Wall clock time and date at job start Mon Mar 30 2020 06:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86802 * 119.99966 * 2 1 4 4 H 1.48498 * 109.47459 * 83.39566 * 3 2 1 5 5 H 1.48504 * 109.46987 * 203.40033 * 3 2 1 6 6 H 1.48505 * 109.47140 * 323.39362 * 3 2 1 7 7 C 1.39896 * 120.00149 * 179.72192 * 2 1 3 8 8 H 1.07990 * 119.99909 * 37.62440 * 7 2 1 9 9 C 1.41210 * 119.99946 * 217.62562 * 7 2 1 10 10 C 1.40837 * 120.17860 * 357.19262 * 9 7 2 11 11 C 1.36445 * 119.80760 * 179.71422 * 10 9 7 12 12 C 1.39307 * 120.18448 * 0.58001 * 11 10 9 13 13 O 1.35674 * 119.81580 * 179.69122 * 12 11 10 14 14 C 1.42903 * 116.99850 * 185.93460 * 13 12 11 15 15 H 1.08996 * 110.43740 * 33.42460 * 14 13 12 16 16 C 1.54887 * 110.48809 * 270.73639 * 14 13 12 17 17 C 1.54893 * 102.74949 * 203.37989 * 16 14 13 18 18 C 1.54263 * 104.19290 * 37.94374 * 17 16 14 19 19 C 1.53875 * 106.60193 * 336.39065 * 18 17 16 20 20 H 1.08995 * 110.07314 * 119.30964 * 19 18 17 21 21 N 1.46909 * 110.02848 * 240.71915 * 19 18 17 22 22 C 1.39316 * 120.36587 * 359.67444 * 12 11 10 23 23 C 1.36432 * 120.18691 * 0.04054 * 22 12 11 24 24 H 0.97004 * 120.00070 * 174.98797 * 1 2 3 25 25 H 1.07994 * 120.09591 * 0.02562 * 10 9 7 26 26 H 1.08000 * 119.90559 * 180.29458 * 11 10 9 27 27 H 1.09000 * 110.75393 * 321.69834 * 16 14 13 28 28 H 1.08996 * 110.75663 * 85.06442 * 16 14 13 29 29 H 1.08999 * 110.48701 * 279.26480 * 17 16 14 30 30 H 1.08998 * 110.59699 * 156.67273 * 17 16 14 31 31 H 1.08999 * 110.03171 * 217.10105 * 18 17 16 32 32 H 1.09002 * 110.07663 * 95.69546 * 18 17 16 33 33 H 1.00898 * 110.99584 * 297.16144 * 21 19 18 34 34 H 1.00899 * 111.00306 * 61.11989 * 21 19 18 35 35 H 1.08001 * 119.90342 * 180.02562 * 22 12 11 36 36 H 1.07997 * 120.09446 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3508 2.1270 1.3907 5 1 3.6030 1.4040 -0.5561 6 1 1.5169 2.6084 -0.8349 7 6 2.0082 -1.2115 0.0059 8 1 1.6367 -2.0522 -0.5610 9 6 3.2001 -1.3350 0.7531 10 6 3.7196 -0.2244 1.4460 11 6 4.8686 -0.3537 2.1704 12 6 5.5340 -1.5768 2.2160 13 8 6.6793 -1.6953 2.9335 14 6 7.3814 -2.9360 2.8344 15 1 7.2680 -3.3588 1.8362 16 6 6.8773 -3.9316 3.9085 17 6 8.0759 -4.8999 4.0665 18 6 9.3156 -3.9886 3.9546 19 6 8.8741 -2.7400 3.1712 20 1 9.0046 -1.8482 3.7842 21 7 9.6574 -2.6190 1.9343 22 6 5.0296 -2.6789 1.5291 23 6 3.8787 -2.5680 0.8048 24 1 -0.4850 -0.8369 -0.0734 25 1 3.2073 0.7256 1.4081 26 1 5.2658 0.4957 2.7062 27 1 6.6708 -3.4161 4.8464 28 1 5.9939 -4.4645 3.5569 29 1 8.0746 -5.6420 3.2682 30 1 8.0483 -5.3885 5.0405 31 1 10.1110 -4.5048 3.4171 32 1 9.6610 -3.7031 4.9482 33 1 10.6371 -2.4901 2.1380 34 1 9.5145 -3.4189 1.3361 35 1 5.5513 -3.6237 1.5699 36 1 3.4893 -3.4232 0.2725 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403363181.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:53 Heat of formation + Delta-G solvation = -44.121052 kcal Electronic energy + Delta-G solvation = -17688.388309 eV Core-core repulsion = 14943.076546 eV Total energy + Delta-G solvation = -2745.311763 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.99528 -39.28050 -37.46505 -35.44469 -33.53756 -31.85516 -31.49965 -28.96757 -27.37826 -26.05882 -23.84726 -22.36250 -21.78269 -21.03296 -20.02168 -19.26080 -17.32256 -16.75729 -16.27678 -16.22971 -16.03241 -15.85649 -15.24234 -14.64924 -14.56117 -14.36041 -14.10359 -13.57036 -13.38362 -13.22379 -12.94279 -12.82897 -12.51589 -12.22144 -12.03394 -11.86382 -11.58728 -11.43957 -11.38634 -10.95265 -10.68016 -9.71534 -9.59085 -9.51885 -9.15640 -6.39042 0.81237 0.87655 1.33734 1.54759 1.75291 2.11475 2.46068 2.60154 3.43334 3.49732 3.55107 3.90886 3.98630 4.12771 4.20813 4.28829 4.39609 4.48893 4.51632 4.57392 4.65610 4.80018 4.91295 5.01979 5.06896 5.11216 5.14574 5.31164 5.36320 5.40605 5.46102 5.74408 5.86823 6.00665 6.23562 6.32264 6.51926 6.61789 6.72315 7.02574 7.81168 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.043892 B = 0.005242 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.778278 B = 5339.698663 C = 5649.834227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.021 3.979 3 Si 1.107 2.893 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.276 1.276 7 C -0.553 4.553 8 H 0.053 0.947 9 C 0.058 3.942 10 C -0.248 4.248 11 C -0.098 4.098 12 C -0.012 4.012 13 O -0.324 6.324 14 C 0.082 3.918 15 H 0.068 0.932 16 C -0.149 4.149 17 C -0.114 4.114 18 C -0.144 4.144 19 C 0.094 3.906 20 H 0.081 0.919 21 N -0.852 5.852 22 C -0.139 4.139 23 C -0.218 4.218 24 H 0.284 0.716 25 H 0.103 0.897 26 H 0.122 0.878 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.355 0.645 34 H 0.346 0.654 35 H 0.127 0.873 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.598 -6.577 6.575 19.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.198 4.198 3 Si 0.930 3.070 4 H -0.188 1.188 5 H -0.189 1.189 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.071 0.929 9 C 0.055 3.945 10 C -0.266 4.266 11 C -0.117 4.117 12 C -0.055 4.055 13 O -0.240 6.240 14 C 0.025 3.975 15 H 0.086 0.914 16 C -0.187 4.187 17 C -0.152 4.152 18 C -0.184 4.184 19 C -0.018 4.018 20 H 0.099 0.901 21 N -0.384 5.384 22 C -0.157 4.157 23 C -0.237 4.237 24 H 0.095 0.905 25 H 0.120 0.880 26 H 0.140 0.860 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.170 0.830 34 H 0.160 0.840 35 H 0.145 0.855 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.935 -4.221 6.576 17.748 hybrid contribution -0.213 -2.970 -0.093 2.979 sum 15.722 -7.190 6.483 18.464 Atomic orbital electron populations 1.70684 1.08830 1.33345 1.29748 1.28330 0.95457 1.07215 0.88816 0.83198 0.75185 0.70502 0.78130 1.18777 1.18857 1.20318 1.20492 1.08391 0.99787 1.29348 0.92909 1.17828 0.91834 0.92483 0.92328 1.20627 1.00316 0.98157 1.07542 1.19891 0.95586 0.95640 1.00572 1.18525 0.90369 0.94668 1.01977 1.85857 1.34843 1.37692 1.65611 1.23342 0.91724 0.83480 0.98972 0.91386 1.23009 0.99188 0.97335 0.99179 1.22232 0.92798 0.96934 1.03203 1.22906 0.98261 0.95456 1.01785 1.21979 0.90219 0.98564 0.91012 0.90085 1.58697 1.13933 1.49040 1.16703 1.20730 0.97434 0.97603 0.99969 1.20551 0.98791 0.97194 1.07155 0.90459 0.87991 0.86047 0.91074 0.91830 0.90666 0.89756 0.89720 0.90115 0.83008 0.84021 0.85540 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.93 13.66 21.82 0.30 -43.63 16 2 C 0.02 1.15 5.35 85.24 0.46 1.60 16 3 Si 1.11 49.46 24.97 68.60 1.71 51.17 16 4 H -0.26 -10.98 6.65 99.48 0.66 -10.32 16 5 H -0.26 -11.72 6.95 99.48 0.69 -11.03 16 6 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.55 -31.42 9.31 23.40 0.22 -31.21 16 8 H 0.05 3.11 8.06 -2.92 -0.02 3.09 16 9 C 0.06 3.14 5.63 -21.28 -0.12 3.02 16 10 C -0.25 -12.65 7.96 22.49 0.18 -12.47 16 11 C -0.10 -4.59 9.92 22.11 0.22 -4.37 16 12 C -0.01 -0.52 6.69 22.79 0.15 -0.37 16 13 O -0.32 -12.61 9.83 -89.92 -0.88 -13.50 16 14 C 0.08 2.41 2.36 31.67 0.07 2.48 16 15 H 0.07 2.09 6.05 -2.39 -0.01 2.08 16 16 C -0.15 -3.73 6.37 31.89 0.20 -3.53 16 17 C -0.11 -1.94 6.83 31.67 0.22 -1.73 16 18 C -0.14 -2.26 6.57 31.32 0.21 -2.05 16 19 C 0.09 2.14 3.80 45.64 0.17 2.31 16 20 H 0.08 2.05 8.07 -2.39 -0.02 2.03 16 21 N -0.85 -17.60 9.14 -165.66 -1.51 -19.11 16 22 C -0.14 -6.07 8.75 22.11 0.19 -5.87 16 23 C -0.22 -10.75 9.74 22.48 0.22 -10.53 16 24 H 0.28 15.26 8.73 -92.71 -0.81 14.45 16 25 H 0.10 5.02 2.29 -2.91 -0.01 5.02 16 26 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 27 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 1.70 7.55 -2.39 -0.02 1.68 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.01 7.92 -2.39 -0.02 1.00 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.35 5.43 9.07 -89.70 -0.81 4.61 16 34 H 0.35 6.28 8.86 -89.69 -0.79 5.49 16 35 H 0.13 4.69 5.43 -2.91 -0.02 4.67 16 36 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -62.18 288.28 1.40 -60.78 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: -0.60 Total: 27.01 kcal Atomic # 6 Polarization: -65.10 SS G_CDS: 2.39 Total: -62.71 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -1.22 Total: -62.74 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.88 Total: -13.50 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 1.71 Total: 51.17 kcal Total: -62.18 1.40 -60.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403363181.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.655 kcal (2) G-P(sol) polarization free energy of solvation -62.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds