Wall clock time and date at job start Mon Mar 30 2020 06:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86795 * 119.99898 * 2 1 4 4 H 1.48498 * 109.47261 * 270.00028 * 3 2 1 5 5 H 1.48498 * 109.47212 * 30.00507 * 3 2 1 6 6 H 1.48499 * 109.47103 * 150.00311 * 3 2 1 7 7 C 1.39945 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00297 * 197.85667 * 7 2 1 9 9 C 1.41402 * 120.00076 * 17.84697 * 7 2 1 10 10 C 1.40712 * 120.23894 * 24.39785 * 9 7 2 11 11 C 1.37619 * 119.74219 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.24898 * 0.02562 * 11 10 9 13 13 C 1.50708 * 119.74830 * 179.97438 * 12 11 10 14 14 N 1.46906 * 109.46990 * 89.99866 * 13 12 11 15 15 C 1.46990 * 110.99934 * 302.27101 * 14 13 12 16 16 C 1.53132 * 109.24346 * 181.39225 * 15 14 13 17 17 C 1.53145 * 109.16409 * 301.96859 * 16 15 14 18 18 C 1.53132 * 109.16015 * 57.48251 * 17 16 15 19 19 O 1.43001 * 109.23841 * 302.93056 * 18 17 16 20 20 C 1.38635 * 120.50219 * 0.25133 * 12 11 10 21 21 C 1.37617 * 120.24645 * 359.44592 * 20 12 11 22 22 H 0.96998 * 120.00477 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.13210 * 359.97438 * 10 9 7 24 24 H 1.08010 * 119.87635 * 179.97438 * 11 10 9 25 25 H 1.08999 * 109.46537 * 209.99317 * 13 12 11 26 26 H 1.08998 * 109.46886 * 330.00052 * 13 12 11 27 27 H 1.08995 * 109.50977 * 301.33048 * 15 14 13 28 28 H 1.09006 * 109.51137 * 61.46609 * 15 14 13 29 29 H 1.09001 * 109.52007 * 182.06003 * 16 15 14 30 30 H 1.08996 * 109.57465 * 61.90913 * 16 15 14 31 31 H 1.09004 * 109.52010 * 297.58363 * 17 16 15 32 32 H 1.08996 * 109.52763 * 177.39019 * 17 16 15 33 33 H 1.08998 * 109.50970 * 183.00003 * 18 17 16 34 34 H 1.09004 * 109.54836 * 62.88042 * 18 17 16 35 35 H 1.07993 * 119.87639 * 179.70998 * 20 12 11 36 36 H 1.07996 * 120.12875 * 180.27545 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.4896 2.0464 -1.4000 5 1 1.4396 2.6526 0.7001 6 1 3.5397 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2862 9 6 1.3520 -2.4069 -0.3764 10 6 0.2208 -2.3617 -1.2121 11 6 -0.4099 -3.5310 -1.5711 12 6 0.0648 -4.7499 -1.1121 13 6 -0.6351 -6.0234 -1.5118 14 7 -0.0442 -6.5375 -2.7547 15 6 -0.1329 -5.5410 -3.8316 16 6 0.4616 -6.1298 -5.1142 17 6 1.9136 -6.5404 -4.8529 18 6 1.9521 -7.5421 -3.6953 19 8 1.3429 -6.9541 -2.5429 20 6 1.1750 -4.8059 -0.2837 21 6 1.8253 -3.6499 0.0831 22 1 -0.4851 0.8400 0.0004 23 1 -0.1514 -1.4131 -1.5698 24 1 -1.2786 -3.4987 -2.2121 25 1 -0.5200 -6.7647 -0.7211 26 1 -1.6945 -5.8216 -1.6695 27 1 -1.1775 -5.2800 -4.0009 28 1 0.4248 -4.6483 -3.5484 29 1 0.4315 -5.3817 -5.9064 30 1 -0.1154 -7.0037 -5.4164 31 1 2.5000 -5.6594 -4.5918 32 1 2.3283 -7.0028 -5.7486 33 1 2.9873 -7.7977 -3.4694 34 1 1.4072 -8.4438 -3.9749 35 1 1.5333 -5.7607 0.0717 36 1 2.6926 -3.6961 0.7249 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398975536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:21 Heat of formation + Delta-G solvation = 9.218600 kcal Electronic energy + Delta-G solvation = -17991.177671 eV Core-core repulsion = 15248.178889 eV Total energy + Delta-G solvation = -2742.998782 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.59406 -37.27562 -34.37372 -33.10425 -32.86790 -29.88846 -29.28963 -27.46997 -25.22338 -23.96445 -22.62900 -20.98620 -20.12179 -19.49270 -17.30344 -16.09955 -15.93766 -15.32744 -14.73275 -14.55672 -14.00990 -13.87381 -13.50189 -13.35733 -12.84520 -12.55012 -12.25894 -11.92366 -11.64566 -11.55449 -11.23012 -11.11075 -10.78750 -10.68337 -10.64576 -10.51084 -10.27235 -9.80700 -9.57988 -9.38955 -9.14022 -8.07262 -7.44748 -7.28548 -6.77822 -4.36604 2.71422 3.04973 3.06699 3.09094 3.11016 3.31967 3.91403 4.58372 4.91724 5.02028 5.07245 5.18579 5.62251 5.63920 5.70062 5.81330 5.85615 5.98047 6.01670 6.10100 6.18846 6.25886 6.31647 6.36777 6.47878 6.48290 6.93917 7.06285 7.08593 7.27125 7.37185 7.52922 7.62428 7.86487 8.04881 8.12469 8.30203 8.63136 8.88678 8.97092 10.16456 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.033255 B = 0.005638 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.766175 B = 4965.244204 C = 5068.652279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.169 4.169 11 C -0.092 4.092 12 C -0.248 4.248 13 C 0.103 3.897 14 N -0.343 5.343 15 C 0.011 3.989 16 C -0.116 4.116 17 C -0.155 4.155 18 C 0.063 3.937 19 O -0.247 6.247 20 C -0.063 4.063 21 C -0.230 4.230 22 H 0.280 0.720 23 H 0.117 0.883 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.104 -7.717 -7.472 10.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.111 3.889 10 C -0.188 4.188 11 C -0.111 4.111 12 C -0.251 4.251 13 C -0.024 4.024 14 N -0.110 5.110 15 C -0.117 4.117 16 C -0.154 4.154 17 C -0.193 4.193 18 C -0.016 4.016 19 O -0.251 6.251 20 C -0.082 4.082 21 C -0.249 4.249 22 H 0.091 0.909 23 H 0.134 0.866 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.459 -7.978 -7.406 10.895 hybrid contribution 0.720 1.636 0.066 1.788 sum 0.261 -6.342 -7.341 9.704 Atomic orbital electron populations 1.69826 1.07592 1.29183 1.35212 1.25909 0.94712 1.01300 0.92224 0.86322 0.80543 0.80611 0.79315 1.19292 1.20286 1.18603 1.19617 0.98150 0.91334 1.40139 0.90495 1.17637 0.91025 0.92007 0.88255 1.21272 0.99553 0.96630 1.01351 1.20529 0.98230 0.92803 0.99529 1.19463 1.02343 0.93612 1.09650 1.21138 0.96524 0.94263 0.90471 1.68918 0.97250 1.37639 1.07237 1.22723 1.01638 0.95873 0.91499 1.21569 0.95796 1.00918 0.97098 1.22130 0.97504 1.00604 0.99051 1.22462 0.97210 0.94817 0.87082 1.90940 1.22313 1.80063 1.31816 1.20355 0.94903 0.96276 0.96621 1.20978 1.03792 0.92985 1.07170 0.90892 0.86563 0.89820 0.90562 0.89585 0.89869 0.91490 0.91503 0.91599 0.91296 0.91429 0.89338 0.93228 0.89452 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.60 10.95 55.55 0.61 -19.99 16 2 C 0.08 1.93 5.14 -17.35 -0.09 1.84 16 3 Si 0.91 18.79 29.59 -169.99 -5.03 13.75 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.46 9.05 -37.74 -0.34 -12.81 16 8 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 9 C 0.11 3.07 5.58 -106.82 -0.60 2.48 16 10 C -0.17 -4.39 8.70 -38.87 -0.34 -4.73 16 11 C -0.09 -2.11 7.86 -39.66 -0.31 -2.43 16 12 C -0.25 -5.44 4.37 -104.33 -0.46 -5.90 16 13 C 0.10 1.88 5.86 -4.97 -0.03 1.85 16 14 N -0.34 -5.96 5.43 -114.91 -0.62 -6.58 16 15 C 0.01 0.18 4.97 -3.71 -0.02 0.17 16 16 C -0.12 -1.53 6.11 -26.59 -0.16 -1.69 16 17 C -0.15 -2.02 6.13 -26.59 -0.16 -2.18 16 18 C 0.06 0.88 7.10 37.23 0.26 1.14 16 19 O -0.25 -4.53 10.60 -13.97 -0.15 -4.68 16 20 C -0.06 -1.46 9.35 -39.66 -0.37 -1.83 16 21 C -0.23 -5.83 9.80 -38.87 -0.38 -6.21 16 22 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 23 H 0.12 3.13 6.15 -52.49 -0.32 2.80 16 24 H 0.08 1.73 8.01 -52.48 -0.42 1.31 16 25 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 26 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.07 1.29 6.14 -51.93 -0.32 0.97 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 36 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 293.70 15.07 4.43 4.43 Total: -1.00 -28.18 293.70 -9.02 -37.20 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.26 Total: 6.19 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: -2.99 Total: -30.31 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: -0.02 Total: -26.58 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.15 Total: -4.68 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.18 -9.02 -37.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398975536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.417 kcal (2) G-P(sol) polarization free energy of solvation -28.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds