Wall clock time and date at job start Mon Mar 30 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09007 * 109.47067 * 182.11441 * 3 2 1 5 5 N 1.46896 * 109.47292 * 302.11527 * 3 2 1 6 6 C 1.46904 * 111.00107 * 275.00243 * 5 3 2 7 7 H 1.09007 * 109.46566 * 324.99944 * 6 5 3 8 8 C 1.52998 * 109.47027 * 84.99918 * 6 5 3 9 9 C 1.50701 * 109.47195 * 205.00268 * 6 5 3 10 10 H 1.08002 * 119.99761 * 359.97438 * 9 6 5 11 11 C 1.37871 * 119.99694 * 180.27796 * 9 6 5 12 12 N 1.31514 * 120.00482 * 359.71466 * 11 9 6 13 13 Si 1.86801 * 119.99746 * 179.72062 * 11 9 6 14 14 H 1.48504 * 109.47266 * 60.00049 * 13 11 9 15 15 H 1.48504 * 109.46970 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47383 * 299.99456 * 13 11 9 17 17 C 1.50701 * 109.47402 * 62.11783 * 3 2 1 18 18 C 1.38250 * 119.97244 * 279.72774 * 17 3 2 19 19 C 1.38196 * 120.02503 * 179.72639 * 18 17 3 20 20 C 1.38461 * 119.97391 * 0.51727 * 19 18 17 21 21 F 1.35103 * 120.02601 * 179.72612 * 20 19 18 22 22 C 1.38462 * 119.95008 * 359.75704 * 20 19 18 23 23 C 1.38196 * 119.97212 * 359.97438 * 22 20 19 24 24 H 4.18743 * 15.03961 * 359.97438 * 4 2 1 25 25 H 1.00893 * 111.00203 * 38.95385 * 5 3 2 26 26 H 1.09004 * 109.46783 * 180.02562 * 8 6 5 27 27 H 1.09005 * 109.46870 * 300.00063 * 8 6 5 28 28 H 1.08998 * 109.47156 * 60.00002 * 8 6 5 29 29 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 30 30 H 1.07999 * 119.98515 * 359.96938 * 18 17 3 31 31 H 1.08001 * 120.01646 * 180.25142 * 19 18 17 32 32 H 1.07991 * 120.01582 * 179.97438 * 22 20 19 33 33 H 1.08000 * 119.98827 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 1.0279 0.0379 5 7 3.1360 -0.7354 1.1730 6 6 3.1984 0.1367 2.3535 7 1 3.4803 1.1440 2.0465 8 6 1.8277 0.1752 3.0321 9 6 4.2228 -0.3990 3.3203 10 1 4.7722 -1.2977 3.0818 11 6 4.4540 0.2547 4.5120 12 7 3.7847 1.3489 4.8025 13 14 5.7182 -0.4137 5.7138 14 1 7.0513 -0.4508 5.0604 15 1 5.7778 0.4653 6.9093 16 1 5.3311 -1.7864 6.1271 17 6 3.1487 -0.6636 -1.2559 18 6 3.1888 -2.0430 -1.3390 19 6 3.6443 -2.6532 -2.4923 20 6 4.0706 -1.8826 -3.5607 21 9 4.5213 -2.4781 -4.6865 22 6 4.0353 -0.5011 -3.4741 23 6 3.5742 0.1069 -2.3219 24 1 -1.0500 -0.0010 -0.0005 25 1 2.5663 -1.5483 1.3538 26 1 1.8739 0.8227 3.9078 27 1 1.0868 0.5627 2.3328 28 1 1.5458 -0.8320 3.3390 29 1 3.9472 1.8086 5.6410 30 1 2.8603 -2.6438 -0.5039 31 1 3.6717 -3.7309 -2.5586 32 1 4.3680 0.1010 -4.3066 33 1 3.5470 1.1844 -2.2540 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390372805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:53 Heat of formation + Delta-G solvation = 19.684510 kcal Electronic energy + Delta-G solvation = -16964.005014 eV Core-core repulsion = 14097.999763 eV Total energy + Delta-G solvation = -2866.005251 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -49.85331 -40.39813 -38.07526 -35.25840 -33.20620 -32.11375 -32.04559 -29.55813 -27.20496 -26.12877 -23.99528 -22.62651 -22.13550 -19.41722 -18.75127 -18.30531 -17.32498 -16.87447 -16.56743 -16.48865 -16.05425 -15.33153 -15.18797 -14.55239 -14.40895 -14.19078 -13.70273 -13.55291 -13.33793 -13.07298 -12.83643 -12.72132 -12.59162 -12.16114 -11.96144 -11.90506 -11.39490 -11.32512 -10.78084 -10.46674 -10.00555 -9.52682 -9.20381 -8.08356 -6.19591 0.17610 0.34172 1.45257 1.46446 1.54041 1.87514 1.93132 2.45602 2.64640 3.20275 3.31769 3.45045 3.64487 3.83023 3.99457 4.14911 4.31079 4.41648 4.60878 4.76259 4.94209 4.99405 5.04424 5.09275 5.11079 5.18412 5.30786 5.38666 5.61988 5.69939 5.81852 5.96040 6.25272 6.57056 6.68035 6.72389 6.92869 7.49826 8.96760 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.025915 B = 0.005479 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.176816 B = 5109.026194 C = 5786.077730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.233 4.233 3 C 0.232 3.768 4 H 0.090 0.910 5 N -0.663 5.663 6 C 0.218 3.782 7 H 0.006 0.994 8 C -0.156 4.156 9 C -0.516 4.516 10 H 0.056 0.944 11 C 0.011 3.989 12 N -0.921 5.921 13 Si 0.959 3.041 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.272 1.272 17 C -0.077 4.077 18 C -0.072 4.072 19 C -0.155 4.155 20 C 0.078 3.922 21 F -0.147 7.147 22 C -0.150 4.150 23 C -0.089 4.089 24 H 0.247 0.753 25 H 0.336 0.664 26 H 0.059 0.941 27 H 0.031 0.969 28 H 0.027 0.973 29 H 0.261 0.739 30 H 0.133 0.867 31 H 0.151 0.849 32 H 0.157 0.843 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 -4.144 -14.001 15.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.235 4.235 3 C 0.122 3.878 4 H 0.108 0.892 5 N -0.291 5.291 6 C 0.110 3.890 7 H 0.024 0.976 8 C -0.215 4.215 9 C -0.554 4.554 10 H 0.075 0.925 11 C -0.187 4.187 12 N -0.561 5.561 13 Si 0.785 3.215 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.197 1.197 17 C -0.078 4.078 18 C -0.090 4.090 19 C -0.173 4.173 20 C 0.059 3.941 21 F -0.125 7.125 22 C -0.169 4.169 23 C -0.107 4.107 24 H 0.264 0.736 25 H 0.154 0.846 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.151 0.849 31 H 0.169 0.831 32 H 0.175 0.825 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.953 -3.951 -14.042 14.883 hybrid contribution -0.431 -0.087 1.006 1.098 sum -3.383 -4.038 -13.036 14.060 Atomic orbital electron populations 1.25665 0.96625 0.99145 0.99311 1.24307 0.95665 1.02021 1.01491 1.17508 0.82478 0.97861 0.89969 0.89231 1.61017 1.54452 1.09222 1.04380 1.19015 0.92550 0.91034 0.86403 0.97583 1.22282 0.97870 0.99713 1.01653 1.21394 1.20956 1.10860 1.02231 0.92528 1.25675 0.98149 0.95285 0.99622 1.70000 1.42557 1.18894 1.24699 0.85597 0.79566 0.78224 0.78107 1.19954 1.21105 1.19709 1.19757 0.99480 0.94305 0.94260 1.20886 0.97137 0.94094 0.96924 1.21284 1.01952 1.01481 0.92626 1.17878 1.00938 0.91777 0.83515 1.91468 1.87054 1.84316 1.49711 1.21268 1.02797 0.92695 1.00117 1.21075 0.96920 1.01054 0.91651 0.73650 0.84578 0.92182 0.95017 0.95428 0.93019 0.84934 0.83126 0.82538 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.25 18.81 74.32 1.40 -3.85 16 2 C -0.23 -7.60 10.57 31.12 0.33 -7.27 16 3 C 0.23 8.05 2.65 42.36 0.11 8.16 16 4 H 0.09 3.29 7.29 -2.38 -0.02 3.27 16 5 N -0.66 -26.96 5.48 -486.58 -2.67 -29.63 16 6 C 0.22 10.78 2.58 44.17 0.11 10.90 16 7 H 0.01 0.34 7.43 -2.38 -0.02 0.32 16 8 C -0.16 -7.42 8.69 71.98 0.63 -6.79 16 9 C -0.52 -28.16 8.84 25.60 0.23 -27.93 16 10 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 11 C 0.01 0.60 5.30 84.65 0.45 1.05 16 12 N -0.92 -52.57 11.31 21.45 0.24 -52.33 16 13 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 14 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 15 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 C -0.08 -2.31 4.92 -19.86 -0.10 -2.40 16 18 C -0.07 -2.02 9.31 22.26 0.21 -1.81 16 19 C -0.15 -3.84 10.03 22.31 0.22 -3.62 16 20 C 0.08 1.95 7.30 22.38 0.16 2.11 16 21 F -0.15 -3.67 17.27 44.97 0.78 -2.89 16 22 C -0.15 -3.47 10.03 22.31 0.22 -3.25 16 23 C -0.09 -2.26 9.67 22.26 0.22 -2.05 16 24 H 0.25 4.61 7.80 -4.42 -0.03 4.58 16 25 H 0.34 13.04 7.54 -89.70 -0.68 12.36 16 26 H 0.06 3.21 6.06 -2.38 -0.01 3.20 16 27 H 0.03 1.35 5.91 -2.38 -0.01 1.34 16 28 H 0.03 1.25 8.13 -2.39 -0.02 1.23 16 29 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.13 3.63 7.23 -2.91 -0.02 3.61 16 31 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 32 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 33 H 0.15 3.19 8.04 -2.91 -0.02 3.17 16 Total: -1.00 -60.49 291.26 5.01 -55.48 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.44 Total: 20.52 kcal Atomic # 6 Polarization: -40.95 SS G_CDS: 4.19 Total: -36.76 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -2.42 Total: -81.96 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.78 Total: -2.89 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -60.49 5.01 -55.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390372805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.168 kcal (2) G-P(sol) polarization free energy of solvation -60.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds