Wall clock time and date at job start Mon Mar 30 2020 06:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99938 * 2 1 4 4 H 1.48504 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47061 * 299.99898 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99848 * 3 2 1 7 7 C 1.37869 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00320 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99802 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.88002 * 303.84584 * 9 7 2 11 11 C 1.55398 * 111.05809 * 67.58770 * 9 7 2 12 12 C 1.54322 * 102.90031 * 153.64741 * 11 9 7 13 13 N 1.47439 * 107.36952 * 337.89642 * 12 11 9 14 14 C 1.46904 * 111.00045 * 236.65966 * 13 12 11 15 15 C 1.50700 * 109.47037 * 290.12992 * 14 13 12 16 16 C 1.38271 * 119.94049 * 269.72589 * 15 14 13 17 17 C 1.38151 * 120.05393 * 179.72708 * 16 15 14 18 18 C 1.38734 * 119.94078 * 0.56425 * 17 16 15 19 19 O 1.35901 * 120.05252 * 179.68436 * 18 17 16 20 20 C 1.38726 * 119.89050 * 359.70947 * 18 17 16 21 21 C 1.38151 * 119.94461 * 359.97438 * 20 18 17 22 22 C 1.47843 * 108.57210 * 358.92676 * 13 12 11 23 23 H 0.97004 * 119.99744 * 0.02562 * 1 2 3 24 24 H 1.09005 * 110.67856 * 35.34619 * 11 9 7 25 25 H 1.08997 * 110.84583 * 272.02943 * 11 9 7 26 26 H 1.09002 * 109.89036 * 218.40745 * 12 11 9 27 27 H 1.09003 * 109.88743 * 97.38054 * 12 11 9 28 28 H 1.09004 * 109.46973 * 50.12514 * 14 13 12 29 29 H 1.08996 * 109.47528 * 170.13051 * 14 13 12 30 30 H 1.07996 * 119.97175 * 359.97438 * 16 15 14 31 31 H 1.07997 * 120.02866 * 180.29437 * 17 16 15 32 32 H 0.96701 * 113.99707 * 270.02303 * 19 18 17 33 33 H 1.08000 * 120.02776 * 180.02562 * 20 18 17 34 34 H 1.07999 * 119.96935 * 180.02562 * 21 20 18 35 35 H 1.08996 * 110.37823 * 142.92442 * 22 13 12 36 36 H 1.09002 * 110.37399 * 265.26957 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.5659 -2.5513 0.8478 11 6 0.4925 -2.7071 -1.3385 12 6 0.3900 -4.2434 -1.4415 13 7 1.4553 -4.8133 -0.5965 14 6 2.3288 -5.6998 -1.3770 15 6 1.5730 -6.9493 -1.7492 16 6 1.6020 -8.0487 -0.9112 17 6 0.9054 -9.1934 -1.2473 18 6 0.1859 -9.2433 -2.4325 19 8 -0.4949 -10.3704 -2.7685 20 6 0.1631 -8.1408 -3.2743 21 6 0.8561 -6.9962 -2.9304 22 6 2.2262 -3.7028 0.0021 23 1 -0.4850 0.8401 -0.0004 24 1 1.0662 -2.3024 -2.1724 25 1 -0.4991 -2.2566 -1.2969 26 1 0.5304 -4.5559 -2.4763 27 1 -0.5847 -4.5748 -1.0833 28 1 2.6510 -5.1866 -2.2831 29 1 3.2014 -5.9670 -0.7809 30 1 2.1663 -8.0112 0.0088 31 1 0.9244 -10.0503 -0.5902 32 1 0.0223 -11.0027 -3.2861 33 1 -0.3965 -8.1770 -4.1972 34 1 0.8383 -6.1375 -3.5852 35 1 2.5212 -3.9518 1.0215 36 1 3.1041 -3.4802 -0.6043 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397631363.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:28 Heat of formation + Delta-G solvation = -19.509596 kcal Electronic energy + Delta-G solvation = -17413.929738 eV Core-core repulsion = 14669.685208 eV Total energy + Delta-G solvation = -2744.244530 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.82472 -38.14957 -36.59767 -33.26410 -31.46151 -30.98372 -28.91878 -28.22187 -25.24004 -23.85705 -22.77091 -21.40589 -19.78395 -19.55436 -18.44056 -16.53521 -15.83518 -15.73542 -15.23523 -14.98270 -14.53269 -14.38017 -13.74268 -13.44162 -12.70985 -12.55967 -12.38983 -12.29883 -11.85942 -11.78110 -11.21578 -11.02900 -10.88924 -10.70141 -10.49541 -10.46469 -10.15927 -9.63152 -9.27292 -8.94372 -8.86452 -8.45610 -8.39768 -7.62616 -6.03710 -4.07096 1.24980 1.39571 3.28109 3.36362 3.39791 3.63065 4.15849 4.41184 4.78817 4.88390 4.97781 5.05926 5.29890 5.41151 5.42811 5.68205 5.73042 5.86091 5.95661 6.04129 6.16418 6.23350 6.32911 6.42464 6.48099 6.53530 6.71961 6.82156 6.84056 7.12617 7.15064 7.57153 7.60218 7.67330 7.73018 7.86020 8.00661 8.40985 8.95907 9.57356 11.06303 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.058662 B = 0.004224 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.199583 B = 6626.566928 C = 6820.409350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.048 3.952 10 H 0.041 0.959 11 C -0.121 4.121 12 C 0.039 3.961 13 N -0.528 5.528 14 C 0.087 3.913 15 C -0.071 4.071 16 C -0.085 4.085 17 C -0.147 4.147 18 C 0.092 3.908 19 O -0.502 6.502 20 C -0.145 4.145 21 C -0.097 4.097 22 C 0.046 3.954 23 H 0.260 0.740 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.385 0.615 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.063 0.937 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.864 -16.348 -5.908 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.029 3.971 10 H 0.059 0.941 11 C -0.160 4.160 12 C -0.089 4.089 13 N -0.252 5.252 14 C -0.041 4.041 15 C -0.071 4.071 16 C -0.104 4.104 17 C -0.165 4.165 18 C 0.048 3.952 19 O -0.311 6.311 20 C -0.164 4.164 21 C -0.116 4.116 22 C -0.081 4.081 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.240 0.760 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.081 0.919 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.037 -16.254 -5.201 17.187 hybrid contribution 1.032 1.153 -0.977 1.830 sum 3.069 -15.100 -6.178 16.601 Atomic orbital electron populations 1.69979 1.05912 1.26433 1.50233 1.24977 0.94831 0.99066 0.94956 0.86567 0.80144 0.83880 0.77583 1.19784 1.21081 1.20976 1.21076 0.92789 0.90308 1.51124 0.92556 1.19789 0.92655 0.90966 0.93650 0.94120 1.22778 1.01919 0.90981 1.00296 1.22940 0.94964 0.96770 0.94181 1.63660 1.11700 1.18913 1.30956 1.21169 0.94757 0.91253 0.96930 1.19947 0.97854 0.95352 0.93986 1.20924 0.98558 0.92021 0.98908 1.21372 0.98210 0.99457 0.97484 1.18453 0.95020 0.87460 0.94282 1.84840 1.41091 1.29586 1.75598 1.21348 1.00982 0.93888 1.00177 1.21024 0.96403 0.97293 0.96850 1.23197 0.96479 0.90766 0.97652 0.93059 0.93427 0.91198 0.94400 0.92018 0.94133 0.90506 0.85519 0.85723 0.75979 0.85745 0.85752 0.91903 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 12.61 55.43 0.70 -24.82 16 2 C 0.06 1.76 5.37 -17.82 -0.10 1.67 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.03 8.50 -34.44 -0.29 -14.32 16 8 H 0.06 1.51 7.77 -52.48 -0.41 1.11 16 9 C 0.05 1.21 2.84 -89.49 -0.25 0.96 16 10 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 11 C -0.12 -2.81 5.91 -24.77 -0.15 -2.96 16 12 C 0.04 0.76 6.25 -2.84 -0.02 0.75 16 13 N -0.53 -10.01 5.15 -232.68 -1.20 -11.20 16 14 C 0.09 1.35 4.75 -4.97 -0.02 1.33 16 15 C -0.07 -1.00 5.11 -104.60 -0.53 -1.54 16 16 C -0.09 -1.11 9.69 -39.60 -0.38 -1.49 16 17 C -0.15 -1.77 9.99 -39.43 -0.39 -2.16 16 18 C 0.09 1.13 6.70 -39.22 -0.26 0.86 16 19 O -0.50 -5.33 13.50 -19.43 -0.26 -5.60 16 20 C -0.15 -1.80 9.99 -39.43 -0.39 -2.19 16 21 C -0.10 -1.30 8.73 -39.61 -0.35 -1.64 16 22 C 0.05 0.96 6.13 -2.29 -0.01 0.95 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 24 H 0.05 1.13 8.04 -51.93 -0.42 0.71 16 25 H 0.07 1.75 7.84 -51.93 -0.41 1.35 16 26 H 0.04 0.67 5.49 -51.93 -0.29 0.38 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.04 0.63 7.90 -51.93 -0.41 0.22 16 29 H 0.08 1.09 8.01 -51.93 -0.42 0.68 16 30 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.39 2.08 9.06 45.56 0.41 2.49 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.58 6.91 -52.49 -0.36 1.22 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.04 0.75 7.68 -51.93 -0.40 0.35 16 LS Contribution 297.71 15.07 4.49 4.49 Total: -1.00 -30.17 297.71 -8.82 -38.99 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.36 Total: 1.82 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -3.16 Total: -19.80 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.50 Total: -36.02 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.26 Total: -5.60 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.17 -8.82 -38.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397631363.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.481 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds