Wall clock time and date at job start Mon Mar 30 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00237 * 2 1 4 4 H 1.48499 * 109.47125 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47045 * 299.99588 * 3 2 1 6 6 H 1.48498 * 109.47066 * 59.99816 * 3 2 1 7 7 C 1.37878 * 119.99477 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99790 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00375 * 0.02562 * 7 2 1 10 10 H 1.08991 * 110.28516 * 60.67393 * 9 7 2 11 11 C 1.54259 * 110.32157 * 298.54694 * 9 7 2 12 12 C 1.54387 * 105.06271 * 241.10373 * 11 9 7 13 13 N 1.48559 * 104.58955 * 336.15098 * 12 11 9 14 14 C 1.46904 * 111.00066 * 159.04379 * 13 12 11 15 15 C 1.50698 * 109.47407 * 69.86567 * 14 13 12 16 16 C 1.38266 * 119.94769 * 269.73200 * 15 14 13 17 17 C 1.38138 * 120.05343 * 179.72229 * 16 15 14 18 18 C 1.38735 * 119.94855 * 0.57168 * 17 16 15 19 19 O 1.35901 * 120.06005 * 179.67940 * 18 17 16 20 20 C 1.38732 * 119.88296 * 359.70106 * 18 17 16 21 21 C 1.38140 * 119.94679 * 0.02562 * 20 18 17 22 22 C 1.48560 * 104.22567 * 39.48140 * 13 12 11 23 23 H 0.97001 * 119.99820 * 0.02562 * 1 2 3 24 24 H 1.09000 * 110.32330 * 122.20959 * 11 9 7 25 25 H 1.09003 * 110.41347 * 0.04301 * 11 9 7 26 26 H 1.08999 * 110.41133 * 94.92454 * 12 11 9 27 27 H 1.08999 * 110.41276 * 217.37423 * 12 11 9 28 28 H 1.08996 * 109.47493 * 189.87547 * 14 13 12 29 29 H 1.09004 * 109.46624 * 309.87385 * 14 13 12 30 30 H 1.07999 * 119.96702 * 359.97438 * 16 15 14 31 31 H 1.08006 * 120.02834 * 180.25399 * 17 16 15 32 32 H 0.96699 * 114.00089 * 270.02615 * 19 18 17 33 33 H 1.08005 * 120.02594 * 180.02562 * 20 18 17 34 34 H 1.08003 * 119.97464 * 180.02562 * 21 20 18 35 35 H 1.09004 * 110.40940 * 201.73469 * 22 13 12 36 36 H 1.08995 * 110.40669 * 79.29476 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6287 -2.5763 -0.8910 11 6 0.3838 -2.6172 1.2709 12 6 0.9168 -3.8659 2.0059 13 7 1.5545 -4.6829 0.9415 14 6 2.5207 -5.6306 1.5129 15 6 1.7837 -6.6995 2.2778 16 6 1.5165 -6.5257 3.6232 17 6 0.8360 -7.5016 4.3251 18 6 0.4311 -8.6622 3.6819 19 8 -0.2328 -9.6267 4.3718 20 6 0.7054 -8.8367 2.3332 21 6 1.3812 -7.8553 1.6343 22 6 2.2348 -3.6864 0.0747 23 1 -0.4850 0.8401 -0.0004 24 1 -0.6638 -2.7541 1.0029 25 1 0.5016 -1.7315 1.8953 26 1 1.6526 -3.5796 2.7574 27 1 0.0958 -4.4154 2.4663 28 1 3.0972 -6.0901 0.7101 29 1 3.1942 -5.1008 2.1866 30 1 1.8365 -5.6243 4.1246 31 1 0.6239 -7.3636 5.3751 32 1 0.3444 -10.2880 4.7775 33 1 0.3908 -9.7392 1.8301 34 1 1.5946 -7.9905 0.5843 35 1 2.4062 -4.1009 -0.9188 36 1 3.1768 -3.3721 0.5241 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397631361.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:23 Heat of formation + Delta-G solvation = -39.339076 kcal Electronic energy + Delta-G solvation = -17450.731138 eV Core-core repulsion = 14705.626737 eV Total energy + Delta-G solvation = -2745.104401 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.81323 -39.56935 -37.65938 -35.17187 -33.03355 -31.91691 -30.34178 -29.91712 -26.81524 -25.46147 -23.73214 -22.54543 -21.59329 -21.20724 -19.30258 -18.36657 -16.99328 -16.89860 -16.54810 -16.46758 -16.11992 -15.80211 -14.89941 -14.62674 -14.40155 -14.20265 -13.96876 -13.35223 -13.09541 -13.00325 -12.90588 -12.66757 -12.53104 -12.17824 -12.05559 -11.95082 -11.68628 -11.33572 -11.16877 -10.78130 -10.49025 -9.89144 -9.53598 -9.24136 -8.13041 -6.24370 0.28632 0.44988 1.40477 1.42293 1.53578 2.42428 2.66248 3.18034 3.31524 3.40935 3.84310 3.94652 4.11373 4.13758 4.26893 4.44662 4.48374 4.52598 4.62670 4.74139 4.76614 4.86109 4.98951 5.05118 5.12046 5.26098 5.31835 5.38319 5.49138 5.61563 5.67837 5.78672 5.87208 5.93503 5.98212 6.24836 6.40699 6.87247 6.90280 7.43738 8.96187 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.051837 B = 0.004343 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.024351 B = 6444.916027 C = 6592.422539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.037 3.963 10 H -0.003 1.003 11 C -0.084 4.084 12 C 0.049 3.951 13 N -0.514 5.514 14 C 0.082 3.918 15 C -0.090 4.090 16 C -0.104 4.104 17 C -0.153 4.153 18 C 0.095 3.905 19 O -0.510 6.510 20 C -0.152 4.152 21 C -0.090 4.090 22 C 0.053 3.947 23 H 0.260 0.740 24 H 0.025 0.975 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.044 0.956 30 H 0.126 0.874 31 H 0.140 0.860 32 H 0.409 0.591 33 H 0.143 0.857 34 H 0.137 0.863 35 H 0.071 0.929 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.716 -16.937 7.851 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.570 4.570 8 H 0.074 0.926 9 C 0.018 3.982 10 H 0.016 0.984 11 C -0.123 4.123 12 C -0.079 4.079 13 N -0.238 5.238 14 C -0.045 4.045 15 C -0.091 4.091 16 C -0.122 4.122 17 C -0.171 4.171 18 C 0.051 3.949 19 O -0.323 6.323 20 C -0.170 4.170 21 C -0.109 4.109 22 C -0.075 4.075 23 H 0.069 0.931 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.063 0.937 30 H 0.144 0.856 31 H 0.158 0.842 32 H 0.268 0.732 33 H 0.161 0.839 34 H 0.154 0.846 35 H 0.090 0.910 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.705 -16.849 7.379 18.763 hybrid contribution 0.996 1.399 0.479 1.783 sum 4.700 -15.450 7.858 17.959 Atomic orbital electron populations 1.70131 1.07366 1.27214 1.51068 1.25775 0.95623 1.02520 0.94787 0.85539 0.79159 0.79612 0.77549 1.18884 1.20705 1.20696 1.21570 0.92949 0.91622 1.50842 0.92551 1.19357 0.92977 0.92379 0.93449 0.98429 1.21983 0.97455 0.94964 0.97922 1.23012 0.98082 0.93546 0.93274 1.65408 1.27539 1.14453 1.16398 1.21230 0.92835 0.92582 0.97878 1.19844 0.99925 0.95372 0.93915 1.21092 0.98269 0.98911 0.93948 1.21537 0.99684 0.94584 1.01308 1.18583 0.95105 0.90238 0.91011 1.84776 1.36612 1.40173 1.70759 1.21593 1.00094 1.01034 0.94271 1.21090 0.96876 0.92601 1.00298 1.23064 0.95969 0.91731 0.96712 0.93069 0.95618 0.94190 0.94191 0.91064 0.88910 0.93748 0.85567 0.84246 0.73181 0.83885 0.84557 0.91040 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.12 12.35 21.45 0.26 -53.85 16 2 C 0.01 0.66 5.09 84.66 0.43 1.09 16 3 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.53 -29.35 8.37 25.60 0.21 -29.14 16 8 H 0.06 3.03 7.58 -2.91 -0.02 3.00 16 9 C 0.04 1.93 2.99 -10.65 -0.03 1.90 16 10 H 0.00 -0.15 8.14 -2.39 -0.02 -0.16 16 11 C -0.08 -4.14 5.75 31.49 0.18 -3.96 16 12 C 0.05 1.91 5.48 86.45 0.47 2.38 16 13 N -0.51 -19.02 5.36 -886.03 -4.75 -23.77 16 14 C 0.08 2.38 4.96 85.56 0.42 2.81 16 15 C -0.09 -2.39 5.10 -19.85 -0.10 -2.49 16 16 C -0.10 -2.59 8.74 22.25 0.19 -2.39 16 17 C -0.15 -3.46 9.99 22.36 0.22 -3.23 16 18 C 0.10 2.10 6.71 22.51 0.15 2.25 16 19 O -0.51 -9.48 13.50 -92.44 -1.25 -10.73 16 20 C -0.15 -3.31 9.99 22.36 0.22 -3.08 16 21 C -0.09 -2.16 9.69 22.25 0.22 -1.94 16 22 C 0.05 2.19 6.01 86.45 0.52 2.71 16 23 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 24 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.04 2.13 7.24 -2.39 -0.02 2.11 16 26 H 0.04 1.49 7.82 -2.39 -0.02 1.47 16 27 H 0.07 2.65 7.83 -2.39 -0.02 2.63 16 28 H 0.09 2.39 8.07 -2.39 -0.02 2.37 16 29 H 0.04 1.26 7.82 -2.38 -0.02 1.24 16 30 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 31 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 32 H 0.41 3.20 9.06 -74.06 -0.67 2.53 16 33 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 34 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 35 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.04 1.54 7.56 -2.39 -0.02 1.52 16 Total: -1.00 -64.77 298.90 -0.19 -64.97 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.39 Total: 10.87 kcal Atomic # 6 Polarization: -36.22 SS G_CDS: 3.12 Total: -33.10 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -4.48 Total: -77.63 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -1.25 Total: -10.73 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -64.77 -0.19 -64.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397631361.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.628 kcal (2) G-P(sol) polarization free energy of solvation -64.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds