Wall clock time and date at job start Mon Mar 30 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 5 5 N 1.46902 * 109.46670 * 130.25924 * 3 2 1 6 6 C 1.46904 * 110.99949 * 85.00489 * 5 3 2 7 7 H 1.08998 * 109.46740 * 324.99371 * 6 5 3 8 8 C 1.52999 * 109.47439 * 84.99497 * 6 5 3 9 9 C 1.50703 * 109.46814 * 204.99919 * 6 5 3 10 10 H 1.07997 * 120.00243 * 359.97438 * 9 6 5 11 11 C 1.37878 * 119.99418 * 179.97438 * 9 6 5 12 12 N 1.31519 * 119.99329 * 179.97438 * 11 9 6 13 13 Si 1.86791 * 120.00463 * 359.97438 * 11 9 6 14 14 H 1.48509 * 109.47258 * 89.99903 * 13 11 9 15 15 H 1.48498 * 109.47371 * 209.99831 * 13 11 9 16 16 H 1.48502 * 109.47211 * 330.00135 * 13 11 9 17 17 C 1.50703 * 109.47167 * 10.26026 * 3 2 1 18 18 C 1.38248 * 119.97021 * 79.72663 * 17 3 2 19 19 C 1.38201 * 120.02194 * 179.72683 * 18 17 3 20 20 C 1.38461 * 119.97175 * 0.52057 * 19 18 17 21 21 F 1.35100 * 120.02698 * 179.72782 * 20 19 18 22 22 C 1.38459 * 119.95101 * 359.75539 * 20 19 18 23 23 C 1.38198 * 119.97534 * 359.97438 * 22 20 19 24 24 H 4.18740 * 15.03805 * 359.97438 * 4 2 1 25 25 H 1.00896 * 111.00544 * 321.04397 * 5 3 2 26 26 H 1.09000 * 109.47120 * 300.00288 * 8 6 5 27 27 H 1.09003 * 109.46927 * 59.99878 * 8 6 5 28 28 H 1.09002 * 109.46876 * 180.02562 * 8 6 5 29 29 H 0.97005 * 119.99453 * 179.97438 * 12 11 9 30 30 H 1.07996 * 119.99115 * 359.97438 * 18 17 3 31 31 H 1.07997 * 120.01901 * 180.25447 * 19 18 17 32 32 H 1.08001 * 120.01419 * 179.97438 * 22 20 19 33 33 H 1.08003 * 119.98865 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.3479 0.9672 5 7 3.1351 0.8960 -1.0570 6 6 3.1974 2.2851 -0.5832 7 1 2.3725 2.4717 0.1044 8 6 4.5259 2.5187 0.1388 9 6 3.0930 3.2220 -1.7590 10 1 2.9911 2.8252 -2.7582 11 6 3.1276 4.5857 -1.5589 12 7 3.0370 5.4033 -2.5851 13 14 3.3032 5.2720 0.1695 14 1 4.7432 5.4384 0.4922 15 1 2.6224 6.5893 0.2506 16 1 2.6836 4.3340 1.1399 17 6 3.1490 -1.3972 -0.2531 18 6 3.1780 -1.8981 -1.5413 19 6 3.6444 -3.1778 -1.7753 20 6 4.0724 -3.9622 -0.7176 21 9 4.5233 -5.2154 -0.9445 22 6 4.0375 -3.4615 0.5728 23 6 3.5760 -2.1795 0.8037 24 1 -1.0500 0.0004 -0.0005 25 1 2.5651 0.8219 -1.8862 26 1 4.6014 1.8411 0.9892 27 1 5.3508 2.3321 -0.5488 28 1 4.5718 3.5494 0.4907 29 1 3.0610 6.3628 -2.4443 30 1 2.8400 -1.2877 -2.3656 31 1 3.6709 -3.5676 -2.7822 32 1 4.3707 -4.0726 1.3986 33 1 3.5490 -1.7886 1.8102 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390372802.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:47 Heat of formation + Delta-G solvation = 22.871284 kcal Electronic energy + Delta-G solvation = -17011.329400 eV Core-core repulsion = 14145.462337 eV Total energy + Delta-G solvation = -2865.867062 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.85989 -40.41645 -38.10560 -35.30261 -33.58858 -32.14514 -32.07901 -30.17896 -27.33126 -26.17944 -23.98988 -22.61654 -21.85916 -19.49779 -18.90052 -18.51605 -17.54502 -17.07914 -16.55986 -16.51139 -15.85528 -15.67027 -15.21903 -14.94872 -14.46898 -14.41235 -14.05455 -13.70574 -13.44664 -13.30516 -12.88639 -12.79517 -12.57676 -12.11766 -11.91865 -11.60807 -11.37250 -11.15352 -11.06924 -10.78583 -10.01257 -9.54643 -9.39750 -8.31943 -6.36647 0.16237 0.33488 1.30958 1.35372 1.45530 1.83323 1.88457 2.30372 2.63001 3.03775 3.31385 3.38091 3.54531 3.82032 3.97274 4.09067 4.26725 4.40413 4.52956 4.59093 4.72054 4.86125 4.95780 5.02671 5.03524 5.08114 5.18342 5.30232 5.47250 5.58903 5.61912 5.92534 5.96495 6.39656 6.54353 6.67779 6.74802 7.29507 8.84463 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.033683 B = 0.005285 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.080313 B = 5297.239727 C = 5394.405274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.243 4.243 3 C 0.231 3.769 4 H 0.107 0.893 5 N -0.658 5.658 6 C 0.187 3.813 7 H -0.001 1.001 8 C -0.137 4.137 9 C -0.523 4.523 10 H 0.041 0.959 11 C 0.016 3.984 12 N -0.945 5.945 13 Si 0.950 3.050 14 H -0.264 1.264 15 H -0.299 1.299 16 H -0.251 1.251 17 C -0.077 4.077 18 C -0.074 4.074 19 C -0.157 4.157 20 C 0.079 3.921 21 F -0.147 7.147 22 C -0.149 4.149 23 C -0.083 4.083 24 H 0.246 0.754 25 H 0.340 0.660 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.032 0.968 29 H 0.267 0.733 30 H 0.127 0.873 31 H 0.147 0.853 32 H 0.159 0.841 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.702 -16.560 8.880 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.245 4.245 3 C 0.121 3.879 4 H 0.124 0.876 5 N -0.287 5.287 6 C 0.077 3.923 7 H 0.016 0.984 8 C -0.194 4.194 9 C -0.562 4.562 10 H 0.059 0.941 11 C -0.182 4.182 12 N -0.585 5.585 13 Si 0.777 3.223 14 H -0.190 1.190 15 H -0.227 1.227 16 H -0.175 1.175 17 C -0.078 4.078 18 C -0.093 4.093 19 C -0.175 4.175 20 C 0.060 3.940 21 F -0.126 7.126 22 C -0.168 4.168 23 C -0.102 4.102 24 H 0.263 0.737 25 H 0.159 0.841 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.145 0.855 31 H 0.165 0.835 32 H 0.176 0.824 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.024 -16.544 8.929 18.800 hybrid contribution -0.978 0.884 -0.015 1.318 sum -0.954 -15.661 8.914 18.045 Atomic orbital electron populations 1.25742 0.96809 0.99059 0.98844 1.24448 0.95968 1.01808 1.02295 1.17600 0.82107 0.90958 0.97237 0.87573 1.60858 1.54992 1.06948 1.05892 1.19408 0.93356 0.85643 0.93851 0.98359 1.22018 0.99116 0.98731 0.99559 1.21336 1.49969 0.91281 0.93587 0.94110 1.25765 0.94201 0.97310 1.00900 1.70037 1.52127 1.03700 1.32650 0.85828 0.78719 0.77063 0.80642 1.18973 1.22675 1.17467 1.19703 0.99667 0.94211 0.94246 1.20882 0.97140 0.94218 0.97034 1.21265 1.02018 0.94677 0.99585 1.17898 1.00832 0.80288 0.95015 1.91469 1.87047 1.38503 1.95588 1.21297 1.02730 0.97017 0.95739 1.21092 0.96572 0.92852 0.99659 0.73723 0.84140 0.92050 0.92768 0.94940 0.92438 0.85458 0.83513 0.82357 0.82848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.19 19.25 74.32 1.43 -3.76 16 2 C -0.24 -7.76 12.21 31.13 0.38 -7.38 16 3 C 0.23 7.29 2.47 42.37 0.10 7.39 16 4 H 0.11 3.19 6.97 -2.39 -0.02 3.18 16 5 N -0.66 -25.40 5.50 -486.57 -2.68 -28.07 16 6 C 0.19 8.43 2.00 44.17 0.09 8.52 16 7 H 0.00 -0.05 6.67 -2.39 -0.02 -0.07 16 8 C -0.14 -5.60 8.88 71.98 0.64 -4.96 16 9 C -0.52 -29.15 9.17 25.60 0.23 -28.92 16 10 H 0.04 2.51 7.86 -2.91 -0.02 2.49 16 11 C 0.02 0.93 5.45 84.65 0.46 1.39 16 12 N -0.95 -58.27 13.96 21.45 0.30 -57.97 16 13 Si 0.95 44.21 24.37 68.60 1.67 45.88 16 14 H -0.26 -11.65 6.87 99.48 0.68 -10.96 16 15 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 16 H -0.25 -10.84 6.53 99.48 0.65 -10.19 16 17 C -0.08 -2.12 4.92 -19.86 -0.10 -2.21 16 18 C -0.07 -2.01 9.31 22.26 0.21 -1.81 16 19 C -0.16 -3.79 10.03 22.31 0.22 -3.56 16 20 C 0.08 1.86 7.30 22.38 0.16 2.02 16 21 F -0.15 -3.53 17.27 44.97 0.78 -2.76 16 22 C -0.15 -3.09 10.03 22.31 0.22 -2.87 16 23 C -0.08 -1.85 9.67 22.26 0.22 -1.64 16 24 H 0.25 4.70 7.80 -4.42 -0.03 4.67 16 25 H 0.34 13.70 7.30 -89.70 -0.65 13.05 16 26 H 0.06 2.08 7.43 -2.39 -0.02 2.06 16 27 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.03 1.36 3.28 -2.39 -0.01 1.36 16 29 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 30 H 0.13 3.55 7.25 -2.91 -0.02 3.53 16 31 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 32 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.15 2.64 8.04 -2.91 -0.02 2.61 16 Total: -1.00 -64.68 287.43 4.73 -59.95 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.39 Total: 20.76 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 4.27 Total: -37.79 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -2.38 Total: -86.04 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.67 Total: 45.88 kcal Total: -64.68 4.73 -59.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390372802.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.821 kcal (2) G-P(sol) polarization free energy of solvation -64.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds