Wall clock time and date at job start Mon Mar 30 2020 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.09006 * 109.46798 * 169.26335 * 3 2 1 5 5 N 1.46895 * 109.47255 * 289.25801 * 3 2 1 6 6 C 1.46902 * 111.00561 * 275.00231 * 5 3 2 7 7 H 1.09002 * 109.46719 * 34.99912 * 6 5 3 8 8 C 1.52997 * 109.47094 * 275.00137 * 6 5 3 9 9 C 1.50697 * 109.47181 * 154.99698 * 6 5 3 10 10 H 1.07999 * 120.00055 * 0.02562 * 9 6 5 11 11 C 1.37878 * 119.99687 * 180.02562 * 9 6 5 12 12 N 1.31511 * 120.00458 * 359.97438 * 11 9 6 13 13 Si 1.86805 * 119.99926 * 180.02562 * 11 9 6 14 14 H 1.48506 * 109.46872 * 59.99743 * 13 11 9 15 15 H 1.48503 * 109.47008 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.46914 * 299.99916 * 13 11 9 17 17 C 1.50703 * 109.47290 * 49.26356 * 3 2 1 18 18 C 1.38246 * 119.97262 * 279.72090 * 17 3 2 19 19 C 1.38191 * 120.02683 * 179.76842 * 18 17 3 20 20 C 1.38461 * 119.97439 * 0.50571 * 19 18 17 21 21 F 1.35096 * 120.03165 * 179.76531 * 20 19 18 22 22 C 1.38465 * 119.94419 * 359.75134 * 20 19 18 23 23 C 1.38201 * 119.97816 * 359.97438 * 22 20 19 24 24 H 4.18738 * 15.04012 * 359.97438 * 4 2 1 25 25 H 1.00906 * 111.00234 * 151.04647 * 5 3 2 26 26 H 1.09002 * 109.47153 * 299.99508 * 8 6 5 27 27 H 1.09001 * 109.46832 * 179.97438 * 8 6 5 28 28 H 1.09004 * 109.47261 * 59.99681 * 8 6 5 29 29 H 0.96999 * 120.00480 * 179.97438 * 12 11 9 30 30 H 1.08001 * 119.98488 * 0.02562 * 18 17 3 31 31 H 1.07998 * 120.01616 * 180.25537 * 19 18 17 32 32 H 1.08008 * 120.01119 * 179.97438 * 22 20 19 33 33 H 1.07996 * 119.98561 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0088 1.0106 -0.1915 5 7 3.1359 -0.4559 1.3074 6 6 3.1982 0.6570 2.2643 7 1 2.3730 1.3440 2.0767 8 6 4.5264 1.3980 2.0989 9 6 3.0945 0.1188 3.6681 10 1 2.9930 -0.9437 3.8330 11 6 3.1294 0.9829 4.7419 12 7 3.2535 2.2767 4.5412 13 14 3.0016 0.3158 6.4821 14 1 4.1265 -0.6194 6.7375 15 1 3.0645 1.4409 7.4494 16 1 1.7129 -0.4043 6.6428 17 6 3.1488 -0.9263 -1.0766 18 6 3.1890 -2.2896 -0.8508 19 6 3.6453 -3.1411 -1.8389 20 6 4.0723 -2.6274 -3.0518 21 9 4.5231 -3.4584 -4.0169 22 6 4.0365 -1.2613 -3.2748 23 6 3.5744 -0.4122 -2.2872 24 1 -1.0500 -0.0011 -0.0003 25 1 4.0338 -0.9078 1.2195 26 1 5.3516 0.7110 2.2865 27 1 4.5724 2.2240 2.8087 28 1 4.6014 1.7873 1.0835 29 1 3.2776 2.8846 5.2967 30 1 2.8597 -2.6897 0.0968 31 1 3.6728 -4.2064 -1.6638 32 1 4.3697 -0.8594 -4.2204 33 1 3.5461 0.6533 -2.4612 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390372811.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:00 Heat of formation + Delta-G solvation = 19.416100 kcal Electronic energy + Delta-G solvation = -16949.849821 eV Core-core repulsion = 14083.832931 eV Total energy + Delta-G solvation = -2866.016890 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.89163 -40.47911 -37.95003 -35.26514 -33.36638 -32.11548 -31.97271 -29.51965 -27.24875 -26.19250 -24.00713 -22.72975 -22.21391 -18.97199 -18.76212 -18.35232 -17.42256 -16.97453 -16.59449 -16.54557 -15.73548 -15.46900 -15.33065 -14.61752 -14.44904 -14.17090 -14.01010 -13.63317 -13.16525 -13.09194 -12.83649 -12.76909 -12.48389 -12.16415 -11.97374 -11.95497 -11.27596 -11.11103 -10.98743 -10.46824 -10.05947 -9.62001 -9.13191 -8.08551 -6.19267 0.09251 0.28374 1.44691 1.46036 1.53648 1.93815 1.98800 2.45681 2.59531 3.20369 3.26999 3.45213 3.76409 3.82001 3.95825 4.00305 4.33529 4.38611 4.57465 4.73287 4.87190 4.95751 5.00648 5.07301 5.14071 5.16402 5.25813 5.36823 5.57540 5.70822 5.82239 5.90634 6.25964 6.58546 6.71062 6.85640 6.93563 7.50083 8.96972 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.032471 B = 0.005020 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.100247 B = 5576.049478 C = 5724.773460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 C 0.234 3.766 4 H 0.062 0.938 5 N -0.673 5.673 6 C 0.219 3.781 7 H 0.001 0.999 8 C -0.158 4.158 9 C -0.514 4.514 10 H 0.055 0.945 11 C 0.010 3.990 12 N -0.922 5.922 13 Si 0.959 3.041 14 H -0.270 1.270 15 H -0.285 1.285 16 H -0.276 1.276 17 C -0.099 4.099 18 C -0.072 4.072 19 C -0.153 4.153 20 C 0.085 3.915 21 F -0.145 7.145 22 C -0.149 4.149 23 C -0.082 4.082 24 H 0.247 0.753 25 H 0.342 0.658 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.028 0.972 29 H 0.261 0.739 30 H 0.136 0.864 31 H 0.152 0.848 32 H 0.159 0.841 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.486 -6.609 -14.113 15.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.195 4.195 3 C 0.125 3.875 4 H 0.080 0.920 5 N -0.305 5.305 6 C 0.111 3.889 7 H 0.019 0.981 8 C -0.218 4.218 9 C -0.552 4.552 10 H 0.073 0.927 11 C -0.188 4.188 12 N -0.562 5.562 13 Si 0.785 3.215 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.100 4.100 18 C -0.091 4.091 19 C -0.172 4.172 20 C 0.066 3.934 21 F -0.124 7.124 22 C -0.168 4.168 23 C -0.101 4.101 24 H 0.263 0.737 25 H 0.162 0.838 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.154 0.846 31 H 0.170 0.830 32 H 0.177 0.823 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.073 -6.692 -13.824 15.359 hybrid contribution 0.536 0.369 0.686 0.946 sum 0.463 -6.322 -13.138 14.588 Atomic orbital electron populations 1.25591 0.96659 1.00358 0.99567 1.23257 0.94734 1.00731 1.00787 1.17145 0.85256 0.96263 0.88825 0.92032 1.60647 1.33025 1.30662 1.06134 1.18949 0.92347 0.87320 0.90287 0.98095 1.22261 0.98996 1.01834 0.98665 1.21371 1.48962 0.93629 0.91270 0.92660 1.25682 0.95141 0.95089 1.02883 1.69995 1.51512 1.02814 1.31892 0.85595 0.78688 0.77725 0.79475 1.19552 1.21065 1.20110 1.19841 1.00612 0.94385 0.95136 1.20993 0.96569 0.92241 0.99255 1.21307 1.01746 1.01930 0.92179 1.17900 1.00348 0.88430 0.86740 1.91478 1.86936 1.71743 1.62198 1.21297 1.02725 0.91085 1.01660 1.21101 0.96444 1.01111 0.91429 0.73685 0.83849 0.94591 0.91869 0.95314 0.93022 0.84631 0.82987 0.82296 0.83403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.65 19.25 74.32 1.43 -5.21 16 2 C -0.19 -7.20 12.49 31.12 0.39 -6.81 16 3 C 0.23 8.32 2.49 42.36 0.11 8.43 16 4 H 0.06 2.23 6.97 -2.38 -0.02 2.21 16 5 N -0.67 -27.72 5.38 -486.60 -2.62 -30.34 16 6 C 0.22 10.94 2.37 44.17 0.10 11.04 16 7 H 0.00 0.06 7.62 -2.39 -0.02 0.04 16 8 C -0.16 -7.41 8.92 71.98 0.64 -6.77 16 9 C -0.51 -28.29 8.84 25.60 0.23 -28.07 16 10 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 11 C 0.01 0.57 5.30 84.66 0.45 1.02 16 12 N -0.92 -52.88 11.32 21.45 0.24 -52.63 16 13 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 15 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 C -0.10 -2.85 4.68 -19.86 -0.09 -2.95 16 18 C -0.07 -1.97 8.99 22.26 0.20 -1.77 16 19 C -0.15 -3.59 10.03 22.31 0.22 -3.36 16 20 C 0.09 1.97 7.30 22.38 0.16 2.13 16 21 F -0.14 -3.38 17.27 44.97 0.78 -2.60 16 22 C -0.15 -3.16 10.03 22.32 0.22 -2.93 16 23 C -0.08 -1.96 9.67 22.26 0.22 -1.74 16 24 H 0.25 5.69 7.80 -4.42 -0.03 5.66 16 25 H 0.34 13.07 7.72 -89.69 -0.69 12.38 16 26 H 0.03 1.59 8.13 -2.39 -0.02 1.57 16 27 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 28 H 0.03 1.17 7.43 -2.38 -0.02 1.15 16 29 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.14 3.91 7.71 -2.91 -0.02 3.88 16 31 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 32 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.15 2.96 8.04 -2.91 -0.02 2.94 16 Total: -1.00 -61.79 294.91 5.13 -56.66 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.42 Total: 20.07 kcal Atomic # 6 Polarization: -41.27 SS G_CDS: 4.28 Total: -36.99 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -2.38 Total: -82.97 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -61.79 5.13 -56.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390372811.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.081 kcal (2) G-P(sol) polarization free energy of solvation -61.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds