Wall clock time and date at job start Mon Mar 30 2020 06:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 179.97438 * 10 9 7 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47183 * 180.02562 * 12 11 10 14 14 C 1.38266 * 119.97472 * 269.72746 * 13 12 11 15 15 C 1.38307 * 120.03609 * 179.78508 * 14 13 12 16 16 C 1.37964 * 119.91729 * 0.47093 * 15 14 13 17 17 C 1.38597 * 120.04247 * 359.77901 * 16 15 14 18 18 C 1.37971 * 120.03910 * 359.97438 * 17 16 15 19 19 C 1.51085 * 107.27125 * 179.97438 * 17 16 15 20 20 O 1.43938 * 105.95950 * 17.68856 * 19 17 16 21 21 C 1.43948 * 104.94584 * 331.55548 * 20 19 17 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.00898 * 110.99877 * 56.04956 * 11 10 9 28 28 H 1.08995 * 109.47087 * 299.99901 * 12 11 10 29 29 H 1.09002 * 109.46903 * 59.99922 * 12 11 10 30 30 H 1.07996 * 119.98269 * 359.97438 * 14 13 12 31 31 H 1.07997 * 120.03610 * 180.25107 * 15 14 13 32 32 H 1.07997 * 120.04029 * 180.02562 * 18 17 16 33 33 H 1.09000 * 110.15121 * 136.81745 * 19 17 16 34 34 H 1.09003 * 110.15076 * 258.56403 * 19 17 16 35 35 H 1.09002 * 110.14750 * 147.56841 * 21 20 19 36 36 H 1.08996 * 110.15145 * 269.24807 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 2.4354 -6.0759 0.0018 13 6 1.6474 -7.3605 0.0018 14 6 1.2905 -7.9520 1.1995 15 6 0.5635 -9.1286 1.2010 16 6 0.2032 -9.7163 0.0059 17 6 0.5654 -9.1260 -1.1946 18 6 1.2863 -7.9496 -1.1961 19 6 0.0299 -10.0007 -2.3041 20 8 -0.9750 -10.8355 -1.6998 21 6 -0.5667 -10.9730 -0.3264 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 0.8742 -4.9846 -0.7800 28 1 3.0633 -6.0353 -0.8882 29 1 3.0633 -6.0344 0.8918 30 1 1.5770 -7.4934 2.1343 31 1 0.2813 -9.5885 2.1365 32 1 1.5681 -7.4895 -2.1316 33 1 -0.4139 -9.3851 -3.0865 34 1 0.8299 -10.6151 -2.7172 35 1 -1.4412 -11.0593 0.3185 36 1 0.0726 -11.8482 -0.2105 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390817053.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:43 Heat of formation + Delta-G solvation = -23.210018 kcal Electronic energy + Delta-G solvation = -16733.815279 eV Core-core repulsion = 13989.410287 eV Total energy + Delta-G solvation = -2744.404992 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.78100 -37.96793 -35.75300 -33.16699 -31.77159 -31.57354 -29.35063 -27.95092 -25.92086 -24.18979 -22.95734 -21.85316 -20.83145 -20.38921 -16.81323 -16.54558 -16.33221 -16.26880 -15.35770 -15.12413 -14.49580 -14.38883 -14.10261 -13.76430 -13.34460 -12.97482 -12.76753 -12.51092 -12.25790 -12.11115 -11.89116 -11.25792 -11.06284 -10.97063 -10.90789 -10.56242 -10.25094 -10.01408 -9.43491 -9.19869 -8.94645 -8.55983 -8.35899 -7.86464 -6.00253 -4.03349 1.12350 1.24788 3.32894 3.37344 3.39467 3.53121 3.71504 4.04360 4.43238 4.45568 4.76250 4.83677 5.00000 5.11568 5.12547 5.18028 5.31928 5.35466 5.39277 5.46485 5.56188 5.70301 5.86318 5.98630 6.13980 6.21872 6.30733 6.34488 6.51198 6.58802 6.83856 6.94509 7.41936 7.70351 7.78909 7.91452 8.06665 8.41785 9.03698 9.60438 11.11101 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.047745 B = 0.003366 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.314111 B = 8315.567137 C = 8465.348304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.686 5.686 12 C 0.095 3.905 13 C -0.065 4.065 14 C -0.092 4.092 15 C -0.094 4.094 16 C -0.141 4.141 17 C -0.135 4.135 18 C -0.088 4.088 19 C 0.092 3.908 20 O -0.363 6.363 21 C 0.093 3.907 22 H 0.261 0.739 23 H 0.014 0.986 24 H 0.026 0.974 25 H 0.016 0.984 26 H 0.059 0.941 27 H 0.338 0.662 28 H 0.034 0.966 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 -21.239 -1.047 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.317 5.317 12 C -0.034 4.034 13 C -0.066 4.066 14 C -0.111 4.111 15 C -0.112 4.112 16 C -0.141 4.141 17 C -0.135 4.135 18 C -0.107 4.107 19 C 0.016 3.984 20 O -0.282 6.282 21 C 0.016 3.984 22 H 0.071 0.929 23 H 0.032 0.968 24 H 0.044 0.956 25 H 0.035 0.965 26 H 0.078 0.922 27 H 0.155 0.845 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.149 0.851 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.756 -21.205 -0.470 21.282 hybrid contribution 0.957 1.128 -0.792 1.678 sum 2.713 -20.077 -1.262 20.299 Atomic orbital electron populations 1.69961 1.06044 1.26749 1.50441 1.25006 0.94848 0.99230 0.95261 0.86639 0.79558 0.83080 0.78594 1.20287 1.21250 1.20202 1.21135 0.92945 0.91003 1.51160 0.92784 1.19066 0.94010 0.90355 0.97783 1.22200 0.97048 0.88266 0.98751 1.60655 1.19432 1.01608 1.49996 1.20904 0.93616 0.87764 1.01127 1.19918 0.98038 0.96013 0.92625 1.21069 0.97246 0.94561 0.98215 1.20375 0.98643 0.95717 0.96478 1.20976 1.01148 0.97616 0.94363 1.20939 1.00287 0.96561 0.95734 1.20294 0.98235 0.93964 0.98186 1.21729 0.91162 0.91268 0.94259 1.89072 1.47071 1.70060 1.21982 1.21713 0.98586 0.94325 0.83740 0.92895 0.96804 0.95600 0.96538 0.92214 0.84489 0.94795 0.90297 0.85129 0.85787 0.85897 0.88496 0.90705 0.88651 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.66 5.23 -27.88 -0.15 0.52 16 10 C 0.07 1.36 5.62 -3.82 -0.02 1.34 16 11 N -0.69 -12.24 6.49 -115.05 -0.75 -12.99 16 12 C 0.09 1.35 5.81 -4.97 -0.03 1.33 16 13 C -0.07 -0.86 5.40 -104.59 -0.56 -1.42 16 14 C -0.09 -1.13 9.70 -39.55 -0.38 -1.52 16 15 C -0.09 -1.04 10.04 -39.66 -0.40 -1.44 16 16 C -0.14 -1.60 6.32 -104.40 -0.66 -2.26 16 17 C -0.13 -1.59 6.32 -104.40 -0.66 -2.25 16 18 C -0.09 -1.08 9.70 -39.66 -0.38 -1.47 16 19 C 0.09 0.93 7.63 36.19 0.28 1.21 16 20 O -0.36 -4.21 11.72 -35.23 -0.41 -4.62 16 21 C 0.09 0.89 7.63 36.19 0.28 1.17 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.34 5.95 8.72 -39.29 -0.34 5.61 16 28 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 30 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 306.59 15.07 4.62 4.62 Total: -1.00 -31.33 306.59 -9.30 -40.63 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.37 Total: 0.46 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -3.11 Total: -18.44 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: -0.01 Total: -39.31 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.41 Total: -4.62 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.33 -9.30 -40.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390817053.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.420 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds