Wall clock time and date at job start Mon Mar 30 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09007 * 109.47067 * 182.11441 * 3 2 1 5 5 N 1.46896 * 109.47292 * 302.11527 * 3 2 1 6 6 C 1.46904 * 111.00107 * 275.00243 * 5 3 2 7 7 H 1.09007 * 109.46566 * 324.99944 * 6 5 3 8 8 C 1.52998 * 109.47027 * 84.99918 * 6 5 3 9 9 C 1.50701 * 109.47195 * 205.00268 * 6 5 3 10 10 H 1.08002 * 119.99761 * 359.97438 * 9 6 5 11 11 C 1.37871 * 119.99694 * 180.27796 * 9 6 5 12 12 N 1.31514 * 120.00482 * 359.71466 * 11 9 6 13 13 Si 1.86801 * 119.99746 * 179.72062 * 11 9 6 14 14 H 1.48504 * 109.47266 * 60.00049 * 13 11 9 15 15 H 1.48504 * 109.46970 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47383 * 299.99456 * 13 11 9 17 17 C 1.50701 * 109.47402 * 62.11783 * 3 2 1 18 18 C 1.38250 * 119.97244 * 279.72774 * 17 3 2 19 19 C 1.38196 * 120.02503 * 179.72639 * 18 17 3 20 20 C 1.38461 * 119.97391 * 0.51727 * 19 18 17 21 21 F 1.35103 * 120.02601 * 179.72612 * 20 19 18 22 22 C 1.38462 * 119.95008 * 359.75704 * 20 19 18 23 23 C 1.38196 * 119.97212 * 359.97438 * 22 20 19 24 24 H 4.18743 * 15.03961 * 359.97438 * 4 2 1 25 25 H 1.00893 * 111.00203 * 38.95385 * 5 3 2 26 26 H 1.09004 * 109.46783 * 180.02562 * 8 6 5 27 27 H 1.09005 * 109.46870 * 300.00063 * 8 6 5 28 28 H 1.08998 * 109.47156 * 60.00002 * 8 6 5 29 29 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 30 30 H 1.07999 * 119.98515 * 359.96938 * 18 17 3 31 31 H 1.08001 * 120.01646 * 180.25142 * 19 18 17 32 32 H 1.07991 * 120.01582 * 179.97438 * 22 20 19 33 33 H 1.08000 * 119.98827 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 1.0279 0.0379 5 7 3.1360 -0.7354 1.1730 6 6 3.1984 0.1367 2.3535 7 1 3.4803 1.1440 2.0465 8 6 1.8277 0.1752 3.0321 9 6 4.2228 -0.3990 3.3203 10 1 4.7722 -1.2977 3.0818 11 6 4.4540 0.2547 4.5120 12 7 3.7847 1.3489 4.8025 13 14 5.7182 -0.4137 5.7138 14 1 7.0513 -0.4508 5.0604 15 1 5.7778 0.4653 6.9093 16 1 5.3311 -1.7864 6.1271 17 6 3.1487 -0.6636 -1.2559 18 6 3.1888 -2.0430 -1.3390 19 6 3.6443 -2.6532 -2.4923 20 6 4.0706 -1.8826 -3.5607 21 9 4.5213 -2.4781 -4.6865 22 6 4.0353 -0.5011 -3.4741 23 6 3.5742 0.1069 -2.3219 24 1 -1.0500 -0.0010 -0.0005 25 1 2.5663 -1.5483 1.3538 26 1 1.8739 0.8227 3.9078 27 1 1.0868 0.5627 2.3328 28 1 1.5458 -0.8320 3.3390 29 1 3.9472 1.8086 5.6410 30 1 2.8603 -2.6438 -0.5039 31 1 3.6717 -3.7309 -2.5586 32 1 4.3680 0.1010 -4.3066 33 1 3.5470 1.1844 -2.2540 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390372805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:55 Heat of formation + Delta-G solvation = 35.187499 kcal Electronic energy + Delta-G solvation = -16963.332754 eV Core-core repulsion = 14097.999763 eV Total energy + Delta-G solvation = -2865.332991 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.80708 -39.24911 -36.55762 -33.51231 -31.60250 -31.03144 -30.75352 -27.97797 -25.19639 -24.69712 -22.90641 -21.47804 -20.30176 -18.14382 -17.59944 -16.59674 -16.14847 -15.50907 -15.34605 -14.79478 -14.70902 -14.08723 -13.76911 -13.39630 -12.94026 -12.76718 -12.27139 -11.97015 -11.92445 -11.55833 -11.10590 -10.90017 -10.88216 -10.80546 -10.19858 -10.12276 -9.97616 -9.76492 -9.00103 -8.97457 -8.43139 -8.38212 -7.54891 -6.01256 -4.05307 1.26178 1.37472 3.12941 3.16188 3.33321 3.37355 3.40849 3.72562 4.35890 4.41296 4.66064 4.84192 4.95375 5.02513 5.30207 5.35515 5.44928 5.60117 5.80544 6.03563 6.14738 6.21779 6.22343 6.38977 6.68704 6.71404 6.86960 7.00111 7.05041 7.24629 7.70238 7.81393 7.92740 8.17913 8.36869 8.50201 9.00689 9.59915 11.05468 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.025915 B = 0.005479 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.176816 B = 5109.026194 C = 5786.077730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.189 4.189 3 C 0.227 3.773 4 H 0.104 0.896 5 N -0.662 5.662 6 C 0.211 3.789 7 H 0.036 0.964 8 C -0.172 4.172 9 C -0.498 4.498 10 H 0.063 0.937 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.899 3.101 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.278 1.278 17 C -0.062 4.062 18 C -0.061 4.061 19 C -0.156 4.156 20 C 0.086 3.914 21 F -0.147 7.147 22 C -0.156 4.156 23 C -0.085 4.085 24 H 0.211 0.789 25 H 0.332 0.668 26 H 0.088 0.912 27 H 0.014 0.986 28 H 0.026 0.974 29 H 0.261 0.739 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.425 -3.471 -13.087 13.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.191 4.191 3 C 0.117 3.883 4 H 0.122 0.878 5 N -0.290 5.290 6 C 0.104 3.896 7 H 0.054 0.946 8 C -0.231 4.231 9 C -0.537 4.537 10 H 0.081 0.919 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.727 3.273 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.204 1.204 17 C -0.063 4.063 18 C -0.080 4.080 19 C -0.175 4.175 20 C 0.067 3.933 21 F -0.125 7.125 22 C -0.175 4.175 23 C -0.103 4.103 24 H 0.228 0.772 25 H 0.150 0.850 26 H 0.107 0.893 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.698 -3.268 -13.107 13.775 hybrid contribution -0.452 -0.304 0.812 0.978 sum -3.150 -3.572 -12.294 13.185 Atomic orbital electron populations 1.24796 0.95785 1.01316 1.01520 1.24275 0.95301 1.00021 0.99475 1.17676 0.81562 0.98746 0.90354 0.87833 1.61193 1.53355 1.09472 1.04987 1.19300 0.92929 0.92033 0.85321 0.94627 1.22489 0.97607 1.00380 1.02612 1.21073 1.20249 1.11001 1.01347 0.91892 1.24930 0.96403 0.95041 0.98000 1.69871 1.41410 1.17960 1.24336 0.86555 0.81885 0.78674 0.80221 1.20250 1.21453 1.20371 1.19820 0.98154 0.93749 0.94548 1.20845 0.96473 0.94330 0.96329 1.21109 1.02750 1.00392 0.93237 1.17706 1.00858 0.91291 0.83462 1.91465 1.87052 1.84269 1.49756 1.21015 1.03914 0.92708 0.99824 1.20889 0.97305 1.00242 0.91889 0.77167 0.85025 0.89345 0.96716 0.95525 0.92960 0.84859 0.85036 0.85048 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.23 18.81 29.55 0.56 -2.67 16 2 C -0.19 -3.16 10.57 -37.12 -0.39 -3.55 16 3 C 0.23 3.92 2.65 -71.66 -0.19 3.73 16 4 H 0.10 1.84 7.29 -51.92 -0.38 1.46 16 5 N -0.66 -13.32 5.48 -105.15 -0.58 -13.89 16 6 C 0.21 5.12 2.58 -68.86 -0.18 4.94 16 7 H 0.04 0.94 7.43 -51.93 -0.39 0.56 16 8 C -0.17 -4.05 8.69 37.16 0.32 -3.73 16 9 C -0.50 -13.42 8.84 -34.44 -0.30 -13.72 16 10 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 11 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 12 N -0.90 -25.21 11.31 55.43 0.63 -24.59 16 13 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 C -0.06 -0.94 4.92 -104.61 -0.51 -1.45 16 18 C -0.06 -0.88 9.31 -39.59 -0.37 -1.25 16 19 C -0.16 -2.06 10.03 -39.51 -0.40 -2.45 16 20 C 0.09 1.15 7.30 -39.42 -0.29 0.87 16 21 F -0.15 -1.98 17.27 2.25 0.04 -1.94 16 22 C -0.16 -1.96 10.03 -39.51 -0.40 -2.36 16 23 C -0.08 -1.13 9.67 -39.59 -0.38 -1.52 16 24 H 0.21 2.36 7.80 -54.09 -0.42 1.94 16 25 H 0.33 6.42 7.54 -39.30 -0.30 6.12 16 26 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 27 H 0.01 0.31 5.91 -51.93 -0.31 0.00 16 28 H 0.03 0.60 8.13 -51.93 -0.42 0.18 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.13 1.85 7.23 -52.49 -0.38 1.47 16 31 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.13 1.51 8.04 -52.49 -0.42 1.08 16 LS Contribution 291.26 15.07 4.39 4.39 Total: -1.00 -28.46 291.26 -6.89 -35.35 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -3.72 Total: 6.20 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -2.63 Total: -21.71 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.05 Total: -38.48 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.46 -6.89 -35.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390372805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.538 kcal (2) G-P(sol) polarization free energy of solvation -28.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds