Wall clock time and date at job start Mon Mar 30 2020 06:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99938 * 2 1 4 4 H 1.48504 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47061 * 299.99898 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99848 * 3 2 1 7 7 C 1.37869 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00320 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99802 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.88002 * 303.84584 * 9 7 2 11 11 C 1.55398 * 111.05809 * 67.58770 * 9 7 2 12 12 C 1.54322 * 102.90031 * 153.64741 * 11 9 7 13 13 N 1.47439 * 107.36952 * 337.89642 * 12 11 9 14 14 C 1.46904 * 111.00045 * 236.65966 * 13 12 11 15 15 C 1.50700 * 109.47037 * 290.12992 * 14 13 12 16 16 C 1.38271 * 119.94049 * 269.72589 * 15 14 13 17 17 C 1.38151 * 120.05393 * 179.72708 * 16 15 14 18 18 C 1.38734 * 119.94078 * 0.56425 * 17 16 15 19 19 O 1.35901 * 120.05252 * 179.68436 * 18 17 16 20 20 C 1.38726 * 119.89050 * 359.70947 * 18 17 16 21 21 C 1.38151 * 119.94461 * 359.97438 * 20 18 17 22 22 C 1.47843 * 108.57210 * 358.92676 * 13 12 11 23 23 H 0.97004 * 119.99744 * 0.02562 * 1 2 3 24 24 H 1.09005 * 110.67856 * 35.34619 * 11 9 7 25 25 H 1.08997 * 110.84583 * 272.02943 * 11 9 7 26 26 H 1.09002 * 109.89036 * 218.40745 * 12 11 9 27 27 H 1.09003 * 109.88743 * 97.38054 * 12 11 9 28 28 H 1.09004 * 109.46973 * 50.12514 * 14 13 12 29 29 H 1.08996 * 109.47528 * 170.13051 * 14 13 12 30 30 H 1.07996 * 119.97175 * 359.97438 * 16 15 14 31 31 H 1.07997 * 120.02866 * 180.29437 * 17 16 15 32 32 H 0.96701 * 113.99707 * 270.02303 * 19 18 17 33 33 H 1.08000 * 120.02776 * 180.02562 * 20 18 17 34 34 H 1.07999 * 119.96935 * 180.02562 * 21 20 18 35 35 H 1.08996 * 110.37823 * 142.92442 * 22 13 12 36 36 H 1.09002 * 110.37399 * 265.26957 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.5659 -2.5513 0.8478 11 6 0.4925 -2.7071 -1.3385 12 6 0.3900 -4.2434 -1.4415 13 7 1.4553 -4.8133 -0.5965 14 6 2.3288 -5.6998 -1.3770 15 6 1.5730 -6.9493 -1.7492 16 6 1.6020 -8.0487 -0.9112 17 6 0.9054 -9.1934 -1.2473 18 6 0.1859 -9.2433 -2.4325 19 8 -0.4949 -10.3704 -2.7685 20 6 0.1631 -8.1408 -3.2743 21 6 0.8561 -6.9962 -2.9304 22 6 2.2262 -3.7028 0.0021 23 1 -0.4850 0.8401 -0.0004 24 1 1.0662 -2.3024 -2.1724 25 1 -0.4991 -2.2566 -1.2969 26 1 0.5304 -4.5559 -2.4763 27 1 -0.5847 -4.5748 -1.0833 28 1 2.6510 -5.1866 -2.2831 29 1 3.2014 -5.9670 -0.7809 30 1 2.1663 -8.0112 0.0088 31 1 0.9244 -10.0503 -0.5902 32 1 0.0223 -11.0027 -3.2861 33 1 -0.3965 -8.1770 -4.1972 34 1 0.8383 -6.1375 -3.5852 35 1 2.5212 -3.9518 1.0215 36 1 3.1041 -3.4802 -0.6043 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397631363.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:27 Heat of formation + Delta-G solvation = -39.748545 kcal Electronic energy + Delta-G solvation = -17414.807365 eV Core-core repulsion = 14669.685208 eV Total energy + Delta-G solvation = -2745.122157 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.83779 -39.58460 -37.63727 -35.11709 -33.02353 -31.92955 -30.32664 -29.99285 -26.83374 -25.50354 -23.73867 -22.53430 -21.50466 -21.24797 -19.30124 -18.51432 -17.02114 -16.84255 -16.57342 -16.26252 -16.10448 -16.06265 -14.78323 -14.46857 -14.24491 -14.15132 -13.93377 -13.77482 -13.05431 -12.99463 -12.95965 -12.72633 -12.69343 -12.26690 -12.13271 -11.83807 -11.54128 -11.30260 -11.14469 -10.91056 -10.50715 -9.88487 -9.46797 -9.13066 -8.14693 -6.25283 0.29066 0.45093 1.40368 1.42161 1.53664 2.41898 2.66416 3.16671 3.31088 3.40427 3.86172 3.93911 4.09467 4.12303 4.26136 4.43406 4.47390 4.53200 4.66053 4.72883 4.77817 4.83540 4.99492 5.04229 5.12459 5.23269 5.30264 5.38648 5.49363 5.57705 5.70427 5.78162 5.89758 5.93852 6.05953 6.30261 6.36188 6.85281 6.90457 7.42959 8.95243 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.058662 B = 0.004224 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.199583 B = 6626.566928 C = 6820.409350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.037 3.963 10 H 0.004 0.996 11 C -0.113 4.113 12 C 0.052 3.948 13 N -0.531 5.531 14 C 0.089 3.911 15 C -0.090 4.090 16 C -0.090 4.090 17 C -0.151 4.151 18 C 0.095 3.905 19 O -0.510 6.510 20 C -0.152 4.152 21 C -0.105 4.105 22 C 0.060 3.940 23 H 0.261 0.739 24 H 0.038 0.962 25 H 0.042 0.958 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.409 0.591 33 H 0.140 0.860 34 H 0.127 0.873 35 H 0.068 0.932 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 -17.666 -6.542 19.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.569 4.569 8 H 0.076 0.924 9 C 0.018 3.982 10 H 0.022 0.978 11 C -0.152 4.152 12 C -0.075 4.075 13 N -0.256 5.256 14 C -0.038 4.038 15 C -0.090 4.090 16 C -0.108 4.108 17 C -0.170 4.170 18 C 0.051 3.949 19 O -0.323 6.323 20 C -0.171 4.171 21 C -0.123 4.123 22 C -0.068 4.068 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.154 0.846 31 H 0.161 0.839 32 H 0.268 0.732 33 H 0.158 0.842 34 H 0.145 0.855 35 H 0.086 0.914 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.966 -17.604 -5.848 18.786 hybrid contribution 0.711 1.449 -0.794 1.798 sum 3.677 -16.155 -6.642 17.850 Atomic orbital electron populations 1.70110 1.07408 1.27267 1.51151 1.25792 0.95639 1.02598 0.94629 0.85520 0.79176 0.79494 0.77552 1.18821 1.20694 1.20672 1.21429 0.93042 0.91565 1.50879 0.92444 1.19748 0.93130 0.92284 0.93045 0.97813 1.22574 0.99847 0.93741 0.99012 1.22769 0.95282 0.93753 0.95739 1.63625 1.12017 1.18114 1.31799 1.21212 0.94808 0.91099 0.96726 1.19868 0.99036 0.95167 0.94956 1.21087 0.98690 0.91981 0.99067 1.21594 0.97818 0.99774 0.97767 1.18579 0.94249 0.87936 0.94176 1.84777 1.41767 1.29621 1.76153 1.21538 1.00981 0.93630 1.00933 1.21116 0.96563 0.97882 0.96773 1.22955 0.95586 0.89798 0.98417 0.93039 0.94312 0.93924 0.92041 0.92447 0.93977 0.89095 0.84550 0.83865 0.73184 0.84242 0.85522 0.91369 0.94179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.17 12.61 21.45 0.27 -53.90 16 2 C 0.01 0.69 5.37 84.65 0.45 1.15 16 3 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.53 -29.32 8.50 25.60 0.22 -29.10 16 8 H 0.06 3.08 7.77 -2.91 -0.02 3.06 16 9 C 0.04 1.90 2.84 -10.06 -0.03 1.87 16 10 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 11 C -0.11 -5.37 5.91 31.87 0.19 -5.18 16 12 C 0.05 2.03 6.25 86.65 0.54 2.57 16 13 N -0.53 -19.62 5.15 -890.07 -4.58 -24.21 16 14 C 0.09 2.60 4.75 85.56 0.41 3.01 16 15 C -0.09 -2.38 5.11 -19.85 -0.10 -2.48 16 16 C -0.09 -2.14 9.69 22.26 0.22 -1.92 16 17 C -0.15 -3.27 9.99 22.37 0.22 -3.04 16 18 C 0.10 2.08 6.70 22.51 0.15 2.24 16 19 O -0.51 -9.39 13.50 -92.44 -1.25 -10.64 16 20 C -0.15 -3.43 9.99 22.37 0.22 -3.21 16 21 C -0.10 -2.61 8.73 22.25 0.19 -2.42 16 22 C 0.06 2.48 6.13 86.78 0.53 3.01 16 23 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 24 H 0.04 1.87 8.04 -2.38 -0.02 1.85 16 25 H 0.04 2.22 7.84 -2.39 -0.02 2.20 16 26 H 0.06 2.09 5.49 -2.39 -0.01 2.07 16 27 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.04 1.23 7.90 -2.39 -0.02 1.21 16 29 H 0.09 2.39 8.01 -2.39 -0.02 2.37 16 30 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.41 3.14 9.06 -74.06 -0.67 2.47 16 33 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 34 H 0.13 3.01 6.91 -2.91 -0.02 2.99 16 35 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.04 1.63 7.68 -2.39 -0.02 1.61 16 Total: -1.00 -64.57 297.71 0.09 -64.49 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.40 Total: 12.15 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: 3.22 Total: -33.51 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -4.31 Total: -78.10 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -1.25 Total: -10.64 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -64.57 0.09 -64.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397631363.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.737 kcal (2) G-P(sol) polarization free energy of solvation -64.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds