * 293.56107 * 11 9 7 25 25 H 1.00902 * 111.00509 * 57.51651 * 11 9 7 26 26 H 1.08007 * 120.14534 * 0.11061 * 13 12 9 27 27 H 0.96707 * 113.99922 * 270.23009 * 15 14 13 28 28 H 1.08003 * 119.66811 * 359.97285 * 18 12 9 29 29 H 1.08996 * 109.25520 * 102.45670 * 19 17 16 30 30 H 1.09000 * 109.25122 * 221.88374 * 19 17 16 31 31 H 1.09007 * 109.67553 * 291.34849 * 20 19 17 32 32 H 1.08997 * 109.71520 * 170.82066 * 20 19 17 33 33 H 1.09003 * 109.68167 * 170.46112 * 21 20 19 34 34 H 1.08995 * 109.68538 * 49.90377 * 21 20 19 35 35 H 1.08999 * 109.25588 * 282.49226 * 22 16 14 36 36 H 1.09005 * 109.24984 * 41.95687 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0463 1.4002 5 1 1.4465 2.6527 -0.6999 6 1 3.5467 1.4403 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4700 -2.1262 -0.1089 9 6 3.5040 -1.1985 0.1502 10 1 3.9478 -0.5595 -0.6132 11 7 3.8637 -0.6927 1.4817 12 6 4.0208 -2.6051 -0.0093 13 6 3.9526 -3.4921 1.0479 14 6 4.4274 -4.7830 0.8921 15 8 4.3563 -5.6584 1.9292 16 6 4.9826 -5.1894 -0.3204 17 6 5.0486 -4.3026 -1.3699 18 6 4.5684 -3.0086 -1.2096 19 6 5.6196 -4.6770 -2.7128 20 6 6.4720 -5.9392 -2.6013 21 6 5.6510 -7.0157 -1.8814 22 6 5.4929 -6.6031 -0.4194 23 1 -0.4850 -0.8368 -0.0743 24 1 3.6214 0.2823 1.5758 25 1 3.4310 -1.2445 2.2072 26 1 3.5273 -3.1807 1.9906 27 1 5.1325 -5.6487 2.5059 28 1 4.6240 -2.3118 -2.0329 29 1 4.8038 -4.8550 -3.4133 30 1 6.2370 -3.8579 -3.0817 31 1 7.3750 -5.7231 -2.0301 32 1 6.7429 -6.2892 -3.5974 33 1 6.1698 -7.9726 -1.9388 34 1 4.6692 -7.1012 -2.3470 35 1 6.4592 -6.6723 0.0802 36 1 4.7870 -7.2751 0.0688 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380597351.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:32 Heat of formation + Delta-G solvation = -67.266881 kcal Electronic energy + Delta-G solvation = -17955.482214 eV Core-core repulsion = 15209.166773 eV Total energy + Delta-G solvation = -2746.315441 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.32346 -38.24602 -38.01628 -35.58544 -33.80213 -32.52932 -30.79638 -29.57671 -27.63565 -24.82717 -24.18990 -23.00424 -22.13312 -20.03618 -19.75188 -18.82861 -17.47020 -17.04703 -16.46007 -15.93047 -15.63659 -15.27110 -15.10029 -14.76851 -14.63851 -14.39307 -14.20044 -13.65704 -13.47578 -13.33016 -12.83735 -12.71519 -12.34091 -12.11741 -11.90663 -11.72163 -11.69421 -11.38127 -11.32161 -10.95168 -10.81353 -9.67869 -9.42733 -9.32833 -8.68389 -6.57822 0.36300 0.49035 1.36550 1.47107 1.63102 2.35569 2.72186 2.95182 3.30830 3.71901 3.79945 3.94900 4.06498 4.21693 4.26392 4.31706 4.43495 4.56883 4.66388 4.67870 4.80486 4.93999 5.00047 5.07206 5.10004 5.14623 5.22070 5.35618 5.46997 5.51781 5.60242 5.70773 5.84799 5.88340 6.03233 6.29883 6.41665 6.68174 6.87393 7.25647 8.49615 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.031106 B = 0.006333 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.943646 B = 4420.489319 C = 4805.937447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.021 4.021 3 Si 1.088 2.912 4 H -0.252 1.252 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.618 4.618 8 H 0.010 0.990 9 C 0.212 3.788 10 H 0.048 0.952 11 N -0.837 5.837 12 C -0.036 4.036 13 C -0.155 4.155 14 C 0.097 3.903 15 O -0.503 6.503 16 C -0.126 4.126 17 C -0.064 4.064 18 C -0.151 4.151 19 C -0.079 4.079 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.067 4.067 23 H 0.251 0.749 24 H 0.324 0.676 25 H 0.332 0.668 26 H 0.111 0.889 27 H 0.404 0.596 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.023 -11.092 -2.321 19.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.220 4.220 3 Si 0.908 3.092 4 H -0.176 1.176 5 H -0.213 1.213 6 H -0.176 1.176 7 C -0.658 4.658 8 H 0.028 0.972 9 C 0.102 3.898 10 H 0.066 0.934 11 N -0.367 5.367 12 C -0.037 4.037 13 C -0.174 4.174 14 C 0.052 3.948 15 O -0.315 6.315 16 C -0.127 4.127 17 C -0.064 4.064 18 C -0.170 4.170 19 C -0.116 4.116 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.104 4.104 23 H 0.060 0.940 24 H 0.137 0.863 25 H 0.144 0.856 26 H 0.129 0.871 27 H 0.262 0.738 28 H 0.138 0.862 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.044 -9.793 -2.690 18.988 hybrid contribution -1.591 -1.201 0.493 2.053 sum 14.453 -10.994 -2.197 18.292 Atomic orbital electron populations 1.70937 1.08060 1.29734 1.48232 1.27397 0.96321 1.06408 0.91852 0.83454 0.74994 0.71297 0.79409 1.17641 1.21298 1.17647 1.22828 0.93880 0.93618 1.55441 0.97199 1.18323 0.91771 0.90329 0.89395 0.93391 1.59646 1.65574 1.06539 1.04980 1.19808 0.94284 0.95989 0.93580 1.21090 1.03401 0.93173 0.99726 1.18496 0.99541 0.87880 0.88867 1.84729 1.47009 1.59717 1.40047 1.20064 1.01788 0.97960 0.92886 1.19755 0.98150 0.92030 0.96504 1.21189 1.01542 0.97139 0.97112 1.20539 0.99645 0.99636 0.91815 1.21539 0.97881 0.93720 1.01819 1.21569 1.00491 0.99400 0.94056 1.20304 1.01210 0.90314 0.98526 0.94011 0.86268 0.85570 0.87093 0.73798 0.86193 0.90624 0.89787 0.91207 0.89337 0.89134 0.92751 0.89523 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.90 13.70 21.45 0.29 -58.60 16 2 C -0.02 -1.23 5.46 84.66 0.46 -0.77 16 3 Si 1.09 48.96 25.54 68.60 1.75 50.72 16 4 H -0.25 -10.14 6.93 99.48 0.69 -9.45 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.25 -10.36 6.36 99.48 0.63 -9.73 16 7 C -0.62 -35.73 9.06 25.60 0.23 -35.49 16 8 H 0.01 0.63 7.97 -2.91 -0.02 0.61 16 9 C 0.21 10.23 2.47 43.43 0.11 10.34 16 10 H 0.05 2.33 6.47 -2.39 -0.02 2.31 16 11 N -0.84 -36.37 8.99 -174.95 -1.57 -37.94 16 12 C -0.04 -1.59 4.89 -19.95 -0.10 -1.69 16 13 C -0.15 -6.43 9.23 22.30 0.21 -6.22 16 14 C 0.10 3.40 6.66 22.60 0.15 3.55 16 15 O -0.50 -14.82 12.52 -92.43 -1.16 -15.98 16 16 C -0.13 -3.97 5.75 -19.77 -0.11 -4.08 16 17 C -0.06 -2.08 5.74 -19.87 -0.11 -2.20 16 18 C -0.15 -5.90 9.23 22.38 0.21 -5.70 16 19 C -0.08 -1.89 5.67 29.74 0.17 -1.72 16 20 C -0.11 -2.00 5.98 30.61 0.18 -1.82 16 21 C -0.12 -2.21 5.98 30.61 0.18 -2.02 16 22 C -0.07 -1.53 5.28 29.73 0.16 -1.37 16 23 H 0.25 16.27 8.72 -92.70 -0.81 15.46 16 24 H 0.32 13.65 5.48 -89.69 -0.49 13.15 16 25 H 0.33 14.26 7.43 -89.69 -0.67 13.59 16 26 H 0.11 4.69 6.73 -2.91 -0.02 4.67 16 27 H 0.40 7.56 9.06 -74.05 -0.67 6.89 16 28 H 0.12 4.45 8.02 -2.91 -0.02 4.43 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.08 1.81 8.13 -2.39 -0.02 1.79 16 31 H 0.07 1.19 8.10 -2.38 -0.02 1.17 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.67 7.75 -2.38 -0.02 1.66 16 Total: -1.00 -70.00 287.09 0.20 -69.79 By element: Atomic # 1 Polarization: 42.05 SS G_CDS: -0.84 Total: 41.20 kcal Atomic # 6 Polarization: -50.92 SS G_CDS: 1.73 Total: -49.19 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -1.28 Total: -96.55 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -1.16 Total: -15.98 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 1.75 Total: 50.72 kcal Total: -70.00 0.20 -69.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380597351.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.525 kcal (2) G-P(sol) polarization free energy of solvation -69.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds