Wall clock time and date at job start Mon Mar 30 2020 06:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86795 * 119.99898 * 2 1 4 4 H 1.48498 * 109.47261 * 270.00028 * 3 2 1 5 5 H 1.48498 * 109.47212 * 30.00507 * 3 2 1 6 6 H 1.48499 * 109.47103 * 150.00311 * 3 2 1 7 7 C 1.39945 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00297 * 197.85667 * 7 2 1 9 9 C 1.41402 * 120.00076 * 17.84697 * 7 2 1 10 10 C 1.40712 * 120.23894 * 24.39785 * 9 7 2 11 11 C 1.37619 * 119.74219 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.24898 * 0.02562 * 11 10 9 13 13 C 1.50708 * 119.74830 * 179.97438 * 12 11 10 14 14 N 1.46906 * 109.46990 * 89.99866 * 13 12 11 15 15 C 1.46990 * 110.99934 * 302.27101 * 14 13 12 16 16 C 1.53132 * 109.24346 * 181.39225 * 15 14 13 17 17 C 1.53145 * 109.16409 * 301.96859 * 16 15 14 18 18 C 1.53132 * 109.16015 * 57.48251 * 17 16 15 19 19 O 1.43001 * 109.23841 * 302.93056 * 18 17 16 20 20 C 1.38635 * 120.50219 * 0.25133 * 12 11 10 21 21 C 1.37617 * 120.24645 * 359.44592 * 20 12 11 22 22 H 0.96998 * 120.00477 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.13210 * 359.97438 * 10 9 7 24 24 H 1.08010 * 119.87635 * 179.97438 * 11 10 9 25 25 H 1.08999 * 109.46537 * 209.99317 * 13 12 11 26 26 H 1.08998 * 109.46886 * 330.00052 * 13 12 11 27 27 H 1.08995 * 109.50977 * 301.33048 * 15 14 13 28 28 H 1.09006 * 109.51137 * 61.46609 * 15 14 13 29 29 H 1.09001 * 109.52007 * 182.06003 * 16 15 14 30 30 H 1.08996 * 109.57465 * 61.90913 * 16 15 14 31 31 H 1.09004 * 109.52010 * 297.58363 * 17 16 15 32 32 H 1.08996 * 109.52763 * 177.39019 * 17 16 15 33 33 H 1.08998 * 109.50970 * 183.00003 * 18 17 16 34 34 H 1.09004 * 109.54836 * 62.88042 * 18 17 16 35 35 H 1.07993 * 119.87639 * 179.70998 * 20 12 11 36 36 H 1.07996 * 120.12875 * 180.27545 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.4896 2.0464 -1.4000 5 1 1.4396 2.6526 0.7001 6 1 3.5397 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2862 9 6 1.3520 -2.4069 -0.3764 10 6 0.2208 -2.3617 -1.2121 11 6 -0.4099 -3.5310 -1.5711 12 6 0.0648 -4.7499 -1.1121 13 6 -0.6351 -6.0234 -1.5118 14 7 -0.0442 -6.5375 -2.7547 15 6 -0.1329 -5.5410 -3.8316 16 6 0.4616 -6.1298 -5.1142 17 6 1.9136 -6.5404 -4.8529 18 6 1.9521 -7.5421 -3.6953 19 8 1.3429 -6.9541 -2.5429 20 6 1.1750 -4.8059 -0.2837 21 6 1.8253 -3.6499 0.0831 22 1 -0.4851 0.8400 0.0004 23 1 -0.1514 -1.4131 -1.5698 24 1 -1.2786 -3.4987 -2.2121 25 1 -0.5200 -6.7647 -0.7211 26 1 -1.6945 -5.8216 -1.6695 27 1 -1.1775 -5.2800 -4.0009 28 1 0.4248 -4.6483 -3.5484 29 1 0.4315 -5.3817 -5.9064 30 1 -0.1154 -7.0037 -5.4164 31 1 2.5000 -5.6594 -4.5918 32 1 2.3283 -7.0028 -5.7486 33 1 2.9873 -7.7977 -3.4694 34 1 1.4072 -8.4438 -3.9749 35 1 1.5333 -5.7607 0.0717 36 1 2.6926 -3.6961 0.7249 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398975536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:20 Heat of formation + Delta-G solvation = -6.348211 kcal Electronic energy + Delta-G solvation = -17991.852699 eV Core-core repulsion = 15248.178889 eV Total energy + Delta-G solvation = -2743.673810 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.10081 -38.88578 -36.07928 -34.59803 -34.19838 -31.61671 -31.19421 -28.98512 -26.85276 -25.23726 -24.13298 -22.84230 -21.82339 -20.78430 -19.25527 -17.47422 -17.27297 -17.09248 -16.15768 -15.89016 -15.68491 -15.42801 -15.05778 -14.78292 -14.32171 -14.02679 -13.86795 -13.51567 -13.37595 -13.07607 -12.89108 -12.73300 -12.35812 -12.27085 -11.99033 -11.82654 -11.66091 -11.40456 -11.28639 -11.02924 -10.87035 -9.53359 -9.37308 -9.17416 -8.66751 -6.37121 0.90508 1.12433 1.35144 1.47888 1.48541 1.91345 2.18254 2.69272 3.64907 3.77452 3.95195 3.99972 4.08632 4.33454 4.35706 4.50303 4.55192 4.60594 4.65845 4.76351 4.86778 4.90326 4.99707 5.01885 5.04324 5.12866 5.20646 5.33743 5.36048 5.44837 5.67624 5.72423 5.94781 6.07041 6.14758 6.31548 6.37238 6.67069 6.91175 7.00655 8.29992 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.033255 B = 0.005638 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.766175 B = 4965.244204 C = 5068.652279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.503 4.503 8 H 0.071 0.929 9 C 0.081 3.919 10 C -0.192 4.192 11 C -0.088 4.088 12 C -0.232 4.232 13 C 0.104 3.896 14 N -0.335 5.335 15 C 0.009 3.991 16 C -0.113 4.113 17 C -0.153 4.153 18 C 0.054 3.946 19 O -0.280 6.280 20 C -0.069 4.069 21 C -0.250 4.250 22 H 0.289 0.711 23 H 0.101 0.899 24 H 0.109 0.891 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.030 0.970 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.602 -8.621 -8.829 12.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.533 4.533 8 H 0.089 0.911 9 C 0.079 3.921 10 C -0.211 4.211 11 C -0.107 4.107 12 C -0.235 4.235 13 C -0.023 4.023 14 N -0.102 5.102 15 C -0.120 4.120 16 C -0.150 4.150 17 C -0.191 4.191 18 C -0.023 4.023 19 O -0.284 6.284 20 C -0.087 4.087 21 C -0.269 4.269 22 H 0.100 0.900 23 H 0.119 0.881 24 H 0.127 0.873 25 H 0.101 0.899 26 H 0.127 0.873 27 H 0.117 0.883 28 H 0.049 0.951 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.957 -8.907 -8.771 12.537 hybrid contribution 0.840 1.745 0.436 1.985 sum -0.116 -7.162 -8.335 10.990 Atomic orbital electron populations 1.69866 1.08962 1.30602 1.35533 1.26745 0.95519 1.04441 0.91138 0.85202 0.79049 0.75876 0.79571 1.18610 1.18911 1.18405 1.19829 0.98241 0.92740 1.42474 0.91118 1.17975 0.92054 0.92846 0.89268 1.21258 1.00271 0.97173 1.02420 1.20776 0.98507 0.92251 0.99138 1.19894 1.01245 0.95017 1.07316 1.21247 0.97455 0.92204 0.91376 1.68873 0.97300 1.37390 1.06652 1.22830 1.02303 0.94347 0.92506 1.21592 0.95743 1.01895 0.95811 1.22129 0.97386 0.99624 0.99975 1.22739 0.97899 0.95363 0.86313 1.90904 1.22589 1.80630 1.34275 1.20601 0.95213 0.96165 0.96760 1.21142 1.04410 0.93497 1.07897 0.90044 0.88121 0.87285 0.89892 0.87260 0.88301 0.95137 0.90082 0.89786 0.93699 0.88324 0.88004 0.91596 0.87920 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.83 10.95 21.83 0.24 -43.59 16 2 C 0.04 1.89 5.14 85.26 0.44 2.33 16 3 Si 0.98 39.02 29.59 68.60 2.03 41.05 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.50 -28.27 9.05 23.46 0.21 -28.06 16 8 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 9 C 0.08 4.57 5.58 -21.29 -0.12 4.45 16 10 C -0.19 -10.29 8.70 22.73 0.20 -10.10 16 11 C -0.09 -4.03 7.86 22.22 0.17 -3.86 16 12 C -0.23 -10.01 4.37 -19.67 -0.09 -10.09 16 13 C 0.10 3.57 5.86 85.56 0.50 4.07 16 14 N -0.33 -10.86 5.43 -517.45 -2.81 -13.67 16 15 C 0.01 0.27 4.97 86.33 0.43 0.70 16 16 C -0.11 -2.64 6.11 30.69 0.19 -2.46 16 17 C -0.15 -3.64 6.13 30.69 0.19 -3.45 16 18 C 0.05 1.40 7.10 72.03 0.51 1.91 16 19 O -0.28 -9.77 10.60 -50.36 -0.53 -10.31 16 20 C -0.07 -3.22 9.35 22.22 0.21 -3.01 16 21 C -0.25 -13.12 9.80 22.73 0.22 -12.90 16 22 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 23 H 0.10 5.63 6.15 -2.91 -0.02 5.62 16 24 H 0.11 4.36 8.01 -2.91 -0.02 4.34 16 25 H 0.08 2.75 8.08 -2.39 -0.02 2.73 16 26 H 0.11 3.24 8.08 -2.39 -0.02 3.22 16 27 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.03 1.15 6.14 -2.38 -0.01 1.13 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.09 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -62.45 293.70 3.04 -59.41 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 1.05 Total: 27.58 kcal Atomic # 6 Polarization: -63.54 SS G_CDS: 3.07 Total: -60.47 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -2.57 Total: -57.26 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -0.53 Total: -10.31 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -62.45 3.04 -59.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398975536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.058 kcal (2) G-P(sol) polarization free energy of solvation -62.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds