Wall clock time and date at job start Mon Mar 30 2020 06:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 179.97438 * 10 9 7 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47183 * 180.02562 * 12 11 10 14 14 C 1.38266 * 119.97472 * 269.72746 * 13 12 11 15 15 C 1.38307 * 120.03609 * 179.78508 * 14 13 12 16 16 C 1.37964 * 119.91729 * 0.47093 * 15 14 13 17 17 C 1.38597 * 120.04247 * 359.77901 * 16 15 14 18 18 C 1.37971 * 120.03910 * 359.97438 * 17 16 15 19 19 C 1.51085 * 107.27125 * 179.97438 * 17 16 15 20 20 O 1.43938 * 105.95950 * 17.68856 * 19 17 16 21 21 C 1.43948 * 104.94584 * 331.55548 * 20 19 17 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.00898 * 110.99877 * 56.04956 * 11 10 9 28 28 H 1.08995 * 109.47087 * 299.99901 * 12 11 10 29 29 H 1.09002 * 109.46903 * 59.99922 * 12 11 10 30 30 H 1.07996 * 119.98269 * 359.97438 * 14 13 12 31 31 H 1.07997 * 120.03610 * 180.25107 * 15 14 13 32 32 H 1.07997 * 120.04029 * 180.02562 * 18 17 16 33 33 H 1.09000 * 110.15121 * 136.81745 * 19 17 16 34 34 H 1.09003 * 110.15076 * 258.56403 * 19 17 16 35 35 H 1.09002 * 110.14750 * 147.56841 * 21 20 19 36 36 H 1.08996 * 110.15145 * 269.24807 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 2.4354 -6.0759 0.0018 13 6 1.6474 -7.3605 0.0018 14 6 1.2905 -7.9520 1.1995 15 6 0.5635 -9.1286 1.2010 16 6 0.2032 -9.7163 0.0059 17 6 0.5654 -9.1260 -1.1946 18 6 1.2863 -7.9496 -1.1961 19 6 0.0299 -10.0007 -2.3041 20 8 -0.9750 -10.8355 -1.6998 21 6 -0.5667 -10.9730 -0.3264 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 0.8742 -4.9846 -0.7800 28 1 3.0633 -6.0353 -0.8882 29 1 3.0633 -6.0344 0.8918 30 1 1.5770 -7.4934 2.1343 31 1 0.2813 -9.5885 2.1365 32 1 1.5681 -7.4895 -2.1316 33 1 -0.4139 -9.3851 -3.0865 34 1 0.8299 -10.6151 -2.7172 35 1 -1.4412 -11.0593 0.3185 36 1 0.0726 -11.8482 -0.2105 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390817053.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:42 Heat of formation + Delta-G solvation = -43.457677 kcal Electronic energy + Delta-G solvation = -16734.693284 eV Core-core repulsion = 13989.410287 eV Total energy + Delta-G solvation = -2745.282997 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.62271 -38.93467 -37.18254 -35.09825 -33.08352 -32.46195 -30.93560 -28.92420 -27.24049 -25.66916 -24.21814 -22.69526 -22.48000 -21.56822 -18.51361 -17.71203 -17.35774 -17.16490 -16.63528 -16.36746 -16.21452 -15.59553 -15.24350 -14.92286 -14.48624 -14.23788 -13.94155 -13.68968 -13.60839 -13.42849 -13.01934 -12.82348 -12.77150 -12.48831 -12.17867 -11.99152 -11.80094 -11.41694 -11.30566 -11.02990 -10.56580 -9.85508 -9.49807 -9.26840 -8.20524 -6.32605 0.20296 0.35657 1.40557 1.43957 1.51931 2.40218 2.60446 2.95593 3.12817 3.19418 3.52610 3.66728 3.85697 3.99027 4.25883 4.40224 4.42472 4.45904 4.50105 4.54082 4.58928 4.64778 4.68726 4.76383 4.93807 5.05350 5.09924 5.30031 5.33061 5.43244 5.62036 5.65540 5.71152 5.76810 5.94970 6.11069 6.24268 6.46865 6.84751 7.36892 8.91475 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.047745 B = 0.003366 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.314111 B = 8315.567137 C = 8465.348304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.031 3.969 10 C 0.084 3.916 11 N -0.693 5.693 12 C 0.100 3.900 13 C -0.082 4.082 14 C -0.104 4.104 15 C -0.096 4.096 16 C -0.147 4.147 17 C -0.148 4.148 18 C -0.096 4.096 19 C 0.091 3.909 20 O -0.382 6.382 21 C 0.091 3.909 22 H 0.264 0.736 23 H -0.010 1.010 24 H -0.007 1.007 25 H 0.022 0.978 26 H 0.062 0.938 27 H 0.337 0.663 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.136 0.864 31 H 0.149 0.851 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.190 -22.016 -1.026 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.081 0.919 9 C -0.007 4.007 10 C -0.045 4.045 11 N -0.324 5.324 12 C -0.028 4.028 13 C -0.082 4.082 14 C -0.122 4.122 15 C -0.114 4.114 16 C -0.147 4.147 17 C -0.148 4.148 18 C -0.115 4.115 19 C 0.015 3.985 20 O -0.301 6.301 21 C 0.015 3.985 22 H 0.073 0.927 23 H 0.008 0.992 24 H 0.012 0.988 25 H 0.041 0.959 26 H 0.081 0.919 27 H 0.155 0.845 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.154 0.846 31 H 0.167 0.833 32 H 0.149 0.851 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.127 0.873 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.784 -22.007 -0.449 22.187 hybrid contribution 0.592 1.275 -0.791 1.613 sum 3.375 -20.731 -1.240 21.041 Atomic orbital electron populations 1.70105 1.07902 1.27910 1.51328 1.26004 0.95769 1.03480 0.94583 0.85457 0.78217 0.77842 0.79255 1.19056 1.20877 1.19060 1.21599 0.93622 0.92182 1.51075 0.91922 1.18924 0.94350 0.92397 0.94992 1.21810 0.95581 0.87983 0.99106 1.60555 1.20102 1.01531 1.50212 1.20894 0.93234 0.86881 1.01809 1.19852 0.99122 0.95827 0.93448 1.21255 0.97568 0.95204 0.98194 1.20645 0.97924 0.95228 0.97605 1.21328 1.00823 0.98244 0.94343 1.21213 1.00158 0.96596 0.96814 1.20420 0.98425 0.94335 0.98307 1.21853 0.91481 0.91304 0.93824 1.89049 1.47843 1.70288 1.22960 1.21897 0.99359 0.94116 0.83102 0.92727 0.99195 0.98828 0.95934 0.91948 0.84545 0.93814 0.89768 0.84597 0.83304 0.85080 0.87839 0.88846 0.87300 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.97 44.30 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.55 -31.35 9.11 25.60 0.23 -31.12 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.03 1.66 5.23 29.85 0.16 1.82 16 10 C 0.08 3.51 5.62 86.30 0.49 3.99 16 11 N -0.69 -24.73 6.49 -517.91 -3.36 -28.09 16 12 C 0.10 2.78 5.81 85.56 0.50 3.28 16 13 C -0.08 -2.09 5.40 -19.85 -0.11 -2.20 16 14 C -0.10 -2.44 9.70 22.29 0.22 -2.22 16 15 C -0.10 -1.97 10.04 22.22 0.22 -1.74 16 16 C -0.15 -3.09 6.32 -19.72 -0.12 -3.21 16 17 C -0.15 -3.29 6.32 -19.72 -0.12 -3.41 16 18 C -0.10 -2.28 9.70 22.22 0.22 -2.07 16 19 C 0.09 1.70 7.63 71.36 0.54 2.24 16 20 O -0.38 -8.20 11.72 -148.98 -1.75 -9.94 16 21 C 0.09 1.55 7.63 71.36 0.54 2.10 16 22 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 23 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 24 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 25 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.34 12.03 8.72 -89.70 -0.78 11.24 16 28 H 0.04 1.13 8.08 -2.39 -0.02 1.11 16 29 H 0.08 2.23 8.08 -2.39 -0.02 2.21 16 30 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 31 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 35 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -67.05 306.59 0.71 -66.34 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.28 Total: 14.69 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 3.22 Total: -32.10 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -3.08 Total: -85.31 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -1.75 Total: -9.94 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -67.05 0.71 -66.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390817053.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.883 kcal (2) G-P(sol) polarization free energy of solvation -67.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds