Wall clock time and date at job start Mon Mar 30 2020 06:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86797 * 119.99828 * 2 1 4 4 H 1.48502 * 109.47262 * 240.00125 * 3 2 1 5 5 H 1.48496 * 109.47145 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47297 * 120.00225 * 3 2 1 7 7 C 1.39890 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99584 * 190.33110 * 7 2 1 9 9 C 1.41215 * 120.00329 * 10.32194 * 7 2 1 10 10 C 1.40829 * 120.17986 * 213.51541 * 9 7 2 11 11 C 1.36432 * 119.81188 * 180.25424 * 10 9 7 12 12 C 1.39310 * 120.18594 * 0.02562 * 11 10 9 13 13 O 1.35678 * 119.82286 * 180.02562 * 12 11 10 14 14 C 1.42899 * 117.00140 * 174.84444 * 13 12 11 15 15 H 1.08997 * 110.43497 * 324.65324 * 14 13 12 16 16 C 1.54887 * 110.48562 * 87.33747 * 14 13 12 17 17 C 1.54889 * 102.74731 * 156.61711 * 16 14 13 18 18 C 1.54266 * 104.19668 * 322.05669 * 17 16 14 19 19 C 1.53875 * 106.59903 * 23.61308 * 18 17 16 20 20 H 1.09006 * 110.06818 * 240.69254 * 19 18 17 21 21 N 1.46897 * 110.03388 * 119.28169 * 19 18 17 22 22 C 1.39315 * 120.36570 * 359.97438 * 12 11 10 23 23 C 1.36442 * 120.18191 * 359.97438 * 22 12 11 24 24 H 0.96996 * 120.00302 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.09419 * 0.25360 * 10 9 7 26 26 H 1.08002 * 119.90587 * 180.02562 * 11 10 9 27 27 H 1.08996 * 110.75961 * 274.93533 * 16 14 13 28 28 H 1.08998 * 110.75374 * 38.30634 * 16 14 13 29 29 H 1.09005 * 110.48776 * 203.37886 * 17 16 14 30 30 H 1.09003 * 110.60080 * 80.79291 * 17 16 14 31 31 H 1.08999 * 110.03179 * 264.32328 * 18 17 16 32 32 H 1.09003 * 110.07058 * 142.91698 * 18 17 16 33 33 H 1.00899 * 111.00149 * 62.83500 * 21 19 18 34 34 H 1.00907 * 110.99909 * 186.78505 * 21 19 18 35 35 H 1.08002 * 119.91033 * 179.97438 * 22 12 11 36 36 H 1.07999 * 120.09165 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0751 -1.2191 0.1672 9 6 1.3194 -2.4245 -0.2202 10 6 1.7416 -3.6047 0.4217 11 6 1.0738 -4.7736 0.2000 12 6 -0.0227 -4.8018 -0.6589 13 8 -0.6818 -5.9681 -0.8736 14 6 -1.8637 -5.9075 -1.6745 15 1 -2.3993 -4.9758 -1.4925 16 6 -1.5091 -6.0479 -3.1757 17 6 -2.8327 -6.5643 -3.7926 18 6 -3.3902 -7.5366 -2.7326 19 6 -2.7742 -7.1189 -1.3858 20 1 -2.1856 -7.9385 -0.9735 21 7 -3.8350 -6.7380 -0.4438 22 6 -0.4469 -3.6387 -1.2978 23 6 0.2094 -2.4614 -1.0862 24 1 -0.4850 0.8400 0.0004 25 1 2.5917 -3.5846 1.0875 26 1 1.3960 -5.6795 0.6918 27 1 -1.2361 -5.0819 -3.6002 28 1 -0.7081 -6.7735 -3.3171 29 1 -2.6383 -7.0899 -4.7276 30 1 -3.5267 -5.7399 -3.9567 31 1 -3.1005 -8.5591 -2.9747 32 1 -4.4764 -7.4574 -2.6869 33 1 -4.4399 -7.5206 -0.2445 34 1 -3.4450 -6.3571 0.4054 35 1 -1.2976 -3.6691 -1.9626 36 1 -0.1205 -1.5607 -1.5825 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403363189.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:03 Heat of formation + Delta-G solvation = -48.466607 kcal Electronic energy + Delta-G solvation = -17657.860739 eV Core-core repulsion = 14912.360539 eV Total energy + Delta-G solvation = -2745.500200 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.97778 -39.09377 -37.32503 -35.09511 -33.64717 -31.59814 -31.09493 -28.95889 -27.47735 -26.42105 -23.27709 -22.74295 -21.64493 -20.60013 -19.28218 -18.91174 -17.25087 -16.78902 -16.44158 -16.29305 -15.81900 -15.52818 -15.05191 -14.87573 -14.65046 -14.16063 -13.66594 -13.56052 -13.39320 -13.05306 -12.78634 -12.66406 -12.45951 -12.21180 -12.05844 -11.80172 -11.63965 -11.56990 -11.36102 -11.13786 -10.87638 -9.70109 -9.57928 -8.80502 -8.54199 -6.26384 0.93316 1.02515 1.39836 1.51050 1.52341 2.24950 2.53162 2.77766 3.50892 3.51952 3.66528 3.79375 4.02544 4.23524 4.33639 4.37314 4.43933 4.46666 4.60518 4.79133 4.83228 4.95407 4.98833 5.08631 5.12587 5.16058 5.18618 5.35603 5.36792 5.51904 5.66770 5.94610 6.06916 6.13854 6.23521 6.53545 6.57287 6.80275 6.97640 7.08712 8.45021 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.038555 B = 0.004990 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.055630 B = 5609.694985 C = 5815.827120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.032 3.968 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.507 4.507 8 H 0.075 0.925 9 C 0.055 3.945 10 C -0.194 4.194 11 C -0.128 4.128 12 C 0.015 3.985 13 O -0.328 6.328 14 C 0.078 3.922 15 H 0.064 0.936 16 C -0.146 4.146 17 C -0.112 4.112 18 C -0.108 4.108 19 C 0.094 3.906 20 H 0.046 0.954 21 N -0.847 5.847 22 C -0.177 4.177 23 C -0.140 4.140 24 H 0.284 0.716 25 H 0.112 0.888 26 H 0.121 0.879 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.355 0.645 34 H 0.342 0.658 35 H 0.113 0.887 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.197 -10.547 -4.674 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.538 4.538 8 H 0.093 0.907 9 C 0.054 3.946 10 C -0.214 4.214 11 C -0.147 4.147 12 C -0.029 4.029 13 O -0.244 6.244 14 C 0.021 3.979 15 H 0.082 0.918 16 C -0.184 4.184 17 C -0.150 4.150 18 C -0.146 4.146 19 C -0.018 4.018 20 H 0.064 0.936 21 N -0.379 5.379 22 C -0.196 4.196 23 C -0.159 4.159 24 H 0.094 0.906 25 H 0.130 0.870 26 H 0.139 0.861 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.169 0.831 34 H 0.154 0.846 35 H 0.131 0.869 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.590 -10.090 -5.160 13.110 hybrid contribution 0.705 0.485 0.783 1.159 sum -5.886 -9.605 -4.377 12.085 Atomic orbital electron populations 1.69863 1.08806 1.30145 1.38755 1.26672 0.95574 1.04238 0.91545 0.85243 0.78590 0.75833 0.79934 1.18521 1.19531 1.18488 1.19638 0.95890 0.91541 1.46702 0.90659 1.17927 0.92921 0.93331 0.90462 1.20908 1.03465 0.93110 1.03888 1.19927 0.96249 0.98191 1.00287 1.18695 0.96961 0.84805 1.02433 1.85829 1.39382 1.29687 1.69511 1.23384 0.84439 0.99413 0.90659 0.91790 1.22965 0.99538 1.01690 0.94192 1.22221 0.94867 0.99242 0.98680 1.22137 1.01309 0.99620 0.91524 1.21927 0.90774 0.94008 0.95091 0.93636 1.58872 1.22140 1.38525 1.18387 1.20801 1.01871 0.93184 1.03726 1.20828 0.99184 0.95962 0.99954 0.90573 0.87021 0.86081 0.92194 0.90647 0.89224 0.91319 0.89719 0.89622 0.83089 0.84585 0.86881 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.16 11.16 21.82 0.24 -45.92 16 2 C 0.03 1.64 5.23 85.23 0.45 2.09 16 3 Si 0.98 39.52 29.57 68.60 2.03 41.55 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.51 -28.02 9.02 23.40 0.21 -27.81 16 8 H 0.08 3.98 7.87 -2.91 -0.02 3.96 16 9 C 0.06 3.08 5.48 -21.28 -0.12 2.96 16 10 C -0.19 -9.76 9.74 22.48 0.22 -9.54 16 11 C -0.13 -5.92 9.92 22.11 0.22 -5.70 16 12 C 0.01 0.69 6.67 22.79 0.15 0.84 16 13 O -0.33 -13.08 9.84 -89.96 -0.89 -13.96 16 14 C 0.08 2.54 2.34 31.67 0.07 2.62 16 15 H 0.06 2.35 6.26 -2.39 -0.01 2.34 16 16 C -0.15 -4.13 6.30 31.88 0.20 -3.93 16 17 C -0.11 -2.35 6.83 31.67 0.22 -2.14 16 18 C -0.11 -2.09 6.59 31.32 0.21 -1.88 16 19 C 0.09 2.36 3.79 45.64 0.17 2.53 16 20 H 0.05 1.18 8.07 -2.38 -0.02 1.16 16 21 N -0.85 -19.79 9.10 -165.67 -1.51 -21.30 16 22 C -0.18 -8.52 8.68 22.11 0.19 -8.33 16 23 C -0.14 -7.57 8.58 22.48 0.19 -7.37 16 24 H 0.28 14.13 8.30 -92.71 -0.77 13.36 16 25 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 26 H 0.12 4.91 8.06 -2.91 -0.02 4.88 16 27 H 0.06 1.84 7.42 -2.39 -0.02 1.83 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.51 7.92 -2.39 -0.02 1.49 16 33 H 0.35 6.18 9.07 -89.69 -0.81 5.37 16 34 H 0.34 8.65 9.01 -89.69 -0.81 7.85 16 35 H 0.11 4.95 5.36 -2.91 -0.02 4.94 16 36 H 0.10 5.56 6.59 -2.91 -0.02 5.54 16 Total: -1.00 -61.38 294.71 1.74 -59.63 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: -0.52 Total: 35.64 kcal Atomic # 6 Polarization: -58.04 SS G_CDS: 2.39 Total: -55.65 kcal Atomic # 7 Polarization: -65.95 SS G_CDS: -1.26 Total: -67.22 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.89 Total: -13.96 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -61.38 1.74 -59.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403363189.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.167 kcal (2) G-P(sol) polarization free energy of solvation -61.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds