Wall clock time and date at job start Mon Mar 30 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.09006 * 109.46798 * 169.26335 * 3 2 1 5 5 N 1.46895 * 109.47255 * 289.25801 * 3 2 1 6 6 C 1.46902 * 111.00561 * 275.00231 * 5 3 2 7 7 H 1.09002 * 109.46719 * 34.99912 * 6 5 3 8 8 C 1.52997 * 109.47094 * 275.00137 * 6 5 3 9 9 C 1.50697 * 109.47181 * 154.99698 * 6 5 3 10 10 H 1.07999 * 120.00055 * 0.02562 * 9 6 5 11 11 C 1.37878 * 119.99687 * 180.02562 * 9 6 5 12 12 N 1.31511 * 120.00458 * 359.97438 * 11 9 6 13 13 Si 1.86805 * 119.99926 * 180.02562 * 11 9 6 14 14 H 1.48506 * 109.46872 * 59.99743 * 13 11 9 15 15 H 1.48503 * 109.47008 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.46914 * 299.99916 * 13 11 9 17 17 C 1.50703 * 109.47290 * 49.26356 * 3 2 1 18 18 C 1.38246 * 119.97262 * 279.72090 * 17 3 2 19 19 C 1.38191 * 120.02683 * 179.76842 * 18 17 3 20 20 C 1.38461 * 119.97439 * 0.50571 * 19 18 17 21 21 F 1.35096 * 120.03165 * 179.76531 * 20 19 18 22 22 C 1.38465 * 119.94419 * 359.75134 * 20 19 18 23 23 C 1.38201 * 119.97816 * 359.97438 * 22 20 19 24 24 H 4.18738 * 15.04012 * 359.97438 * 4 2 1 25 25 H 1.00906 * 111.00234 * 151.04647 * 5 3 2 26 26 H 1.09002 * 109.47153 * 299.99508 * 8 6 5 27 27 H 1.09001 * 109.46832 * 179.97438 * 8 6 5 28 28 H 1.09004 * 109.47261 * 59.99681 * 8 6 5 29 29 H 0.96999 * 120.00480 * 179.97438 * 12 11 9 30 30 H 1.08001 * 119.98488 * 0.02562 * 18 17 3 31 31 H 1.07998 * 120.01616 * 180.25537 * 19 18 17 32 32 H 1.08008 * 120.01119 * 179.97438 * 22 20 19 33 33 H 1.07996 * 119.98561 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0088 1.0106 -0.1915 5 7 3.1359 -0.4559 1.3074 6 6 3.1982 0.6570 2.2643 7 1 2.3730 1.3440 2.0767 8 6 4.5264 1.3980 2.0989 9 6 3.0945 0.1188 3.6681 10 1 2.9930 -0.9437 3.8330 11 6 3.1294 0.9829 4.7419 12 7 3.2535 2.2767 4.5412 13 14 3.0016 0.3158 6.4821 14 1 4.1265 -0.6194 6.7375 15 1 3.0645 1.4409 7.4494 16 1 1.7129 -0.4043 6.6428 17 6 3.1488 -0.9263 -1.0766 18 6 3.1890 -2.2896 -0.8508 19 6 3.6453 -3.1411 -1.8389 20 6 4.0723 -2.6274 -3.0518 21 9 4.5231 -3.4584 -4.0169 22 6 4.0365 -1.2613 -3.2748 23 6 3.5744 -0.4122 -2.2872 24 1 -1.0500 -0.0011 -0.0003 25 1 4.0338 -0.9078 1.2195 26 1 5.3516 0.7110 2.2865 27 1 4.5724 2.2240 2.8087 28 1 4.6014 1.7873 1.0835 29 1 3.2776 2.8846 5.2967 30 1 2.8597 -2.6897 0.0968 31 1 3.6728 -4.2064 -1.6638 32 1 4.3697 -0.8594 -4.2204 33 1 3.5461 0.6533 -2.4612 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390372811.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:01 Heat of formation + Delta-G solvation = 35.278303 kcal Electronic energy + Delta-G solvation = -16949.161984 eV Core-core repulsion = 14083.832931 eV Total energy + Delta-G solvation = -2865.329054 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.89693 -39.35825 -36.40674 -33.53092 -31.67234 -31.11493 -30.63799 -27.94088 -25.27898 -24.70396 -22.97406 -21.61626 -20.35760 -17.78579 -17.49957 -16.64396 -16.28818 -15.59150 -15.44119 -14.76138 -14.44107 -14.07604 -13.95384 -13.50186 -13.10470 -12.95721 -12.31500 -11.98699 -11.94763 -11.59183 -11.02496 -10.93867 -10.88065 -10.67654 -10.21771 -10.12619 -9.76954 -9.65136 -9.08602 -9.05866 -8.55883 -8.37649 -7.46412 -6.00326 -4.03645 1.13607 1.27056 3.31509 3.33719 3.33977 3.37884 3.41882 3.64129 4.26510 4.42716 4.71399 4.80324 4.87739 5.06920 5.26662 5.31763 5.36937 5.60193 5.83064 5.95604 6.04382 6.13343 6.28872 6.41008 6.58979 6.64658 6.78134 6.91034 7.01829 7.27308 7.68994 7.82864 8.12644 8.22879 8.42492 8.52234 9.02172 9.61331 11.06864 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.032471 B = 0.005020 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.100247 B = 5576.049478 C = 5724.773460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.145 4.145 3 C 0.231 3.769 4 H 0.069 0.931 5 N -0.672 5.672 6 C 0.211 3.789 7 H 0.037 0.963 8 C -0.170 4.170 9 C -0.495 4.495 10 H 0.062 0.938 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.898 3.102 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.277 1.277 17 C -0.087 4.087 18 C -0.063 4.063 19 C -0.156 4.156 20 C 0.090 3.910 21 F -0.145 7.145 22 C -0.157 4.157 23 C -0.082 4.082 24 H 0.212 0.788 25 H 0.335 0.665 26 H 0.030 0.970 27 H 0.091 0.909 28 H 0.005 0.995 29 H 0.260 0.740 30 H 0.146 0.854 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.430 -5.782 -13.205 14.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.146 4.146 3 C 0.121 3.879 4 H 0.086 0.914 5 N -0.303 5.303 6 C 0.104 3.896 7 H 0.055 0.945 8 C -0.230 4.230 9 C -0.534 4.534 10 H 0.081 0.919 11 C -0.144 4.144 12 N -0.537 5.537 13 Si 0.727 3.273 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.203 1.203 17 C -0.088 4.088 18 C -0.082 4.082 19 C -0.175 4.175 20 C 0.071 3.929 21 F -0.124 7.124 22 C -0.176 4.176 23 C -0.101 4.101 24 H 0.229 0.771 25 H 0.154 0.846 26 H 0.049 0.951 27 H 0.109 0.891 28 H 0.024 0.976 29 H 0.070 0.930 30 H 0.163 0.837 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.134 -5.850 -12.899 14.164 hybrid contribution 0.605 0.129 0.488 0.788 sum 0.470 -5.721 -12.411 13.674 Atomic orbital electron populations 1.24656 0.95633 1.02016 1.01352 1.22737 0.93704 0.99098 0.99086 1.17199 0.85303 0.95911 0.89443 0.91369 1.60854 1.32580 1.32036 1.04869 1.19255 0.93225 0.86885 0.90227 0.94536 1.22457 0.99455 1.02919 0.98145 1.21052 1.48874 0.93886 0.89549 0.91937 1.24933 0.95444 0.94847 0.99205 1.69864 1.50963 1.01872 1.30988 0.86555 0.78636 0.78237 0.83910 1.20349 1.21456 1.20299 1.20006 0.99161 0.94575 0.95023 1.21071 0.95723 0.92279 0.99087 1.21173 1.02574 1.01135 0.92619 1.17751 1.00409 0.87977 0.86745 1.91473 1.86956 1.71681 1.62267 1.21043 1.03996 0.91568 1.00996 1.20943 0.97001 1.00039 0.92122 0.77096 0.84583 0.95117 0.89054 0.97570 0.92974 0.83660 0.84804 0.84935 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.67 19.25 29.55 0.57 -3.10 16 2 C -0.15 -2.70 12.49 -37.12 -0.46 -3.16 16 3 C 0.23 4.09 2.49 -71.65 -0.18 3.91 16 4 H 0.07 1.22 6.97 -51.93 -0.36 0.86 16 5 N -0.67 -13.68 5.38 -105.15 -0.57 -14.24 16 6 C 0.21 5.17 2.37 -68.87 -0.16 5.00 16 7 H 0.04 1.00 7.62 -51.93 -0.40 0.61 16 8 C -0.17 -3.96 8.92 37.16 0.33 -3.63 16 9 C -0.49 -13.45 8.84 -34.44 -0.30 -13.75 16 10 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 11 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 12 N -0.90 -25.37 11.32 55.43 0.63 -24.74 16 13 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 C -0.09 -1.29 4.68 -104.62 -0.49 -1.78 16 18 C -0.06 -0.89 8.99 -39.60 -0.36 -1.24 16 19 C -0.16 -1.96 10.03 -39.52 -0.40 -2.36 16 20 C 0.09 1.15 7.30 -39.42 -0.29 0.86 16 21 F -0.15 -1.87 17.27 2.25 0.04 -1.83 16 22 C -0.16 -1.87 10.03 -39.51 -0.40 -2.27 16 23 C -0.08 -1.05 9.67 -39.59 -0.38 -1.44 16 24 H 0.21 2.69 7.80 -54.09 -0.42 2.27 16 25 H 0.34 6.38 7.72 -39.29 -0.30 6.08 16 26 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 28 H 0.01 0.11 7.43 -51.93 -0.39 -0.27 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.15 2.09 7.71 -52.49 -0.40 1.69 16 31 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.13 1.45 8.04 -52.49 -0.42 1.03 16 LS Contribution 294.91 15.07 4.44 4.44 Total: -1.00 -28.89 294.91 -6.91 -35.80 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -3.82 Total: 5.76 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -2.61 Total: -21.49 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.06 Total: -38.98 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.89 -6.91 -35.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390372811.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.079 kcal (2) G-P(sol) polarization free energy of solvation -28.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds