Wall clock time and date at job start Mon Mar 30 2020 06:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86797 * 119.99828 * 2 1 4 4 H 1.48502 * 109.47262 * 240.00125 * 3 2 1 5 5 H 1.48496 * 109.47145 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47297 * 120.00225 * 3 2 1 7 7 C 1.39890 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99584 * 190.33110 * 7 2 1 9 9 C 1.41215 * 120.00329 * 10.32194 * 7 2 1 10 10 C 1.40829 * 120.17986 * 213.51541 * 9 7 2 11 11 C 1.36432 * 119.81188 * 180.25424 * 10 9 7 12 12 C 1.39310 * 120.18594 * 0.02562 * 11 10 9 13 13 O 1.35678 * 119.82286 * 180.02562 * 12 11 10 14 14 C 1.42899 * 117.00140 * 174.84444 * 13 12 11 15 15 H 1.08997 * 110.43497 * 324.65324 * 14 13 12 16 16 C 1.54887 * 110.48562 * 87.33747 * 14 13 12 17 17 C 1.54889 * 102.74731 * 156.61711 * 16 14 13 18 18 C 1.54266 * 104.19668 * 322.05669 * 17 16 14 19 19 C 1.53875 * 106.59903 * 23.61308 * 18 17 16 20 20 H 1.09006 * 110.06818 * 240.69254 * 19 18 17 21 21 N 1.46897 * 110.03388 * 119.28169 * 19 18 17 22 22 C 1.39315 * 120.36570 * 359.97438 * 12 11 10 23 23 C 1.36442 * 120.18191 * 359.97438 * 22 12 11 24 24 H 0.96996 * 120.00302 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.09419 * 0.25360 * 10 9 7 26 26 H 1.08002 * 119.90587 * 180.02562 * 11 10 9 27 27 H 1.08996 * 110.75961 * 274.93533 * 16 14 13 28 28 H 1.08998 * 110.75374 * 38.30634 * 16 14 13 29 29 H 1.09005 * 110.48776 * 203.37886 * 17 16 14 30 30 H 1.09003 * 110.60080 * 80.79291 * 17 16 14 31 31 H 1.08999 * 110.03179 * 264.32328 * 18 17 16 32 32 H 1.09003 * 110.07058 * 142.91698 * 18 17 16 33 33 H 1.00899 * 111.00149 * 62.83500 * 21 19 18 34 34 H 1.00907 * 110.99909 * 186.78505 * 21 19 18 35 35 H 1.08002 * 119.91033 * 179.97438 * 22 12 11 36 36 H 1.07999 * 120.09165 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0751 -1.2191 0.1672 9 6 1.3194 -2.4245 -0.2202 10 6 1.7416 -3.6047 0.4217 11 6 1.0738 -4.7736 0.2000 12 6 -0.0227 -4.8018 -0.6589 13 8 -0.6818 -5.9681 -0.8736 14 6 -1.8637 -5.9075 -1.6745 15 1 -2.3993 -4.9758 -1.4925 16 6 -1.5091 -6.0479 -3.1757 17 6 -2.8327 -6.5643 -3.7926 18 6 -3.3902 -7.5366 -2.7326 19 6 -2.7742 -7.1189 -1.3858 20 1 -2.1856 -7.9385 -0.9735 21 7 -3.8350 -6.7380 -0.4438 22 6 -0.4469 -3.6387 -1.2978 23 6 0.2094 -2.4614 -1.0862 24 1 -0.4850 0.8400 0.0004 25 1 2.5917 -3.5846 1.0875 26 1 1.3960 -5.6795 0.6918 27 1 -1.2361 -5.0819 -3.6002 28 1 -0.7081 -6.7735 -3.3171 29 1 -2.6383 -7.0899 -4.7276 30 1 -3.5267 -5.7399 -3.9567 31 1 -3.1005 -8.5591 -2.9747 32 1 -4.4764 -7.4574 -2.6869 33 1 -4.4399 -7.5206 -0.2445 34 1 -3.4450 -6.3571 0.4054 35 1 -1.2976 -3.6691 -1.9626 36 1 -0.1205 -1.5607 -1.5825 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403363189.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:04 Heat of formation + Delta-G solvation = -31.458385 kcal Electronic energy + Delta-G solvation = -17657.123207 eV Core-core repulsion = 14912.360539 eV Total energy + Delta-G solvation = -2744.762669 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.45174 -37.52624 -35.73603 -33.19034 -32.60358 -29.70058 -29.22052 -27.70660 -26.24965 -24.61879 -21.51502 -21.02849 -20.36016 -19.31270 -17.46753 -17.16490 -15.75034 -15.50024 -15.16286 -14.81598 -14.11761 -13.99678 -13.74556 -13.35827 -13.00049 -12.46961 -12.10337 -11.86113 -11.78744 -11.53034 -11.28981 -11.09699 -11.02063 -10.91011 -10.66292 -10.49493 -10.39919 -9.78473 -9.70599 -9.29265 -9.03247 -8.67749 -7.64168 -6.88230 -6.62871 -4.24965 2.81234 2.96783 3.11427 3.14485 3.22627 3.99698 4.02420 4.55978 4.61405 4.71215 4.90838 5.07401 5.47560 5.53490 5.57935 5.63751 5.69595 5.88999 5.94151 6.02841 6.07030 6.15226 6.23758 6.33173 6.39275 6.74891 6.91115 7.11019 7.17245 7.31795 7.41892 7.45914 7.58853 7.90155 8.03758 8.17519 8.48439 8.68279 8.95470 9.01722 10.34834 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.038555 B = 0.004990 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.055630 B = 5609.694985 C = 5815.827120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.472 4.472 8 H 0.075 0.925 9 C 0.089 3.911 10 C -0.188 4.188 11 C -0.121 4.121 12 C 0.004 3.996 13 O -0.325 6.325 14 C 0.090 3.910 15 H 0.084 0.916 16 C -0.145 4.145 17 C -0.119 4.119 18 C -0.115 4.115 19 C 0.090 3.910 20 H 0.047 0.953 21 N -0.844 5.844 22 C -0.176 4.176 23 C -0.120 4.120 24 H 0.278 0.722 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.338 0.662 34 H 0.347 0.653 35 H 0.098 0.902 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.642 -9.457 -4.163 11.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.141 4.141 3 Si 0.734 3.266 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.503 4.503 8 H 0.093 0.907 9 C 0.087 3.913 10 C -0.207 4.207 11 C -0.140 4.140 12 C -0.039 4.039 13 O -0.241 6.241 14 C 0.032 3.968 15 H 0.102 0.898 16 C -0.183 4.183 17 C -0.157 4.157 18 C -0.153 4.153 19 C -0.022 4.022 20 H 0.065 0.935 21 N -0.375 5.375 22 C -0.195 4.195 23 C -0.140 4.140 24 H 0.089 0.911 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.160 0.840 35 H 0.116 0.884 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.015 -8.963 -4.644 11.751 hybrid contribution 0.615 0.303 0.632 0.933 sum -5.399 -8.660 -4.012 10.966 Atomic orbital electron populations 1.69787 1.07295 1.28926 1.38082 1.25804 0.94793 1.00895 0.92607 0.86367 0.79950 0.80550 0.79747 1.19054 1.20504 1.19192 1.19368 0.95624 0.90445 1.44833 0.90713 1.17582 0.92010 0.92256 0.89460 1.20699 1.03002 0.93114 1.03916 1.19638 0.96388 0.97689 1.00264 1.18587 0.97341 0.84252 1.03749 1.85826 1.38235 1.31201 1.68848 1.23035 0.85421 0.98594 0.89719 0.89808 1.22978 0.97644 1.02160 0.95528 1.22224 0.96877 0.98926 0.97674 1.22129 1.00850 0.98786 0.93544 1.21923 0.90961 0.95896 0.93404 0.93464 1.58874 1.22306 1.37607 1.18684 1.20669 1.01682 0.93609 1.03542 1.20890 0.98275 0.95683 0.99111 0.91113 0.88181 0.88633 0.90778 0.90698 0.91593 0.91305 0.91812 0.90743 0.84997 0.84005 0.88441 0.86631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.61 11.16 55.54 0.62 -20.99 16 2 C 0.07 1.90 5.23 -17.34 -0.09 1.81 16 3 Si 0.91 19.14 29.57 -169.99 -5.03 14.12 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.47 -12.69 9.02 -37.83 -0.34 -13.03 16 8 H 0.07 1.93 7.87 -52.49 -0.41 1.51 16 9 C 0.09 2.40 5.48 -106.81 -0.59 1.81 16 10 C -0.19 -4.66 9.74 -39.25 -0.38 -5.04 16 11 C -0.12 -2.83 9.92 -39.83 -0.40 -3.22 16 12 C 0.00 0.09 6.67 -38.78 -0.26 -0.17 16 13 O -0.33 -6.63 9.84 -18.74 -0.18 -6.81 16 14 C 0.09 1.51 2.34 -25.07 -0.06 1.45 16 15 H 0.08 1.55 6.26 -51.93 -0.33 1.22 16 16 C -0.14 -2.15 6.30 -24.74 -0.16 -2.31 16 17 C -0.12 -1.41 6.83 -25.07 -0.17 -1.58 16 18 C -0.11 -1.31 6.59 -25.61 -0.17 -1.47 16 19 C 0.09 1.23 3.79 -66.59 -0.25 0.97 16 20 H 0.05 0.67 8.07 -51.93 -0.42 0.25 16 21 N -0.84 -10.63 9.10 -3.72 -0.03 -10.66 16 22 C -0.18 -4.16 8.68 -39.83 -0.35 -4.51 16 23 C -0.12 -3.14 8.58 -39.25 -0.34 -3.48 16 24 H 0.28 6.79 8.30 -40.82 -0.34 6.46 16 25 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 26 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 27 H 0.07 1.15 7.42 -51.93 -0.39 0.77 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.80 7.92 -51.93 -0.41 0.38 16 33 H 0.34 3.35 9.07 -39.29 -0.36 2.99 16 34 H 0.35 4.58 9.01 -39.29 -0.35 4.23 16 35 H 0.10 2.09 5.36 -52.49 -0.28 1.81 16 36 H 0.12 3.12 6.59 -52.49 -0.35 2.77 16 LS Contribution 294.71 15.07 4.44 4.44 Total: -1.00 -28.21 294.71 -8.69 -36.90 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -4.96 Total: 11.78 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: -3.54 Total: -28.77 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.59 Total: -31.65 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.18 Total: -6.81 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.21 -8.69 -36.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403363189.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.444 kcal (2) G-P(sol) polarization free energy of solvation -28.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds