Wall clock time and date at job start Mon Mar 30 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 5 5 N 1.46902 * 109.46670 * 130.25924 * 3 2 1 6 6 C 1.46904 * 110.99949 * 85.00489 * 5 3 2 7 7 H 1.08998 * 109.46740 * 324.99371 * 6 5 3 8 8 C 1.52999 * 109.47439 * 84.99497 * 6 5 3 9 9 C 1.50703 * 109.46814 * 204.99919 * 6 5 3 10 10 H 1.07997 * 120.00243 * 359.97438 * 9 6 5 11 11 C 1.37878 * 119.99418 * 179.97438 * 9 6 5 12 12 N 1.31519 * 119.99329 * 179.97438 * 11 9 6 13 13 Si 1.86791 * 120.00463 * 359.97438 * 11 9 6 14 14 H 1.48509 * 109.47258 * 89.99903 * 13 11 9 15 15 H 1.48498 * 109.47371 * 209.99831 * 13 11 9 16 16 H 1.48502 * 109.47211 * 330.00135 * 13 11 9 17 17 C 1.50703 * 109.47167 * 10.26026 * 3 2 1 18 18 C 1.38248 * 119.97021 * 79.72663 * 17 3 2 19 19 C 1.38201 * 120.02194 * 179.72683 * 18 17 3 20 20 C 1.38461 * 119.97175 * 0.52057 * 19 18 17 21 21 F 1.35100 * 120.02698 * 179.72782 * 20 19 18 22 22 C 1.38459 * 119.95101 * 359.75539 * 20 19 18 23 23 C 1.38198 * 119.97534 * 359.97438 * 22 20 19 24 24 H 4.18740 * 15.03805 * 359.97438 * 4 2 1 25 25 H 1.00896 * 111.00544 * 321.04397 * 5 3 2 26 26 H 1.09000 * 109.47120 * 300.00288 * 8 6 5 27 27 H 1.09003 * 109.46927 * 59.99878 * 8 6 5 28 28 H 1.09002 * 109.46876 * 180.02562 * 8 6 5 29 29 H 0.97005 * 119.99453 * 179.97438 * 12 11 9 30 30 H 1.07996 * 119.99115 * 359.97438 * 18 17 3 31 31 H 1.07997 * 120.01901 * 180.25447 * 19 18 17 32 32 H 1.08001 * 120.01419 * 179.97438 * 22 20 19 33 33 H 1.08003 * 119.98865 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.3479 0.9672 5 7 3.1351 0.8960 -1.0570 6 6 3.1974 2.2851 -0.5832 7 1 2.3725 2.4717 0.1044 8 6 4.5259 2.5187 0.1388 9 6 3.0930 3.2220 -1.7590 10 1 2.9911 2.8252 -2.7582 11 6 3.1276 4.5857 -1.5589 12 7 3.0370 5.4033 -2.5851 13 14 3.3032 5.2720 0.1695 14 1 4.7432 5.4384 0.4922 15 1 2.6224 6.5893 0.2506 16 1 2.6836 4.3340 1.1399 17 6 3.1490 -1.3972 -0.2531 18 6 3.1780 -1.8981 -1.5413 19 6 3.6444 -3.1778 -1.7753 20 6 4.0724 -3.9622 -0.7176 21 9 4.5233 -5.2154 -0.9445 22 6 4.0375 -3.4615 0.5728 23 6 3.5760 -2.1795 0.8037 24 1 -1.0500 0.0004 -0.0005 25 1 2.5651 0.8219 -1.8862 26 1 4.6014 1.8411 0.9892 27 1 5.3508 2.3321 -0.5488 28 1 4.5718 3.5494 0.4907 29 1 3.0610 6.3628 -2.4443 30 1 2.8400 -1.2877 -2.3656 31 1 3.6709 -3.5676 -2.7822 32 1 4.3707 -4.0726 1.3986 33 1 3.5490 -1.7886 1.8102 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390372802.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:48 Heat of formation + Delta-G solvation = 41.239460 kcal Electronic energy + Delta-G solvation = -17010.532896 eV Core-core repulsion = 14145.462337 eV Total energy + Delta-G solvation = -2865.070558 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.86604 -39.33452 -36.65173 -33.62650 -31.81339 -31.10518 -30.89047 -28.73020 -25.61813 -24.59338 -22.98298 -21.55041 -20.08815 -18.18289 -17.68484 -16.90119 -16.29148 -15.66723 -15.55790 -15.22620 -14.39573 -14.16509 -13.98673 -13.47581 -13.32672 -12.96190 -12.47969 -12.28984 -12.13172 -12.02569 -11.27700 -11.17601 -10.95424 -10.79822 -10.22048 -10.16015 -9.95127 -9.53430 -9.13104 -9.04739 -8.67215 -8.50934 -7.82759 -6.15041 -4.15522 1.18320 1.30182 3.06012 3.08830 3.23104 3.32502 3.34879 3.64893 4.29262 4.33709 4.56593 4.76301 4.85694 4.91244 5.16367 5.25278 5.36720 5.46153 5.67844 5.94934 6.06176 6.14652 6.15703 6.28284 6.32682 6.43434 6.57715 6.67759 6.74853 6.92888 7.29986 7.45791 7.75396 7.86818 8.13948 8.50005 8.88099 9.46320 10.97808 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.033683 B = 0.005285 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.080313 B = 5297.239727 C = 5394.405274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.201 4.201 3 C 0.227 3.773 4 H 0.102 0.898 5 N -0.658 5.658 6 C 0.180 3.820 7 H 0.006 0.994 8 C -0.139 4.139 9 C -0.521 4.521 10 H 0.079 0.921 11 C 0.073 3.927 12 N -0.896 5.896 13 Si 0.890 3.110 14 H -0.277 1.277 15 H -0.297 1.297 16 H -0.268 1.268 17 C -0.064 4.064 18 C -0.061 4.061 19 C -0.155 4.155 20 C 0.088 3.912 21 F -0.146 7.146 22 C -0.156 4.156 23 C -0.085 4.085 24 H 0.214 0.786 25 H 0.346 0.654 26 H 0.026 0.974 27 H 0.060 0.940 28 H 0.039 0.961 29 H 0.265 0.735 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.773 -15.231 6.449 16.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.203 4.203 3 C 0.117 3.883 4 H 0.120 0.880 5 N -0.287 5.287 6 C 0.072 3.928 7 H 0.024 0.976 8 C -0.197 4.197 9 C -0.559 4.559 10 H 0.097 0.903 11 C -0.129 4.129 12 N -0.534 5.534 13 Si 0.720 3.280 14 H -0.204 1.204 15 H -0.225 1.225 16 H -0.194 1.194 17 C -0.065 4.065 18 C -0.079 4.079 19 C -0.173 4.173 20 C 0.069 3.931 21 F -0.125 7.125 22 C -0.175 4.175 23 C -0.104 4.104 24 H 0.231 0.769 25 H 0.165 0.835 26 H 0.045 0.955 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.052 -15.179 6.487 16.507 hybrid contribution -0.892 0.585 0.828 1.351 sum -0.944 -14.595 7.315 16.352 Atomic orbital electron populations 1.24868 0.95847 1.00720 1.00690 1.24196 0.95282 1.00207 1.00602 1.17625 0.81740 0.90593 0.98347 0.88022 1.60918 1.54344 1.08384 1.05085 1.19607 0.92729 0.84647 0.95846 0.97622 1.22104 1.00643 0.98308 0.98653 1.21029 1.51114 0.90254 0.93500 0.90288 1.24909 0.94352 0.96887 0.96779 1.69888 1.50083 1.03314 1.30112 0.86820 0.77989 0.77792 0.85383 1.20385 1.22460 1.19369 1.19762 0.98450 0.94874 0.93410 1.20878 0.96246 0.93636 0.97133 1.21132 1.02466 0.95131 0.98619 1.17715 1.00691 0.80297 0.94441 1.91470 1.87020 1.38439 1.95525 1.21014 1.03943 0.97130 0.95400 1.20864 0.97465 0.92893 0.99165 0.76936 0.83459 0.95476 0.92077 0.94280 0.92502 0.84672 0.84897 0.85019 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.03 19.25 29.55 0.57 -2.46 16 2 C -0.20 -3.33 12.21 -37.12 -0.45 -3.79 16 3 C 0.23 3.74 2.47 -71.65 -0.18 3.56 16 4 H 0.10 1.65 6.97 -51.93 -0.36 1.28 16 5 N -0.66 -12.74 5.50 -105.14 -0.58 -13.32 16 6 C 0.18 4.13 2.00 -68.86 -0.14 3.99 16 7 H 0.01 0.15 6.67 -51.93 -0.35 -0.20 16 8 C -0.14 -3.00 8.88 37.16 0.33 -2.67 16 9 C -0.52 -14.19 9.17 -34.44 -0.32 -14.51 16 10 H 0.08 2.32 7.86 -52.49 -0.41 1.91 16 11 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 12 N -0.90 -26.90 13.96 55.43 0.77 -26.12 16 13 Si 0.89 21.67 24.37 -169.99 -4.14 17.53 16 14 H -0.28 -6.57 6.87 56.52 0.39 -6.18 16 15 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.27 -6.30 6.53 56.52 0.37 -5.93 16 17 C -0.06 -0.92 4.92 -104.61 -0.51 -1.44 16 18 C -0.06 -0.84 9.31 -39.59 -0.37 -1.21 16 19 C -0.15 -1.96 10.03 -39.51 -0.40 -2.35 16 20 C 0.09 1.12 7.30 -39.42 -0.29 0.84 16 21 F -0.15 -1.89 17.27 2.25 0.04 -1.85 16 22 C -0.16 -1.84 10.03 -39.51 -0.40 -2.24 16 23 C -0.09 -1.06 9.67 -39.59 -0.38 -1.45 16 24 H 0.21 2.36 7.80 -54.09 -0.42 1.94 16 25 H 0.35 6.77 7.30 -39.29 -0.29 6.49 16 26 H 0.03 0.50 7.43 -51.93 -0.39 0.11 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.04 0.87 3.28 -51.93 -0.17 0.70 16 29 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.14 1.84 7.25 -52.49 -0.38 1.46 16 31 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.13 1.36 8.04 -52.48 -0.42 0.94 16 LS Contribution 287.43 15.07 4.33 4.33 Total: -1.00 -29.82 287.43 -5.84 -35.66 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.64 Total: 5.53 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -2.63 Total: -21.75 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.20 Total: -39.44 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.14 Total: 17.53 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.82 -5.84 -35.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390372802.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.899 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds