Wall clock time and date at job start Mon Mar 30 2020 06:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86798 * 119.99799 * 2 1 4 4 H 1.48496 * 109.46925 * 239.99575 * 3 2 1 5 5 H 1.48503 * 109.46962 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46752 * 119.99644 * 3 2 1 7 7 C 1.39892 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99330 * 193.03071 * 7 2 1 9 9 C 1.41208 * 120.00705 * 13.03756 * 7 2 1 10 10 C 1.40839 * 120.17627 * 26.58963 * 9 7 2 11 11 C 1.36437 * 119.81281 * 180.02562 * 10 9 7 12 12 C 1.39317 * 120.18065 * 359.97438 * 11 10 9 13 13 O 1.35683 * 119.81280 * 179.97438 * 12 11 10 14 14 C 1.42894 * 116.99587 * 184.91022 * 13 12 11 15 15 H 1.09005 * 110.43958 * 38.84353 * 14 13 12 16 16 C 1.54891 * 110.48875 * 276.30298 * 14 13 12 17 17 C 1.54886 * 102.74903 * 203.25141 * 16 14 13 18 18 C 1.54262 * 104.19925 * 37.94120 * 17 16 14 19 19 C 1.53873 * 106.59759 * 336.38828 * 18 17 16 20 20 H 1.09000 * 110.03807 * 240.71246 * 19 18 17 21 21 N 1.46905 * 110.03008 * 119.28231 * 19 18 17 22 22 C 1.39305 * 120.36958 * 0.26256 * 12 11 10 23 23 C 1.36441 * 120.18261 * 359.47781 * 22 12 11 24 24 H 0.97001 * 120.00299 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.09503 * 0.02562 * 10 9 7 26 26 H 1.08000 * 119.91117 * 179.97438 * 11 10 9 27 27 H 1.09007 * 110.75674 * 321.56171 * 16 14 13 28 28 H 1.08997 * 110.75671 * 84.93396 * 16 14 13 29 29 H 1.09002 * 110.49166 * 156.62137 * 17 16 14 30 30 H 1.09007 * 110.48596 * 279.12944 * 17 16 14 31 31 H 1.08995 * 110.03659 * 95.67776 * 18 17 16 32 32 H 1.09008 * 110.03196 * 217.05725 * 18 17 16 33 33 H 1.00909 * 110.99604 * 62.83988 * 21 19 18 34 34 H 1.00900 * 110.99844 * 186.79040 * 21 19 18 35 35 H 1.07998 * 119.91118 * 179.72341 * 22 12 11 36 36 H 1.07999 * 120.09770 * 180.25838 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0966 1.6964 -1.2124 5 1 1.2777 2.7464 -0.0006 6 1 3.0965 1.6964 1.2126 7 6 2.0083 -1.2115 0.0005 8 1 3.0674 -1.2234 0.2115 9 6 1.3296 -2.4188 -0.2748 10 6 0.1651 -2.4116 -1.0668 11 6 -0.4851 -3.5824 -1.3277 12 6 0.0003 -4.7828 -0.8135 13 8 -0.6524 -5.9427 -1.0772 14 6 -0.1660 -7.1217 -0.4329 15 1 0.1386 -6.8985 0.5897 16 6 1.0156 -7.7272 -1.2305 17 6 1.0024 -9.2112 -0.7873 18 6 -0.4963 -9.5584 -0.6723 19 6 -1.2392 -8.2299 -0.4468 20 1 -1.7645 -8.2530 0.5079 21 7 -2.1916 -7.9942 -1.5402 22 6 1.1487 -4.7980 -0.0251 23 6 1.8137 -3.6367 0.2408 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2123 -1.4820 -1.4665 26 1 -1.3785 -3.5787 -1.9346 27 1 0.8411 -7.6429 -2.3032 28 1 1.9548 -7.2492 -0.9521 29 1 1.4826 -9.8381 -1.5387 30 1 1.4977 -9.3258 0.1769 31 1 -0.8425 -10.0283 -1.5928 32 1 -0.6608 -10.2271 0.1727 33 1 -2.9009 -8.7115 -1.5628 34 1 -2.6066 -7.0774 -1.4668 35 1 1.5160 -5.7322 0.3734 36 1 2.7062 -3.6507 0.8488 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403363185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:00 Heat of formation + Delta-G solvation = -44.118091 kcal Electronic energy + Delta-G solvation = -17665.418591 eV Core-core repulsion = 14920.106956 eV Total energy + Delta-G solvation = -2745.311635 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93294 -39.06572 -37.24425 -35.09400 -33.46976 -31.69907 -30.87049 -28.94264 -27.51415 -26.52964 -23.21820 -22.62355 -21.61924 -20.53174 -19.27693 -18.74641 -17.17330 -16.86912 -16.57320 -16.06297 -15.72923 -15.64764 -14.98721 -14.87982 -14.61316 -14.05681 -13.75425 -13.57656 -13.06255 -12.90968 -12.73353 -12.62731 -12.41652 -12.25550 -12.01752 -11.81428 -11.64818 -11.47548 -11.34525 -11.11008 -10.87028 -9.54457 -9.52279 -8.84333 -8.54735 -6.22966 0.97218 1.04635 1.39903 1.51262 1.54506 2.24013 2.58903 2.77366 3.55116 3.57235 3.71268 3.81260 4.11888 4.24544 4.32865 4.37530 4.45939 4.49325 4.64804 4.83409 4.88966 4.99437 5.04087 5.08440 5.14851 5.22517 5.26111 5.30857 5.43211 5.62121 5.68727 5.91290 6.07386 6.26311 6.30097 6.60346 6.67457 6.86021 6.97289 7.14504 8.41113 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.054167 B = 0.004734 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.797742 B = 5913.422194 C = 6277.903756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.031 3.969 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.261 1.261 7 C -0.501 4.501 8 H 0.074 0.926 9 C 0.052 3.948 10 C -0.148 4.148 11 C -0.136 4.136 12 C 0.010 3.990 13 O -0.314 6.314 14 C 0.078 3.922 15 H 0.065 0.935 16 C -0.141 4.141 17 C -0.114 4.114 18 C -0.111 4.111 19 C 0.094 3.906 20 H 0.046 0.954 21 N -0.840 5.840 22 C -0.169 4.169 23 C -0.206 4.206 24 H 0.286 0.714 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.348 0.652 34 H 0.345 0.655 35 H 0.124 0.876 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.400 -13.621 -0.003 13.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.531 4.531 8 H 0.092 0.908 9 C 0.050 3.950 10 C -0.168 4.168 11 C -0.155 4.155 12 C -0.034 4.034 13 O -0.229 6.229 14 C 0.021 3.979 15 H 0.083 0.917 16 C -0.179 4.179 17 C -0.151 4.151 18 C -0.148 4.148 19 C -0.018 4.018 20 H 0.064 0.936 21 N -0.373 5.373 22 C -0.187 4.187 23 C -0.225 4.225 24 H 0.096 0.904 25 H 0.130 0.870 26 H 0.127 0.873 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.142 0.858 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.144 -13.590 -0.584 13.651 hybrid contribution -0.301 1.131 0.946 1.505 sum -1.445 -12.460 0.362 12.549 Atomic orbital electron populations 1.69867 1.08825 1.30259 1.37625 1.26715 0.95581 1.04367 0.91475 0.85231 0.78644 0.75739 0.79920 1.18581 1.19315 1.18492 1.19686 0.96617 0.91883 1.44930 0.90776 1.17942 0.92986 0.93273 0.90824 1.20971 0.98656 0.96331 1.00812 1.20019 1.01056 0.90695 1.03722 1.18719 0.95278 0.85627 1.03800 1.85849 1.55541 1.13900 1.67643 1.23422 0.95311 0.83637 0.95547 0.91697 1.22945 0.97367 0.97238 1.00360 1.22220 0.96613 0.94096 1.02210 1.22218 0.94534 0.94866 1.03230 1.22047 0.92785 0.93946 0.93007 0.93595 1.58642 1.22701 1.08202 1.47736 1.20710 0.96912 0.98351 1.02744 1.20824 1.02917 0.93014 1.05763 0.90371 0.87007 0.87281 0.91885 0.92149 0.90037 0.90367 0.90186 0.89515 0.83800 0.84136 0.85797 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.02 10.81 21.82 0.24 -44.79 16 2 C 0.03 1.62 5.22 85.23 0.45 2.06 16 3 Si 0.98 39.15 29.58 68.60 2.03 41.18 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 5 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.50 -27.68 9.05 23.40 0.21 -27.47 16 8 H 0.07 3.93 7.88 -2.91 -0.02 3.90 16 9 C 0.05 2.88 5.57 -21.28 -0.12 2.76 16 10 C -0.15 -8.10 8.62 22.49 0.19 -7.91 16 11 C -0.14 -6.75 9.92 22.11 0.22 -6.54 16 12 C 0.01 0.45 6.64 22.79 0.15 0.61 16 13 O -0.31 -12.42 8.42 -90.01 -0.76 -13.18 16 14 C 0.08 2.43 2.63 31.67 0.08 2.51 16 15 H 0.07 2.06 6.56 -2.38 -0.02 2.04 16 16 C -0.14 -3.99 6.16 31.88 0.20 -3.80 16 17 C -0.11 -2.26 6.83 31.67 0.22 -2.05 16 18 C -0.11 -2.06 6.59 31.32 0.21 -1.85 16 19 C 0.09 2.27 4.01 45.64 0.18 2.46 16 20 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 21 N -0.84 -20.52 8.86 -165.66 -1.47 -21.99 16 22 C -0.17 -7.61 8.55 22.11 0.19 -7.42 16 23 C -0.21 -10.33 9.74 22.48 0.22 -10.11 16 24 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 25 H 0.11 6.35 6.13 -2.91 -0.02 6.34 16 26 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 27 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.06 1.78 7.10 -2.39 -0.02 1.76 16 29 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.08 1.46 7.92 -2.39 -0.02 1.44 16 32 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.35 6.40 9.07 -89.69 -0.81 5.59 16 34 H 0.35 9.46 7.98 -89.69 -0.72 8.74 16 35 H 0.12 4.78 5.19 -2.91 -0.02 4.77 16 36 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -61.23 291.47 2.01 -59.22 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: -0.43 Total: 36.29 kcal Atomic # 6 Polarization: -59.13 SS G_CDS: 2.40 Total: -56.74 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: -1.23 Total: -66.78 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.76 Total: -13.18 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -61.23 2.01 -59.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403363185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.103 kcal (2) G-P(sol) polarization free energy of solvation -61.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds