Wall clock time and date at job start Mon Mar 30 2020 06:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86802 * 119.99966 * 2 1 4 4 H 1.48498 * 109.47459 * 83.39566 * 3 2 1 5 5 H 1.48504 * 109.46987 * 203.40033 * 3 2 1 6 6 H 1.48505 * 109.47140 * 323.39362 * 3 2 1 7 7 C 1.39896 * 120.00149 * 179.72192 * 2 1 3 8 8 H 1.07990 * 119.99909 * 37.62440 * 7 2 1 9 9 C 1.41210 * 119.99946 * 217.62562 * 7 2 1 10 10 C 1.40837 * 120.17860 * 357.19262 * 9 7 2 11 11 C 1.36445 * 119.80760 * 179.71422 * 10 9 7 12 12 C 1.39307 * 120.18448 * 0.58001 * 11 10 9 13 13 O 1.35674 * 119.81580 * 179.69122 * 12 11 10 14 14 C 1.42903 * 116.99850 * 185.93460 * 13 12 11 15 15 H 1.08996 * 110.43740 * 33.42460 * 14 13 12 16 16 C 1.54887 * 110.48809 * 270.73639 * 14 13 12 17 17 C 1.54893 * 102.74949 * 203.37989 * 16 14 13 18 18 C 1.54263 * 104.19290 * 37.94374 * 17 16 14 19 19 C 1.53875 * 106.60193 * 336.39065 * 18 17 16 20 20 H 1.08995 * 110.07314 * 119.30964 * 19 18 17 21 21 N 1.46909 * 110.02848 * 240.71915 * 19 18 17 22 22 C 1.39316 * 120.36587 * 359.67444 * 12 11 10 23 23 C 1.36432 * 120.18691 * 0.04054 * 22 12 11 24 24 H 0.97004 * 120.00070 * 174.98797 * 1 2 3 25 25 H 1.07994 * 120.09591 * 0.02562 * 10 9 7 26 26 H 1.08000 * 119.90559 * 180.29458 * 11 10 9 27 27 H 1.09000 * 110.75393 * 321.69834 * 16 14 13 28 28 H 1.08996 * 110.75663 * 85.06442 * 16 14 13 29 29 H 1.08999 * 110.48701 * 279.26480 * 17 16 14 30 30 H 1.08998 * 110.59699 * 156.67273 * 17 16 14 31 31 H 1.08999 * 110.03171 * 217.10105 * 18 17 16 32 32 H 1.09002 * 110.07663 * 95.69546 * 18 17 16 33 33 H 1.00898 * 110.99584 * 297.16144 * 21 19 18 34 34 H 1.00899 * 111.00306 * 61.11989 * 21 19 18 35 35 H 1.08001 * 119.90342 * 180.02562 * 22 12 11 36 36 H 1.07997 * 120.09446 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3508 2.1270 1.3907 5 1 3.6030 1.4040 -0.5561 6 1 1.5169 2.6084 -0.8349 7 6 2.0082 -1.2115 0.0059 8 1 1.6367 -2.0522 -0.5610 9 6 3.2001 -1.3350 0.7531 10 6 3.7196 -0.2244 1.4460 11 6 4.8686 -0.3537 2.1704 12 6 5.5340 -1.5768 2.2160 13 8 6.6793 -1.6953 2.9335 14 6 7.3814 -2.9360 2.8344 15 1 7.2680 -3.3588 1.8362 16 6 6.8773 -3.9316 3.9085 17 6 8.0759 -4.8999 4.0665 18 6 9.3156 -3.9886 3.9546 19 6 8.8741 -2.7400 3.1712 20 1 9.0046 -1.8482 3.7842 21 7 9.6574 -2.6190 1.9343 22 6 5.0296 -2.6789 1.5291 23 6 3.8787 -2.5680 0.8048 24 1 -0.4850 -0.8369 -0.0734 25 1 3.2073 0.7256 1.4081 26 1 5.2658 0.4957 2.7062 27 1 6.6708 -3.4161 4.8464 28 1 5.9939 -4.4645 3.5569 29 1 8.0746 -5.6420 3.2682 30 1 8.0483 -5.3885 5.0405 31 1 10.1110 -4.5048 3.4171 32 1 9.6610 -3.7031 4.9482 33 1 10.6371 -2.4901 2.1380 34 1 9.5145 -3.4189 1.3361 35 1 5.5513 -3.6237 1.5699 36 1 3.4893 -3.4232 0.2725 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403363181.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:54 Heat of formation + Delta-G solvation = -25.339514 kcal Electronic energy + Delta-G solvation = -17687.573880 eV Core-core repulsion = 14943.076546 eV Total energy + Delta-G solvation = -2744.497334 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.53301 -37.74816 -35.90132 -33.50764 -32.59093 -29.99577 -29.61076 -27.82551 -26.29541 -24.21408 -22.09206 -20.80179 -20.35979 -19.88068 -18.15191 -17.64248 -16.01265 -15.48682 -15.09947 -14.51278 -14.40179 -14.28977 -13.75290 -13.37170 -12.97994 -12.85227 -12.34807 -12.25876 -12.13274 -11.58353 -11.50143 -11.19999 -10.94266 -10.84041 -10.67513 -10.56035 -10.15609 -9.91572 -9.81596 -9.04875 -8.77376 -8.69812 -7.80795 -7.48483 -7.26075 -4.35548 2.74324 2.79643 3.18453 3.37262 3.53637 3.96492 4.01159 4.35498 4.44436 4.52414 4.83938 4.94843 5.34237 5.40508 5.46509 5.47668 5.51795 5.59758 5.76364 5.86893 5.92944 6.05182 6.10139 6.19090 6.26537 6.44127 6.74112 6.93497 7.10035 7.24159 7.37238 7.38888 7.44342 7.67830 7.82748 7.93612 8.28211 8.49922 8.67555 8.85569 9.84129 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.043892 B = 0.005242 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.778278 B = 5339.698663 C = 5649.834227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.049 3.951 3 Si 1.078 2.922 4 H -0.275 1.275 5 H -0.263 1.263 6 H -0.294 1.294 7 C -0.518 4.518 8 H 0.076 0.924 9 C 0.083 3.917 10 C -0.237 4.237 11 C -0.081 4.081 12 C -0.030 4.030 13 O -0.314 6.314 14 C 0.097 3.903 15 H 0.075 0.925 16 C -0.148 4.148 17 C -0.122 4.122 18 C -0.155 4.155 19 C 0.089 3.911 20 H 0.093 0.907 21 N -0.839 5.839 22 C -0.141 4.141 23 C -0.207 4.207 24 H 0.290 0.710 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.340 0.660 34 H 0.339 0.661 35 H 0.097 0.903 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.836 -6.099 5.358 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.174 4.174 3 Si 0.907 3.093 4 H -0.203 1.203 5 H -0.188 1.188 6 H -0.222 1.222 7 C -0.545 4.545 8 H 0.094 0.906 9 C 0.080 3.920 10 C -0.255 4.255 11 C -0.100 4.100 12 C -0.073 4.073 13 O -0.230 6.230 14 C 0.039 3.961 15 H 0.092 0.908 16 C -0.186 4.186 17 C -0.159 4.159 18 C -0.195 4.195 19 C -0.023 4.023 20 H 0.111 0.889 21 N -0.368 5.368 22 C -0.159 4.159 23 C -0.226 4.226 24 H 0.101 0.899 25 H 0.115 0.885 26 H 0.118 0.882 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.115 0.885 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.161 -3.719 5.353 14.687 hybrid contribution 0.451 -2.984 0.204 3.025 sum 13.612 -6.703 5.557 16.158 Atomic orbital electron populations 1.70629 1.08512 1.33654 1.27926 1.27369 0.95314 1.05126 0.89637 0.83559 0.76000 0.72699 0.77072 1.20306 1.18752 1.22229 1.20505 1.06962 0.99616 1.27418 0.90635 1.17581 0.91498 0.91167 0.91715 1.20438 0.99636 0.98113 1.07329 1.19590 0.95789 0.94234 1.00396 1.18328 0.90131 0.95079 1.03712 1.85851 1.35860 1.34926 1.66330 1.22890 0.89938 0.84792 0.98459 0.90754 1.23032 0.97968 0.97206 1.00443 1.22238 0.94500 0.97449 1.01757 1.22978 0.98061 0.97104 1.01371 1.22075 0.92284 0.97467 0.90425 0.88869 1.58763 1.12816 1.48329 1.16843 1.20479 0.98186 0.96240 1.01030 1.20340 0.98081 0.97507 1.06680 0.89868 0.88497 0.88181 0.90405 0.90875 0.91683 0.91483 0.91859 0.91309 0.84748 0.84842 0.88529 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.93 13.66 55.54 0.76 -20.17 16 2 C 0.05 1.31 5.35 -17.34 -0.09 1.21 16 3 Si 1.08 24.62 24.97 -169.99 -4.24 20.37 16 4 H -0.27 -6.06 6.65 56.52 0.38 -5.68 16 5 H -0.26 -5.96 6.95 56.52 0.39 -5.57 16 6 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.20 9.31 -37.83 -0.35 -14.55 16 8 H 0.08 2.10 8.06 -52.49 -0.42 1.68 16 9 C 0.08 2.23 5.63 -106.80 -0.60 1.63 16 10 C -0.24 -6.07 7.96 -39.25 -0.31 -6.38 16 11 C -0.08 -1.95 9.92 -39.83 -0.40 -2.35 16 12 C -0.03 -0.68 6.69 -38.78 -0.26 -0.94 16 13 O -0.31 -6.41 9.83 -18.72 -0.18 -6.59 16 14 C 0.10 1.55 2.36 -25.07 -0.06 1.49 16 15 H 0.07 1.23 6.05 -51.93 -0.31 0.92 16 16 C -0.15 -2.04 6.37 -24.74 -0.16 -2.20 16 17 C -0.12 -1.27 6.83 -25.07 -0.17 -1.44 16 18 C -0.16 -1.53 6.57 -25.61 -0.17 -1.70 16 19 C 0.09 1.14 3.80 -66.59 -0.25 0.89 16 20 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 21 N -0.84 -9.86 9.14 -3.71 -0.03 -9.90 16 22 C -0.14 -3.16 8.75 -39.83 -0.35 -3.51 16 23 C -0.21 -5.09 9.74 -39.25 -0.38 -5.48 16 24 H 0.29 7.45 8.73 -40.82 -0.36 7.10 16 25 H 0.10 2.42 2.29 -52.49 -0.12 2.30 16 26 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.07 1.05 7.55 -51.93 -0.39 0.66 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.34 3.12 9.07 -39.29 -0.36 2.77 16 34 H 0.34 3.58 8.86 -39.29 -0.35 3.23 16 35 H 0.10 1.89 5.43 -52.49 -0.28 1.60 16 36 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 288.28 15.07 4.34 4.34 Total: -1.00 -28.74 288.28 -7.70 -36.44 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -4.79 Total: 8.83 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: -3.55 Total: -33.33 kcal Atomic # 7 Polarization: -30.79 SS G_CDS: 0.72 Total: -30.07 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.18 Total: -6.59 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -4.24 Total: 20.37 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.74 -7.70 -36.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403363181.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.103 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds